Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p29570 Brassica napus HOM05D003926 ORTHO05D010327 0.0e+00 1174.8 587 100.0
A05p29520 Brassica napus HOM05D003926 ORTHO05D005273 1.1e-254 883.2 1030 52.7
BolC5t35094H Brassica oleracea HOM05D003926 ORTHO05D005273 2.9e-98 363.6 322 68.6
C09p75640 Brassica napus HOM05D003926 ORTHO05D005273 5.5e-97 359.4 319 68.3
A05p45150 Brassica napus HOM05D003926 ORTHO05D005273 3.6e-96 356.7 319 68.0
BcaC05g30341 Brassica carinata HOM05D003926 ORTHO05D005273 4.7e-96 356.3 322 67.4
BraA05t23147Z Brassica rapa HOM05D003926 ORTHO05D005273 1.7e-93 347.8 331 64.4
Sp3g01330 Schrenkiella parvula HOM05D003926 ORTHO05D005273 1.6e-91 341.3 324 63.9
Thhalv10019869m.g Eutrema salsugineum HOM05D003926 ORTHO05D005273 9.5e-89 332.0 324 62.7
CARHR076230 Cardamine hirsuta HOM05D003926 ORTHO05D005273 1.4e-87 328.2 320 62.2
AL3G11530 Arabidopsis lyrata HOM05D003926 ORTHO05D005273 1.7e-85 321.2 347 59.4
AT3G02260 Arabidopsis thaliana HOM05D003926 ORTHO05D005273 2.9e-82 310.5 321 60.4
Aa31LG5G12790 Aethionema arabicum HOM05D003926 ORTHO05D005273 1.2e-78 298.5 321 57.3
THA.LOC104802985 Tarenaya hassleriana HOM05D003926 ORTHO05D005273 5.0e-66 256.5 319 51.4
AT5G41690 Arabidopsis thaliana HOM05D007723 ORTHO05D010327 1.1e-41 175.6 322 39.4
AL7G47660 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 2.1e-40 171.4 322 38.5
Prupe.3G248400 Prunus persica HOM05D003926 ORTHO05D005273 1.4e-39 168.7 294 38.4
AL7G46090 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 5.3e-39 166.8 330 38.2
Carub.0003s0138 Capsella rubella HOM05D003926 ORTHO05D005273 9.0e-39 166.0 113 76.1
C06p07840 Brassica napus HOM05D007723 ORTHO05D017516 4.5e-38 163.7 309 37.9
AT3G48835 Arabidopsis thaliana HOM05D007723 ORTHO05D010327 7.6e-38 162.9 296 37.2
BraA06t23401Z Brassica rapa HOM05D007723 ORTHO05D017516 7.6e-38 162.9 309 38.5
Carub.0007s3379 Capsella rubella HOM05D007723 ORTHO05D010327 2.2e-37 161.4 327 37.3
AL7G48270 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 4.9e-37 160.2 301 39.5
Dinv33869 Davidia involucrata HOM05D003926 ORTHO05D005273 4.9e-37 160.2 299 37.5
Thhalv10018407m.g Eutrema salsugineum HOM05D007723 ORTHO05D010327 4.9e-37 160.2 306 38.9
Thecc.04G107500 Theobroma cacao HOM05D003926 ORTHO05D005273 6.4e-37 159.8 315 36.8
AL5G28350 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 8.4e-37 159.5 336 36.9
A06p01840 Brassica napus HOM05D007723 ORTHO05D017516 7.1e-36 156.4 305 38.4
AL7G49700 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 1.2e-35 155.6 330 37.9
Carub.0005s1501 Capsella rubella HOM05D007723 ORTHO05D010327 1.2e-35 155.6 342 36.3
AL7G49680 Arabidopsis lyrata HOM05D003182 ORTHO05D003829 1.6e-35 155.2 329 35.9
Thhalv10019472m.g Eutrema salsugineum HOM05D007723 ORTHO05D010327 1.6e-35 155.2 306 37.3
AL7G49110 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 2.7e-35 154.5 321 36.1
Atru.chr8.620 Acer truncatum HOM05D003926 ORTHO05D005273 4.6e-35 153.7 279 38.0
C05p48260 Brassica napus HOM05D007723 ORTHO05D010327 4.6e-35 153.7 328 36.3
Rhsim10G0059600 Rhododendron simsii HOM05D003926 ORTHO05D005273 7.9e-35 152.9 290 36.9
RcHm_v2.0_Chr2g0164791 Rosa chinensis HOM05D003926 ORTHO05D005273 1.8e-34 151.8 276 37.3
BcaC05g29897 Brassica carinata HOM05D007723 ORTHO05D010327 3.9e-34 150.6 321 36.4
Dinv34905 Davidia involucrata HOM05D003926 ORTHO05D005273 3.9e-34 150.6 295 37.3
TAR374G0863 Trochodendron aralioides HOM05D003926 ORTHO05D005273 3.9e-34 150.6 287 35.2
A05p31800 Brassica napus HOM05D007723 ORTHO05D010327 5.1e-34 150.2 330 35.8
BcaB07g29891 Brassica carinata HOM05D007723 ORTHO05D021795 6.7e-34 149.8 339 34.5
FvH4_6g46320 Fragaria vesca HOM05D003926 ORTHO05D005273 8.7e-34 149.4 276 36.6
BraA05t22011Z Brassica rapa HOM05D007723 ORTHO05D010327 1.9e-33 148.3 328 35.7
BolC5t34971H Brassica oleracea HOM05D007723 ORTHO05D010327 3.3e-33 147.5 330 34.8
Duzib133G0169 Durio zibethinus HOM05D003926 ORTHO05D005273 3.3e-33 147.5 316 35.1
TWI32G0285 Tripterygium wilfordii HOM05D003926 ORTHO05D005273 3.3e-33 147.5 314 34.7
A05p29350 Brassica napus HOM05D007723 ORTHO05D010327 4.3e-33 147.1 328 35.4
A05p29590 Brassica napus HOM05D007723 ORTHO05D010327 4.3e-33 147.1 328 35.4
A05p29750 Brassica napus HOM05D007723 ORTHO05D010327 4.3e-33 147.1 328 35.4
Gohir.A07G179100 Gossypium hirsutum HOM05D003926 ORTHO05D005273 5.6e-33 146.7 349 34.7
MD09G1075600 Malus domestica HOM05D003926 ORTHO05D005273 9.6e-33 146.0 294 34.7
QL02p065183 Quercus lobata HOM05D003926 ORTHO05D005273 9.6e-33 146.0 331 34.1
FAN09G1503 Fragaria x ananassa HOM05D003926 ORTHO05D005273 1.3e-32 145.6 276 35.5
AL3G52780 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 2.1e-32 144.8 287 40.4
MD17G1066300 Malus domestica HOM05D003926 ORTHO05D005273 2.1e-32 144.8 294 35.0
Actinidia18083 Actinidia chinensis HOM05D003926 ORTHO05D005273 2.8e-32 144.4 295 35.9
Gorai.001G206500 Gossypium raimondii HOM05D003926 ORTHO05D005273 2.8e-32 144.4 315 35.2
CANSAT64G0948 Cannabis sativa HOM05D003926 ORTHO05D005273 4.8e-32 143.7 296 34.8
AL7G49150 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 1.4e-31 142.1 316 35.1
Potri.017G101100 Populus trichocarpa HOM05D003926 ORTHO05D005273 1.8e-31 141.7 293 35.2
CARHR065380 Cardamine hirsuta HOM05D007723 ORTHO05D010327 3.1e-31 141.0 326 34.7
AL7G48800 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 4.0e-31 140.6 316 34.8
A02p17480 Brassica napus HOM05D007723 ORTHO05D010327 5.3e-31 140.2 302 35.4
BolC6t35717H Brassica oleracea HOM05D007723 ORTHO05D017516 5.3e-31 140.2 304 36.5
Haze_14378 Corylus avellana HOM05D003926 ORTHO05D005273 9.0e-31 139.4 275 34.5
Cfa007698 Carpinus fangiana HOM05D003926 ORTHO05D005273 2.0e-30 138.3 275 34.2
BcaC05g30204 Brassica carinata HOM05D007723 ORTHO05D010327 3.4e-30 137.5 327 34.3
BraA02t06793Z Brassica rapa HOM05D007723 ORTHO05D010327 4.5e-30 137.1 313 34.8
BcaB05g22365 Brassica carinata HOM05D007723 ORTHO05D017516 7.6e-30 136.3 300 36.7
AT1G45100 Arabidopsis thaliana HOM05D007723 ORTHO05D010327 9.9e-30 136.0 289 34.6
C01p12020 Brassica napus HOM05D007723 ORTHO05D019955 9.9e-30 136.0 319 34.5
Sabra17G0086900 Salix brachista HOM05D003926 ORTHO05D005273 9.9e-30 136.0 296 33.8
BolC6t35870H Brassica oleracea HOM05D007723 ORTHO05D017516 1.3e-29 135.6 199 43.2
CSS0002647 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 2.9e-29 134.4 295 34.6
BraA01t00966Z Brassica rapa HOM05D007723 ORTHO05D019955 3.8e-29 134.0 315 34.3
CSS0025257 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 3.8e-29 134.0 295 34.6
Sp5g24210 Schrenkiella parvula HOM05D007723 ORTHO05D010327 4.9e-29 133.7 256 39.1
Sc14g0004890 Simmondsia chinensis HOM05D003926 ORTHO05D005273 4.9e-29 133.7 304 33.2
BcaC08g43259 Brassica carinata HOM05D007723 ORTHO05D017516 6.4e-29 133.3 251 38.2
C06p06040 Brassica napus HOM05D007723 ORTHO05D017516 6.4e-29 133.3 251 38.2
PGR004G0818 Punica granatum HOM05D003926 ORTHO05D005273 6.4e-29 133.3 276 33.7
Carub.0007s3512 Capsella rubella HOM05D007723 ORTHO05D010327 1.1e-28 132.5 289 33.9
BcaC03g15302 Brassica carinata HOM05D007723 ORTHO05D010327 1.9e-28 131.7 263 36.9
BolC1t01176H Brassica oleracea HOM05D007723 ORTHO05D019955 5.5e-28 130.2 315 34.3
BcaC09g51543 Brassica carinata HOM05D007723 ORTHO05D019955 9.3e-28 129.4 292 35.3
BraA02t09028Z Brassica rapa HOM05D007723 ORTHO05D021795 1.6e-27 128.6 353 31.7
Carub.0007s3490 Capsella rubella HOM05D007723 ORTHO05D010327 2.1e-27 128.3 294 36.4
A01p10210 Brassica napus HOM05D007723 ORTHO05D019955 2.7e-27 127.9 318 33.0
AL7G49950 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 3.5e-27 127.5 410 30.0
Ciclev10010885m.g Citrus clementina HOM05D003926 ORTHO05D005273 3.5e-27 127.5 288 31.9
SGA_v2.0_scaffold52G19072 Striga asiatica HOM05D003926 ORTHO05D005273 3.5e-27 127.5 306 30.4
A02p40830 Brassica napus HOM05D007723 ORTHO05D021795 4.6e-27 127.1 353 31.2
Carub.0007s2554 Capsella rubella HOM05D007723 ORTHO05D010327 7.9e-27 126.3 201 40.3
C02p29140 Brassica napus HOM05D007723 ORTHO05D010327 1.0e-26 125.9 280 35.4
MELO3C022053.2 Cucumis melo HOM05D003926 ORTHO05D005273 1.8e-26 125.2 299 34.4
Migut.H00584 Erythranthe guttata HOM05D003926 ORTHO05D005273 1.8e-26 125.2 319 30.1
Lj4C124T8 Lonicera japonica HOM05D003926 ORTHO05D005273 5.1e-26 123.6 335 29.9
ClCG11G004990 Citrullus lanatus HOM05D003926 ORTHO05D005273 6.7e-26 123.2 299 34.4
BolC2t08963H Brassica oleracea HOM05D007723 ORTHO05D010327 4.3e-25 120.6 291 34.0
CARHR037380 Cardamine hirsuta HOM05D007723 ORTHO05D010327 4.3e-25 120.6 293 35.2
DCAR_011007 Daucus carota HOM05D003926 ORTHO05D005273 4.3e-25 120.6 328 32.0
CsaV3_5G038720 Cucumis sativus L. HOM05D003926 ORTHO05D005273 9.6e-25 119.4 299 33.4
EL10Ac2g04434 Beta vulgaris HOM05D003926 ORTHO05D005273 2.8e-24 117.9 307 30.9
BolC2t07291H Brassica oleracea HOM05D007723 ORTHO05D019955 2.8e-24 117.9 197 41.1
vmacro05611 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 4.8e-24 117.1 223 38.1
BcaB05g22608 Brassica carinata HOM05D007723 ORTHO05D019955 8.2e-24 116.3 258 36.0
HanXRQChr15g0464821 Helianthus annuus HOM05D003926 ORTHO05D005273 1.4e-23 115.5 277 31.0
AUR62023153 Chenopodium quinoa HOM05D003926 ORTHO05D005273 1.8e-23 115.2 290 32.4
Manes.02G059900 Manihot esculenta HOM05D003926 ORTHO05D005273 1.8e-23 115.2 302 28.8
TAR622G1093 Trochodendron aralioides HOM05D003926 ORTHO05D005273 1.8e-23 115.2 127 48.8
Sed0020046 Sechium edule HOM05D003926 ORTHO05D005273 2.4e-23 114.8 299 32.4
Nitab4.5_0001339g0050 Nicotiana tabacum HOM05D003926 ORTHO05D005273 3.1e-23 114.4 322 29.5
Aqoxy3G03752 Aquilegia oxysepala HOM05D003926 ORTHO05D005273 4.0e-23 114.0 277 31.4
Nitab4.5_0009887g0010 Nicotiana tabacum HOM05D003926 ORTHO05D005273 4.0e-23 114.0 323 29.1
Cc07_g04520 Coffea canephora HOM05D003926 ORTHO05D005273 5.3e-23 113.6 308 31.8
CARHR123890 Cardamine hirsuta HOM05D007723 ORTHO05D010327 1.2e-22 112.5 228 37.7
PSO782G5674 Papaver somniferum HOM05D003926 ORTHO05D005273 1.2e-22 112.5 275 31.6
SpUn0020_0070 Schrenkiella parvula HOM05D007723 ORTHO05D010327 1.5e-22 112.1 333 32.1
Nn3g17538 Nelumbo nucifera HOM05D003926 ORTHO05D005273 2.0e-22 111.7 276 30.4
BolC3t16447H Brassica oleracea HOM05D007723 ORTHO05D010327 3.4e-22 110.9 335 30.7
AUR62009475 Chenopodium quinoa HOM05D003926 ORTHO05D005273 3.4e-22 110.9 269 32.3
PSO063G5950 Papaver somniferum HOM05D003926 ORTHO05D005273 4.5e-22 110.5 275 32.0
Medtr7g017100 Medicago truncatula HOM05D003926 ORTHO05D005273 7.6e-22 109.8 314 31.2
MSTRG.23855 Avicennia marina HOM05D003926 ORTHO05D005273 1.3e-21 109.0 309 29.8
ECA232G4780 Erigeron canadensis HOM05D003926 ORTHO05D005273 1.3e-21 109.0 291 28.9
Ah.16g101010 Amaranthus hybridus HOM05D003926 ORTHO05D005273 1.7e-21 108.6 271 30.6
arahy.Tifrunner.gnm1.ann1.DT5ZWB Arachis hypogaea HOM05D003926 ORTHO05D005273 2.2e-21 108.2 336 28.9
Ca_06914_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 2.9e-21 107.8 304 30.6
Ca_06916_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 2.9e-21 107.8 304 30.6
CARHR253110 Cardamine hirsuta HOM05D007723 ORTHO05D010327 3.8e-21 107.5 198 38.4
GSVIVG01036538001 Vitis vinifera HOM05D003926 ORTHO05D005273 3.8e-21 107.5 128 48.4
arahy.Tifrunner.gnm1.ann1.IQIT5J Arachis hypogaea HOM05D003926 ORTHO05D005273 6.5e-21 106.7 295 29.8
Psat3g203080 Pisum sativum HOM05D003926 ORTHO05D005273 6.5e-21 106.7 303 30.0
arahy.Tifrunner.gnm1.ann1.FDTJ9Q Arachis hypogaea HOM05D003926 ORTHO05D005273 8.4e-21 106.3 336 28.6
C03p41670 Brassica napus HOM05D007723 ORTHO05D010327 8.4e-21 106.3 322 31.4
MBI15_g05000_MAGBIO Magnolia biondii HOM05D003926 ORTHO05D005273 8.4e-21 106.3 331 28.4
Lj1g0024205 Lotus japonicus HOM05D003926 ORTHO05D005273 1.1e-20 105.9 306 30.4
Gohir.A07G178901 Gossypium hirsutum HOM05D003926 ORTHO05D005273 1.9e-20 105.1 127 46.5
Solyc02g089260.4 Solanum lycopersicum HOM05D003926 ORTHO05D005273 1.9e-20 105.1 295 30.8
Lsat_1_v5_gn_4_173381 Lactuca sativa HOM05D003926 ORTHO05D005273 2.5e-20 104.8 312 29.5
Sopen02g034050 Solanum pennellii HOM05D003926 ORTHO05D005273 2.5e-20 104.8 295 30.8
Lalb_Chr21g0318281 Lupinus albus HOM05D003926 ORTHO05D005273 3.2e-20 104.4 304 32.2
CiPaw.03G082600 Carya illinoinensis HOM05D003926 ORTHO05D005273 7.1e-20 103.2 127 45.7
CARHR219370 Cardamine hirsuta HOM05D007723 ORTHO05D010327 9.3e-20 102.8 180 37.8
Lalb_Chr06g0174881 Lupinus albus HOM05D003926 ORTHO05D005273 1.2e-19 102.4 292 32.9
Thhalv10018369m.g Eutrema salsugineum HOM05D007723 ORTHO05D010327 1.6e-19 102.1 321 31.5
TPR.G23405 Trifolium pratense HOM05D003926 ORTHO05D005273 1.6e-19 102.1 297 30.6
Hund16238 Selenicereus undatus HOM05D003926 ORTHO05D005273 1.0e-18 99.4 297 30.6
CAN.G497.55 Capsicum annuum HOM05D003926 ORTHO05D005273 1.3e-18 99.0 294 29.9
AT3G10845 Arabidopsis thaliana HOM05D007723 ORTHO05D010327 2.3e-18 98.2 303 32.0
Glyma.18G275200 Glycine max HOM05D003926 ORTHO05D005273 3.3e-17 94.4 259 29.3
Phvul.008G025700 Phaseolus vulgaris HOM05D003926 ORTHO05D005273 5.7e-17 93.6 298 28.5
Glyma.08G252600 Glycine max HOM05D003926 ORTHO05D005273 9.7e-17 92.8 259 29.0
Sp5g26910 Schrenkiella parvula HOM05D007723 ORTHO05D010327 8.2e-16 89.7 151 40.4
BcaC03g18014 Brassica carinata HOM05D007723 ORTHO05D021795 3.1e-15 87.8 275 29.1
Peaxi162Scf00020g02344 Petunia axillaris HOM05D003926 ORTHO05D005273 3.1e-15 87.8 288 27.1
C02p60730 Brassica napus HOM05D007723 ORTHO05D021795 4.1e-15 87.4 294 27.6
BolC2t12124H Brassica oleracea HOM05D007723 ORTHO05D021795 9.0e-15 86.3 267 29.6
Carub.0007s3494 Capsella rubella HOM05D007723 ORTHO05D010327 2.2e-13 81.6 239 32.2
AL7G46120 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 6.5e-13 80.1 238 31.9
BcaC08g43419 Brassica carinata HOM05D007723 ORTHO05D010327 8.5e-13 79.7 303 29.4
Cpa.g.sc3603.1 Carica papaya HOM05D003926 ORTHO05D018213 1.9e-12 78.6 109 44.0
BcaC03g18012 Brassica carinata HOM05D007723 ORTHO05D010327 1.2e-11 75.9 155 33.5
Duzib211G0130 Durio zibethinus HOM05D003926 ORTHO05D005273 7.9e-11 73.2 290 27.2
AL7G49130 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 1.0e-10 72.8 155 32.9
BcaC07g38889 Brassica carinata HOM05D007723 ORTHO05D010327 5.7e-09 67.0 112 36.6
BolC5t31064H Brassica oleracea HOM05D007723 ORTHO05D000001 5.7e-09 67.0 48 64.6
COL.COLO4_10661 Corchorus olitorius HOM05D003926 ORTHO05D018213 1.3e-08 65.9 130 36.9
Sabra04G0148900 Salix brachista HOM05D000428 ORTHO05D000582 2.8e-08 64.7 204 26.0
AT3G48840 Arabidopsis thaliana HOM05D007723 ORTHO05D010327 6.3e-08 63.5 129 33.3
ATR0691G267 Amborella trichopoda HOM05D003926 ORTHO05D005273 1.4e-07 62.4 267 24.7
ATR1101G059 Amborella trichopoda HOM05D003926 ORTHO05D005273 1.4e-07 62.4 265 23.4
BcaB06g25868 Brassica carinata HOM05D007723 ORTHO05D010327 1.4e-07 62.4 165 32.7
HPP92_020588 Vanilla planifolia HOM05D003926 ORTHO05D005273 3.1e-07 61.2 285 23.9
Rhsim11G0088700 Rhododendron simsii HOM05D000428 ORTHO05D000582 4.1e-07 60.8 266 25.6
SEGI_07483 Sequoiadendron giganteum HOM05D003926 ORTHO05D005273 4.1e-07 60.8 281 23.1
COL.COLO4_11452 Corchorus olitorius HOM05D000428 ORTHO05D000582 1.2e-06 59.3 245 23.7
Lj7C386T18 Lonicera japonica HOM05D000428 ORTHO05D000582 1.2e-06 59.3 259 23.2
Zm00001eb308350 Zea mays HOM05D003926 ORTHO05D005273 1.5e-06 58.9 246 26.0
ECA233G2795 Erigeron canadensis HOM05D000428 ORTHO05D000566 2.6e-06 58.2 198 25.3
Eucgr.F03089 Eucalyptus grandis HOM05D000428 ORTHO05D000582 2.6e-06 58.2 228 25.4
BolC8t49452H Brassica oleracea HOM05D007723 ORTHO05D010327 3.4e-06 57.8 63 46.0
Glyma.16G160800 Glycine max HOM05D000428 ORTHO05D000582 3.4e-06 57.8 274 23.4
MBI04_g42206_MAGBIO Magnolia biondii HOM05D000428 ORTHO05D000582 3.4e-06 57.8 255 22.4
Aa31LG7G13620 Aethionema arabicum HOM05D000428 ORTHO05D000582 5.9e-06 57.0 265 23.0
Gohir.D02G208500 Gossypium hirsutum HOM05D000428 ORTHO05D000582 5.9e-06 57.0 252 24.2
Lj4A705G45 Lonicera japonica HOM05D000428 ORTHO05D000582 7.7e-06 56.6 258 21.7
Nn6g35117 Nelumbo nucifera HOM05D000428 ORTHO05D000582 7.7e-06 56.6 198 23.7


User provided reference genes

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