Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 0.0e+00 1341.3 705 100.0
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 0.0e+00 1242.3 715 93.3
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 0.0e+00 1204.5 712 90.9
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 0.0e+00 1201.0 712 90.7
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 6.8e-248 860.9 734 67.3
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 4.1e-221 771.9 743 61.4
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 1.1e-208 730.7 718 60.0
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 4.4e-207 725.3 731 60.5
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 2.4e-205 719.5 689 61.1
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 1.6e-143 514.2 650 52.2
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 1.8e-120 437.6 765 41.2
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 5.2e-107 392.9 376 59.6
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 4.4e-106 389.8 377 58.4
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 1.7e-105 387.9 504 46.8
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 1.1e-104 385.2 377 59.7
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 2.4e-104 384.0 374 59.6
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 9.2e-104 382.1 380 58.4
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 9.2e-104 382.1 429 54.1
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 6.0e-103 379.4 379 58.8
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 6.0e-103 379.4 379 58.8
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 1.5e-101 374.8 548 46.5
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 1.4e-99 368.2 548 46.5
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 7.6e-98 362.5 662 41.1
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 3.5e-95 353.6 701 39.1
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 2.4e-75 287.7 477 40.0
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 2.0e-74 284.6 458 39.7
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.1e-69 268.9 402 42.5
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 1.1e-69 268.9 647 33.4
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 2.5e-69 267.7 558 35.5
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 4.3e-69 266.9 474 37.3
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 9.6e-69 265.8 437 39.6
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 3.7e-68 263.8 609 35.1
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 1.1e-67 262.3 478 37.0
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.5e-66 258.5 650 32.6
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 1.0e-65 255.8 437 38.0
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 2.2e-65 254.6 561 32.8
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 3.8e-65 253.8 477 35.4
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 3.8e-65 253.8 456 37.9
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 8.4e-65 252.7 653 32.5
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.1e-64 252.3 653 32.5
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 7.1e-64 249.6 703 33.0
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 7.1e-64 249.6 662 32.8
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 9.3e-64 249.2 464 35.1
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 1.6e-63 248.4 408 36.8
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 1.6e-63 248.4 486 36.8
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 2.1e-63 248.1 441 38.5
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 2.1e-63 248.1 723 31.7
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 4.6e-63 246.9 508 33.9
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 6.0e-63 246.5 411 37.5
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 7.9e-63 246.1 489 37.0
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 1.3e-62 245.4 450 35.3
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 1.8e-62 245.0 470 35.5
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 1.8e-62 245.0 466 36.9
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 2.3e-62 244.6 425 37.2
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 6.7e-62 243.0 411 35.3
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 2.5e-61 241.1 418 35.2
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 3.3e-61 240.7 410 39.3
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 4.3e-61 240.4 403 38.7
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 7.4e-61 239.6 504 34.5
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 7.4e-61 239.6 637 30.1
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 7.4e-61 239.6 704 30.1
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 9.7e-61 239.2 504 34.3
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 1.3e-60 238.8 590 33.9
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 1.3e-60 238.8 514 35.4
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 1.6e-60 238.4 513 34.3
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 4.8e-60 236.9 502 33.7
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 6.3e-60 236.5 469 33.5
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 8.2e-60 236.1 592 32.8
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 1.1e-59 235.7 424 36.6
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 1.1e-59 235.7 415 35.7
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 1.4e-59 235.3 428 37.6
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 1.8e-59 235.0 664 31.8
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 2.4e-59 234.6 612 33.3
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 1.5e-58 231.9 652 30.4
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 2.0e-58 231.5 487 35.1
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 2.6e-58 231.1 416 36.8
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 2.9e-57 227.6 434 35.7
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 3.8e-57 227.3 375 40.0
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 1.1e-56 225.7 486 33.5
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 2.5e-56 224.6 559 32.9
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 7.2e-56 223.0 619 30.0
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.2e-55 222.2 634 32.3
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 2.1e-55 221.5 433 34.2
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 2.1e-55 221.5 619 29.1
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 3.6e-55 220.7 410 37.3
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 4.6e-55 220.3 390 34.6
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 4.6e-55 220.3 647 32.3
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 1.4e-54 218.8 634 30.6
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 5.1e-54 216.9 663 30.8
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 8.8e-54 216.1 419 34.8
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 2.5e-53 214.5 543 33.9
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 5.7e-53 213.4 431 34.1
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 7.4e-53 213.0 442 33.9
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 7.4e-53 213.0 374 35.6
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 9.7e-53 212.6 766 29.2
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 9.7e-53 212.6 761 29.2
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 1.3e-52 212.2 468 32.7
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 1.7e-52 211.8 417 34.3
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 1.7e-52 211.8 593 31.2
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 2.2e-52 211.5 640 29.5
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 2.8e-52 211.1 411 36.0
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 3.7e-52 210.7 372 37.9
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 3.7e-52 210.7 754 28.5
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 3.7e-52 210.7 403 34.7
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 6.3e-52 209.9 763 28.7
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 6.3e-52 209.9 604 30.5
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 6.3e-52 209.9 487 32.2
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 8.2e-52 209.5 427 34.2
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 1.1e-51 209.1 509 33.8
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 1.8e-51 208.4 636 30.5
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 3.1e-51 207.6 571 31.0
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 2.0e-50 204.9 495 31.5
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 4.5e-50 203.8 638 31.0
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 4.5e-50 203.8 652 30.4
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 1.7e-49 201.8 617 32.4
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 1.7e-49 201.8 536 33.0
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 5.5e-48 196.8 567 30.2
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.7e-47 194.5 701 29.1
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 3.6e-47 194.1 466 30.3
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 1.1e-45 189.1 347 35.7
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 7.0e-43 179.9 392 32.4
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 3.4e-42 177.6 600 29.0
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 6.5e-41 173.3 215 44.2
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 1.0e-38 166.0 385 34.3
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 8.8e-38 162.9 654 29.1
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 1.5e-37 162.2 811 26.3
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 3.3e-37 161.0 344 34.0
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 4.4e-37 160.6 728 27.1
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 1.8e-35 155.2 690 27.1
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 7.0e-35 153.3 449 30.7
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 1.6e-34 152.1 208 38.9
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 4.2e-32 144.1 107 67.3
BcaB07g30913 Brassica carinata HOM05D004295 ORTHO05D004901 1.6e-31 142.1 162 55.6
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 8.0e-31 139.8 415 31.3
BcaB05g24188 Brassica carinata HOM05D004295 ORTHO05D004901 1.4e-30 139.0 158 55.7
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 6.3e-28 130.2 253 36.0
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 1.8e-27 128.6 186 35.5
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 2.0e-26 125.2 358 30.2
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 1.5e-24 119.0 103 59.2
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 1.2e-23 115.9 405 27.7
BcaB06g28413 Brassica carinata HOM05D004295 ORTHO05D004901 2.1e-23 115.2 152 50.7
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 2.1e-23 115.2 125 49.6
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 2.7e-23 114.8 82 72.0
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 4.7e-23 114.0 103 56.3
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 2.0e-21 108.6 101 51.5
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 3.4e-21 107.8 579 26.6
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 2.4e-19 101.7 91 56.0
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.4e-19 101.7 95 56.8
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 4.1e-19 100.9 95 53.7
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.5e-16 91.7 103 43.7
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 5.2e-14 84.0 343 23.3
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 3.4e-13 81.3 70 57.1
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 3.4e-13 81.3 100 40.0
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 3.7e-12 77.8 68 42.6
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 4.1e-11 74.3 66 39.4
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 7.8e-10 70.1 101 30.7
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 5.0e-09 67.4 52 61.5
AagrBONN_evm.TU.Sc2ySwM_117.2758 Anthoceros agrestis HOM05D059405 ORTHO05D004901 1.1e-08 66.2 349 21.8
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 4.7e-07 60.8 62 38.7
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 2.3e-06 58.5 345 18.8
AagrBONN_evm.TU.Sc2ySwM_340.1970 Anthoceros agrestis HOM05D000465 ORTHO05D000301 4.0e-06 57.8 64 45.3


User provided reference genes

Program Settings