Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 2001.1 1018 100.0
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1973.4 1018 98.2
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1943.7 1019 97.4
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1872.8 1018 94.0
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1808.9 1025 90.4
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1805.4 1027 90.7
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1801.6 1027 90.7
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1793.9 1016 90.5
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1788.1 1028 90.4
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1775.4 1022 89.2
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1773.1 1018 89.4
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1772.3 1019 89.5
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1738.8 1023 87.8
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1736.5 1019 87.4
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1726.8 1021 87.1
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 0.0e+00 1702.2 1035 84.8
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1697.2 1018 86.0
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1672.9 1023 84.6
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1557.7 1026 79.4
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1532.3 1031 78.5
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1500.0 908 84.4
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1414.4 1028 71.9
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1411.7 1010 73.5
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1411.4 1032 72.6
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1404.8 1007 73.4
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1399.8 1028 71.7
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1398.3 1028 71.7
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1392.9 1032 71.4
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1387.1 1027 71.5
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1383.2 1007 72.3
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1378.2 1029 71.3
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1377.1 1002 71.8
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1374.4 1007 72.1
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1373.6 1030 69.7
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1370.9 1001 71.5
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1370.1 1016 71.7
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1370.1 1032 70.6
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1368.6 1006 71.6
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1366.3 1029 69.5
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1365.5 1019 71.0
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1360.5 1006 71.5
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1358.6 1019 70.7
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1356.3 1007 71.2
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1355.9 1032 70.3
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1352.8 1010 71.7
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1351.7 1013 70.8
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1347.4 1006 70.8
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1347.0 974 72.1
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1346.6 1031 68.6
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1346.3 1010 71.0
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1345.1 1013 70.4
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1343.2 1024 70.5
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1342.4 1007 70.7
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1341.3 1030 69.0
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1339.3 1029 71.0
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1338.6 1017 69.4
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1338.2 1025 70.2
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1333.9 1048 67.3
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1333.5 1033 68.9
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1332.0 1013 70.2
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1332.0 1048 67.9
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1330.9 1033 68.8
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1330.5 1012 70.3
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1327.0 1030 68.3
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1325.8 1015 69.0
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1325.8 1015 69.0
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1325.8 1029 68.2
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1323.9 1046 68.4
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1323.5 1007 70.1
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1323.1 1032 68.1
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1322.4 1029 68.1
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1322.0 1027 67.9
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1320.1 1039 67.9
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1319.7 1063 67.1
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1318.5 1033 68.2
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1312.0 1006 69.4
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1310.8 1013 68.8
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1309.7 1009 68.7
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1307.4 1004 69.2
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1307.4 1013 68.2
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1306.2 1051 66.8
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1306.2 1013 69.3
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1303.5 1011 67.8
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1298.9 999 69.2
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1295.8 1019 67.9
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1295.8 1030 67.3
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1294.6 1005 68.7
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1294.3 999 66.9
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1292.7 1021 67.9
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1291.2 1000 68.7
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1289.6 1028 68.2
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1288.5 1036 67.4
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1286.9 1053 66.6
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1284.6 1007 68.1
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1277.3 1053 66.4
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1276.9 1017 66.4
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1275.0 1009 66.7
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1265.8 1005 66.5
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1265.0 1033 65.4
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1261.9 936 70.5
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1261.1 1018 66.8
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 0.0e+00 1258.0 1011 65.7
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1255.7 1024 65.0
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 0.0e+00 1250.0 1018 64.9
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1246.1 1021 66.2
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1240.7 1038 64.7
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1238.8 1038 64.6
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1237.6 1033 64.6
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1237.2 894 74.0
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1228.4 897 73.1
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1228.0 929 70.6
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1220.7 1032 62.8
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1217.6 992 65.8
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 0.0e+00 1207.6 1022 64.5
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1200.7 1011 64.8
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 0.0e+00 1191.0 1040 62.3
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1190.3 1027 63.1
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 0.0e+00 1174.8 1043 62.9
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 0.0e+00 1151.3 1026 61.4
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 0.0e+00 1135.9 935 65.5
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1122.1 1012 61.2
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1110.1 1019 61.5
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1107.8 1024 60.4
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 0.0e+00 1101.3 1023 58.4
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1087.8 1003 59.4
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 6.3e-311 1070.8 1009 58.8
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 6.3e-311 1070.8 1071 56.8
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 8.4e-311 1070.5 1053 57.4
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 2.5e-288 995.7 1003 57.6
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 4.8e-279 964.9 896 58.4
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 7.7e-277 957.6 1044 55.6
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 1.2e-269 933.7 802 64.5
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 8.0e-266 921.0 822 60.1
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.4e-249 867.1 968 50.4
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 1.2e-248 864.0 999 49.5
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 5.9e-245 851.7 968 50.5
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 5.6e-243 845.1 735 64.6
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 1.6e-242 843.6 1030 48.4
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 5.7e-240 835.1 740 63.8
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 5.8e-224 781.9 968 47.0
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 2.7e-221 773.1 405 96.8
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 4.6e-221 772.3 823 51.3
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 2.5e-211 740.0 822 50.9
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 1.1e-203 714.5 908 46.9
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 3.6e-194 682.9 664 58.0
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 4.6e-189 666.0 721 58.4
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 1.3e-178 631.3 838 48.1
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 2.6e-168 597.0 978 40.3
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 1.0e-164 585.1 630 53.7
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 4.8e-146 523.1 676 49.1
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 1.6e-144 518.1 616 49.8
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.7e-144 517.3 597 50.9
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 2.5e-134 484.2 1153 32.8
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 2.9e-114 417.5 645 43.3
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 5.2e-100 370.2 537 43.4
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 7.8e-96 356.3 284 69.0
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 3.5e-80 304.3 244 68.9
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 6.7e-79 300.1 274 62.0
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 7.4e-78 296.6 317 55.8
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 9.0e-68 263.1 168 82.7
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 1.2e-67 262.7 256 58.2
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 4.9e-66 257.3 163 84.0
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 4.9e-66 257.3 975 28.4
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 8.2e-53 213.4 1081 24.2
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 3.1e-52 211.5 215 51.2
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 1.4e-49 202.6 931 24.6
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 4.1e-44 184.5 153 58.2
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 5.3e-44 184.1 212 45.8
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 8.8e-31 140.2 172 48.8
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 2.9e-26 125.2 130 50.0
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.9e-25 122.5 150 46.7
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 2.0e-19 102.4 114 46.5
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 7.7e-19 100.5 98 53.1
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 7.7e-19 100.5 98 53.1
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 5.7e-14 84.3 63 69.8
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 1.4e-12 79.7 60 66.7
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 2.7e-11 75.5 64 57.8


User provided reference genes

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