Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p40060 Brassica napus HOM05D005727 ORTHO05D007324 1.5e-130 469.5 236 100.0
BcaC05g29610 Brassica carinata HOM05D005727 ORTHO05D007324 5.6e-130 467.6 236 99.2
C05p59120 Brassica napus HOM05D005727 ORTHO05D007324 5.6e-130 467.6 236 99.2
BolC5t34584H Brassica oleracea HOM05D005727 ORTHO05D007324 3.6e-129 464.9 236 98.7
Sp3g07170 Schrenkiella parvula HOM05D005727 ORTHO05D007324 3.6e-121 438.3 236 94.1
Thhalv10023841m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 7.8e-116 420.6 239 89.5
Thhalv10022392m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 4.3e-114 414.8 239 87.9
Carub.0003s0787 Capsella rubella HOM05D005727 ORTHO05D007324 9.6e-114 413.7 236 86.9
AL3G19740 Arabidopsis lyrata HOM05D005727 ORTHO05D007324 7.6e-111 404.1 238 86.6
AT3G08740 Arabidopsis thaliana HOM05D005727 ORTHO05D007324 8.4e-110 400.6 239 84.9
CARHR083040 Cardamine hirsuta HOM05D005727 ORTHO05D007324 1.1e-109 400.2 239 84.5
THA.LOC104823320 Tarenaya hassleriana HOM05D005727 ORTHO05D007324 1.0e-99 367.1 236 81.4
Aa31LG5G18760 Aethionema arabicum HOM05D005727 ORTHO05D007324 1.9e-98 362.8 236 81.4
Thhalv10014581m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 6.2e-97 357.8 232 78.4
Sp6g41120 Schrenkiella parvula HOM05D005727 ORTHO05D007324 7.6e-95 350.9 248 74.6
BcaNung03307 Brassica carinata HOM05D005727 ORTHO05D007324 1.9e-93 346.3 236 76.3
BolC3t14633H Brassica oleracea HOM05D005727 ORTHO05D007324 1.9e-93 346.3 186 88.2
C09p74740 Brassica napus HOM05D005727 ORTHO05D007324 3.2e-93 345.5 186 88.2
BcaNung03303 Brassica carinata HOM05D005727 ORTHO05D007324 5.5e-93 344.7 192 86.5
Cpa.g.sc86.59 Carica papaya HOM05D005727 ORTHO05D007324 9.3e-93 344.0 240 75.0
BcaC06g31951 Brassica carinata HOM05D005727 ORTHO05D007324 1.2e-92 343.6 186 87.6
A10p33800 Brassica napus HOM05D005727 ORTHO05D007324 6.0e-92 341.3 186 87.1
Atru.chr8.117 Acer truncatum HOM05D005727 ORTHO05D007324 1.3e-91 340.1 236 72.5
BraA10t45408Z Brassica rapa HOM05D005727 ORTHO05D007324 3.9e-91 338.6 186 86.0
Gohir.A09G213660 Gossypium hirsutum HOM05D005727 ORTHO05D007324 3.9e-91 338.6 239 71.1
Gohir.D09G215000 Gossypium hirsutum HOM05D005727 ORTHO05D007324 5.1e-91 338.2 239 71.1
Gorai.006G235400 Gossypium raimondii HOM05D005727 ORTHO05D007324 5.1e-91 338.2 239 71.1
Ciclev10012658m.g Citrus clementina HOM05D005727 ORTHO05D007324 5.3e-88 328.2 237 73.0
Nn2g10300 Nelumbo nucifera HOM05D005727 ORTHO05D007324 6.9e-88 327.8 239 69.9
Haze_21174 Corylus avellana HOM05D005727 ORTHO05D007324 1.5e-87 326.6 240 71.7
Thecc.04G151700 Theobroma cacao HOM05D005727 ORTHO05D007324 2.6e-87 325.9 239 69.9
QL07p032118 Quercus lobata HOM05D005727 ORTHO05D007324 4.5e-87 325.1 242 68.2
Cfa017035 Carpinus fangiana HOM05D005727 ORTHO05D007324 7.6e-87 324.3 240 71.2
Manes.08G171300 Manihot esculenta HOM05D005727 ORTHO05D007324 7.6e-87 324.3 242 68.6
Potri.016G136600 Populus trichocarpa HOM05D005727 ORTHO05D007324 2.2e-86 322.8 230 71.3
Sabra04G0153300 Salix brachista HOM05D005727 ORTHO05D007324 2.2e-86 322.8 233 71.7
TAR267G0001 Trochodendron aralioides HOM05D005727 ORTHO05D007324 2.9e-86 322.4 240 69.2
Aa31LG5G11490 Aethionema arabicum HOM05D005727 ORTHO05D007324 5.0e-86 321.6 202 80.7
Actinidia20792 Actinidia chinensis HOM05D005727 ORTHO05D007324 8.4e-86 320.9 243 65.8
Cc06_g00400 Coffea canephora HOM05D005727 ORTHO05D007324 8.4e-86 320.9 237 69.6
TAR636G3506 Trochodendron aralioides HOM05D005727 ORTHO05D007324 1.1e-85 320.5 240 68.8
arahy.Tifrunner.gnm1.ann1.FBM6UZ Arachis hypogaea HOM05D005727 ORTHO05D007324 1.4e-85 320.1 239 69.0
CiPaw.09G221300 Carya illinoinensis HOM05D005727 ORTHO05D007324 2.5e-85 319.3 244 68.0
PGR031G0696 Punica granatum HOM05D005727 ORTHO05D007324 2.5e-85 319.3 186 80.6
Psat3g118920 Pisum sativum HOM05D005727 ORTHO05D007324 5.5e-85 318.2 239 66.9
CsaV3_3G033100 Cucumis sativus L. HOM05D005727 ORTHO05D007324 2.7e-84 315.8 238 67.6
Dinv16978 Davidia involucrata HOM05D005727 ORTHO05D007324 2.7e-84 315.8 240 67.5
MD12G1188200 Malus domestica HOM05D005727 ORTHO05D007324 3.5e-84 315.5 241 69.3
CSS0016709 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 4.6e-84 315.1 243 67.1
MELO3C009104.2 Cucumis melo HOM05D005727 ORTHO05D007324 4.6e-84 315.1 220 70.9
PSO017G0584 Papaver somniferum HOM05D005727 ORTHO05D007324 7.9e-84 314.3 244 66.8
BcaC01g05776 Brassica carinata HOM05D005727 ORTHO05D007324 1.3e-83 313.5 186 83.9
DCAR_023975 Daucus carota HOM05D005727 ORTHO05D007324 3.0e-83 312.4 229 68.6
EL10Ac7g17100 Beta vulgaris HOM05D005727 ORTHO05D007324 6.7e-83 311.2 238 66.4
Migut.J00039 Erythranthe guttata HOM05D005727 ORTHO05D007324 6.7e-83 311.2 238 67.2
Lalb_Chr01g0023751 Lupinus albus HOM05D005727 ORTHO05D007324 8.7e-83 310.8 234 67.5
Glyma.18G213900 Glycine max HOM05D005727 ORTHO05D007324 1.5e-82 310.1 236 66.5
Lj1g0000237 Lotus japonicus HOM05D005727 ORTHO05D007324 1.5e-82 310.1 237 65.4
Sed0002775 Sechium edule HOM05D005727 ORTHO05D007324 1.5e-82 310.1 186 76.9
CANSAT35G1579 Cannabis sativa HOM05D005727 ORTHO05D007324 3.3e-82 308.9 242 66.9
RcHm_v2.0_Chr3g0460491 Rosa chinensis HOM05D005727 ORTHO05D007324 3.3e-82 308.9 248 66.5
GSVIVG01030181001 Vitis vinifera HOM05D005727 ORTHO05D007324 3.3e-82 308.9 242 65.7
PSO170G4055 Papaver somniferum HOM05D005727 ORTHO05D007324 5.7e-82 308.1 245 66.1
Aqoxy4G02424 Aquilegia oxysepala HOM05D005727 ORTHO05D007324 7.4e-82 307.8 243 65.8
arahy.Tifrunner.gnm1.ann1.CT9SCB Arachis hypogaea HOM05D005727 ORTHO05D007324 7.4e-82 307.8 247 66.0
ECA248G0208 Erigeron canadensis HOM05D005727 ORTHO05D007324 7.4e-82 307.8 213 69.0
FvH4_6g09890 Fragaria vesca HOM05D005727 ORTHO05D007324 7.4e-82 307.8 244 66.4
FAN05G4930 Fragaria x ananassa HOM05D005727 ORTHO05D007324 9.7e-82 307.4 244 66.4
TWI53G1599 Tripterygium wilfordii HOM05D005727 ORTHO05D007324 9.7e-82 307.4 239 65.7
Hund19761 Selenicereus undatus HOM05D005727 ORTHO05D007324 2.2e-81 306.2 236 65.3
Eucgr.A00739 Eucalyptus grandis HOM05D005727 ORTHO05D007324 2.8e-81 305.8 236 65.7
HanXRQChr11g0345321 Helianthus annuus HOM05D005727 ORTHO05D007324 2.8e-81 305.8 227 67.8
SalBow8G0913 Salvia bowleyana HOM05D005727 ORTHO05D007324 2.8e-81 305.8 236 65.3
FAN14G2915 Fragaria x ananassa HOM05D005727 ORTHO05D007324 3.7e-81 305.4 242 64.9
SGA_v2.0_scaffold85G26613 Striga asiatica HOM05D005727 ORTHO05D007324 3.7e-81 305.4 186 75.3
Phvul.008G082900 Phaseolus vulgaris HOM05D005727 ORTHO05D007324 4.8e-81 305.1 236 64.8
Glyma.09G275000 Glycine max HOM05D005727 ORTHO05D007324 6.3e-81 304.7 238 64.7
VMungo1383G0728 Vigna mungo HOM05D005727 ORTHO05D007324 1.1e-80 303.9 232 65.1
PGSC0003DMG400031234 Solanum tuberosum HOM05D005727 ORTHO05D007324 1.8e-80 303.1 237 65.0
ATR1127G235 Amborella trichopoda HOM05D005727 ORTHO05D007324 5.3e-80 301.6 186 76.3
FAN09G3145 Fragaria x ananassa HOM05D005727 ORTHO05D007324 5.3e-80 301.6 244 65.6
Sopen10g027500 Solanum pennellii HOM05D005727 ORTHO05D007324 5.3e-80 301.6 237 64.6
Ah.15g090030 Amaranthus hybridus HOM05D005727 ORTHO05D007324 1.5e-79 300.1 221 68.3
FAN05G2146 Fragaria x ananassa HOM05D005727 ORTHO05D007324 1.5e-79 300.1 264 61.7
Lsat_1_v5_gn_5_152381 Lactuca sativa HOM05D005727 ORTHO05D007324 2.0e-79 299.7 237 63.7
Solyc10g075020.3 Solanum lycopersicum HOM05D005727 ORTHO05D007324 2.0e-79 299.7 237 64.6
Sc02g0000150 Simmondsia chinensis HOM05D005727 ORTHO05D007324 2.6e-79 299.3 229 65.9
HanXRQChr01g0000121 Helianthus annuus HOM05D005727 ORTHO05D007324 4.5e-79 298.5 224 64.7
Oeu057982.1 Olea europaea HOM05D005727 ORTHO05D007324 4.5e-79 298.5 219 65.8
CSS0006704 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 7.7e-79 297.7 240 63.3
Os12g0115900 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 1.0e-78 297.4 186 72.6
Os11g0116400 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 1.7e-78 296.6 186 72.0
AUR62006416 Chenopodium quinoa HOM05D005727 ORTHO05D007324 2.2e-78 296.2 236 62.7
FAN05G2443 Fragaria x ananassa HOM05D005727 ORTHO05D007324 2.2e-78 296.2 262 61.8
HPP92_018087 Vanilla planifolia HOM05D005727 ORTHO05D007324 2.2e-78 296.2 236 63.6
CAN.G487.5 Capsicum annuum HOM05D005727 ORTHO05D007324 2.9e-78 295.8 229 65.9
Medtr7g073250 Medicago truncatula HOM05D005727 ORTHO05D007324 5.0e-78 295.0 228 67.1
Actinidia32567 Actinidia chinensis HOM05D005727 ORTHO05D007324 1.4e-77 293.5 223 67.3
AUR62029764 Chenopodium quinoa HOM05D005727 ORTHO05D007324 4.6e-76 288.5 248 60.1
SalBow1G5580 Salvia bowleyana HOM05D005727 ORTHO05D007324 4.6e-76 288.5 246 61.8
Nitab4.5_0010794g0010 Nicotiana tabacum HOM05D005727 ORTHO05D007324 6.1e-76 288.1 236 64.0
SalBow1G7101 Salvia bowleyana HOM05D005727 ORTHO05D007324 7.9e-76 287.7 256 59.0
AagrBONN_evm.TU.Sc2ySwM_228.1047 Anthoceros agrestis HOM05D005727 ORTHO05D007324 3.0e-75 285.8 206 66.5
Lj3A941T101 Lonicera japonica HOM05D005727 ORTHO05D007324 3.0e-75 285.8 235 62.6
TPR.G14131 Trifolium pratense HOM05D005727 ORTHO05D007324 5.1e-75 285.0 237 62.9
Peaxi162Scf01238g00221 Petunia axillaris HOM05D005727 ORTHO05D007324 8.8e-75 284.3 260 58.8
MSTRG.5500 Avicennia marina HOM05D005727 ORTHO05D007324 7.4e-74 281.2 238 60.1
COL.COLO4_06480 Corchorus olitorius HOM05D005727 ORTHO05D007324 2.2e-73 279.6 220 65.9
CBR_g46434 Chara braunii HOM05D005727 ORTHO05D007324 2.6e-71 272.7 226 58.8
SGA_v2.0_scaffold85G26621 Striga asiatica HOM05D005727 ORTHO05D007324 2.2e-70 269.6 160 77.5
Pp3c23_18430 Physcomitrium patens HOM05D005727 ORTHO05D007324 1.9e-69 266.5 240 57.5
SalBow5G2514 Salvia bowleyana HOM05D005727 ORTHO05D007324 1.2e-68 263.8 163 76.1
Prupe.6G293500 Prunus persica HOM05D005727 ORTHO05D007324 6.1e-68 261.5 241 60.2
Duzib268G0979 Durio zibethinus HOM05D005727 ORTHO05D007324 5.1e-67 258.5 199 67.3
SMO358G0605 Selaginella moellendorffii HOM05D005727 ORTHO05D007324 5.7e-66 255.0 184 60.9
vmacro08938 Vaccinium macrocarpon HOM05D005727 ORTHO05D007324 4.8e-65 251.9 298 50.7
unitig_578.g15912 Utricularia gibba HOM05D005727 ORTHO05D007324 1.5e-63 246.9 148 75.7
Mapoly0080s0087 Marchantia polymorpha HOM05D005727 ORTHO05D007324 1.3e-62 243.8 218 54.6
MCO07G614 Micromonas commoda HOM05D005727 ORTHO05D007324 1.5e-58 230.3 183 59.6
Rhsim04G0121700 Rhododendron simsii HOM05D005727 ORTHO05D007324 1.1e-56 224.2 332 41.9
Cre16.g691000 Chlamydomonas reinhardtii HOM05D005727 ORTHO05D007324 4.2e-53 212.2 184 54.9
MD04G1174600 Malus domestica HOM05D005727 ORTHO05D007324 8.0e-52 208.0 133 69.9
SEGI_30349 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 9.4e-45 184.5 129 63.6
ClCG10G022720 Citrullus lanatus HOM05D005727 ORTHO05D007324 5.9e-39 165.2 104 71.2
Sopen10g027490 Solanum pennellii HOM05D005727 ORTHO05D007324 2.3e-38 163.3 104 73.1
CDE04G3002 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 4.7e-36 155.6 139 63.3
PRCOL_00007056 Prasinoderma coloniale HOM05D005727 ORTHO05D007324 3.9e-22 109.4 166 38.6
Zm00001eb406060 Zea mays HOM05D005727 ORTHO05D007324 1.9e-21 107.1 57 80.7
Pp3c1_29390 Physcomitrium patens HOM05D007418 ORTHO05D009419 3.6e-20 102.8 183 26.8
Nn7g35872 Nelumbo nucifera HOM05D007418 ORTHO05D009419 8.1e-20 101.7 239 27.2
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 2.3e-19 100.1 184 30.4
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 8.9e-19 98.2 182 30.2
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 1.2e-18 97.8 182 30.2
THA.LOC104817736 Tarenaya hassleriana HOM05D007418 ORTHO05D009419 2.0e-18 97.1 185 29.7
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 2.6e-18 96.7 226 29.6
CBR_g28818 Chara braunii HOM05D007418 ORTHO05D009419 4.4e-18 95.9 188 28.7
AagrBONN_evm.TU.Sc2ySwM_344.2531 Anthoceros agrestis HOM05D007418 ORTHO05D009419 5.8e-18 95.5 164 29.9
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 5.8e-18 95.5 182 27.5
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 5.8e-18 95.5 184 25.0
Dinv13469 Davidia involucrata HOM05D007418 ORTHO05D009419 7.5e-18 95.1 245 27.3
Aa31LG11G8030 Aethionema arabicum HOM05D007418 ORTHO05D009419 1.7e-17 94.0 185 29.2
CDE04G0740 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 1.4e-16 90.9 63 68.3
Duzib160G0534 Durio zibethinus HOM05D007418 ORTHO05D009419 1.9e-16 90.5 217 28.1
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 4.1e-16 89.4 186 28.0
Gorai.009G114600 Gossypium raimondii HOM05D007418 ORTHO05D009419 2.1e-15 87.0 220 26.8
Gohir.A05G110100 Gossypium hirsutum HOM05D007418 ORTHO05D009419 2.7e-15 86.7 220 26.8
Actinidia16244 Actinidia chinensis HOM05D007418 ORTHO05D009419 3.5e-15 86.3 240 25.4
MCO01G577 Micromonas commoda HOM05D005727 ORTHO05D009419 4.6e-15 85.9 186 24.7
Manes.05G202800 Manihot esculenta HOM05D007418 ORTHO05D009419 7.8e-15 85.1 185 28.6
BolC5t33821H Brassica oleracea HOM05D007418 ORTHO05D009419 1.0e-14 84.7 185 27.0
BraA05t22194Z Brassica rapa HOM05D007418 ORTHO05D009419 1.0e-14 84.7 185 27.0
Cre06.g263050 Chlamydomonas reinhardtii HOM05D007418 ORTHO05D009419 1.3e-14 84.3 205 30.2
TWI60G0114 Tripterygium wilfordii HOM05D007418 ORTHO05D009419 1.7e-14 84.0 187 27.3
Ciclev10016443m.g Citrus clementina HOM05D007418 ORTHO05D009419 3.0e-14 83.2 186 25.8
COL.COLO4_22858 Corchorus olitorius HOM05D007418 ORTHO05D009419 3.0e-14 83.2 183 25.1
Thecc.06G017000 Theobroma cacao HOM05D007418 ORTHO05D009419 1.1e-13 81.3 186 26.3
HPP92_000821 Vanilla planifolia HOM05D007418 ORTHO05D009419 1.2e-12 77.8 165 26.7
Potri.001G004300 Populus trichocarpa HOM05D007418 ORTHO05D009419 2.1e-12 77.0 186 25.3
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 2.1e-12 77.0 185 25.4
SEGI_29867 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 1.5e-10 70.9 41 78.0
Hma1.2p1_0062F.1_g034220 Hydrangea macrophylla HOM05D007418 ORTHO05D009419 2.2e-09 67.0 131 27.5
Ciclev10010465m.g Citrus clementina HOM05D005727 ORTHO05D007324 3.7e-09 66.2 40 80.0
Sabra01G0003000 Salix brachista HOM05D007418 ORTHO05D009419 7.1e-08 62.0 233 22.7


User provided reference genes

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