Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 1.4e-173 612.8 316 100.0
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 7.2e-133 477.6 273 92.7
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 1.3e-129 466.8 260 93.8
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 3.5e-127 458.8 261 93.1
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 3.5e-127 458.8 261 93.1
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 3.5e-127 458.8 259 92.7
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 1.5e-125 453.4 264 89.4
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 5.2e-123 444.9 266 88.0
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 8.9e-123 444.1 259 88.4
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 4.4e-122 441.8 270 86.7
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 4.9e-121 438.3 270 86.3
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 2.4e-120 436.0 262 88.9
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 3.5e-119 432.2 259 87.6
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 3.9e-118 428.7 259 87.3
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 9.5e-117 424.1 261 86.2
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 1.4e-112 410.2 260 84.2
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 4.1e-112 408.7 261 83.1
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 7.0e-112 407.9 264 83.0
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 2.0e-111 406.4 260 84.2
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 5.6e-109 398.3 265 80.8
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 2.3e-107 392.9 261 80.5
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 3.1e-107 392.5 257 82.9
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 5.8e-106 388.3 235 83.8
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 7.5e-106 387.9 258 80.6
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 1.3e-105 387.1 239 85.4
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 6.8e-99 364.8 245 78.4
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 6.8e-99 364.8 259 75.7
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 2.0e-98 363.2 243 75.7
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 3.4e-98 362.5 259 74.9
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 1.7e-97 360.1 252 73.8
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 1.4e-96 357.1 255 73.3
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 1.4e-96 357.1 248 75.8
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 3.2e-96 355.9 199 87.9
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 4.1e-96 355.5 220 80.9
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 5.4e-96 355.1 230 78.3
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 9.2e-96 354.4 223 80.7
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 9.2e-96 354.4 224 79.5
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.6e-95 353.6 220 81.4
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 2.1e-95 353.2 229 78.6
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 2.7e-95 352.8 205 85.4
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 3.5e-95 352.4 251 74.5
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 6.0e-95 351.7 266 70.7
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 6.0e-95 351.7 223 80.7
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 6.0e-95 351.7 214 81.8
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 6.0e-95 351.7 239 77.0
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 6.0e-95 351.7 199 87.4
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 7.8e-95 351.3 225 79.1
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 7.8e-95 351.3 223 80.7
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 1.0e-94 350.9 256 73.0
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 1.3e-94 350.5 231 78.8
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 1.7e-94 350.1 239 76.6
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 1.7e-94 350.1 223 80.3
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 1.7e-94 350.1 233 75.5
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 1.7e-94 350.1 192 88.0
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 1.7e-94 350.1 242 76.9
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 1.7e-94 350.1 214 81.8
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 2.3e-94 349.7 233 74.7
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 3.0e-94 349.4 216 80.6
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 3.9e-94 349.0 260 70.4
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 3.9e-94 349.0 227 79.3
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 8.6e-94 347.8 208 83.2
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 8.6e-94 347.8 233 74.2
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 1.5e-93 347.1 257 72.4
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.9e-93 346.7 209 81.3
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 5.6e-93 345.1 222 80.2
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 7.3e-93 344.7 214 82.2
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 7.3e-93 344.7 220 77.7
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 1.6e-92 343.6 221 77.8
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 2.1e-92 343.2 215 80.9
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 2.1e-92 343.2 258 72.5
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 2.8e-92 342.8 229 76.4
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 2.8e-92 342.8 250 72.4
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 2.8e-92 342.8 258 70.9
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 2.8e-92 342.8 256 71.5
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 3.6e-92 342.4 257 69.6
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 4.7e-92 342.0 237 75.5
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 8.1e-92 341.3 240 75.4
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 8.1e-92 341.3 214 79.4
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 8.1e-92 341.3 239 72.0
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 1.1e-91 340.9 229 75.5
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.4e-91 340.5 250 72.0
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 2.4e-91 339.7 250 71.6
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 4.0e-91 339.0 254 69.7
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 5.2e-91 338.6 208 80.8
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 5.2e-91 338.6 191 84.3
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 6.8e-91 338.2 258 69.0
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 6.8e-91 338.2 257 69.6
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 8.9e-91 337.8 203 83.7
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 1.2e-90 337.4 215 76.7
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 1.5e-90 337.0 213 78.4
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 1.5e-90 337.0 260 71.2
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 2.0e-90 336.7 290 63.4
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 2.0e-90 336.7 210 81.4
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 2.6e-90 336.3 240 72.9
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 3.4e-90 335.9 201 81.1
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 4.4e-90 335.5 216 81.0
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 7.6e-90 334.7 209 78.5
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 9.9e-90 334.3 234 76.1
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 2.2e-89 333.2 216 76.4
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 2.2e-89 333.2 215 77.7
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 3.8e-89 332.4 233 73.8
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 4.9e-89 332.0 225 77.8
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 8.4e-89 331.3 216 75.5
GSVIVG01017973001 Vitis vinifera HOM05D004138 ORTHO05D004898 1.4e-88 330.5 216 76.4
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 1.9e-88 330.1 229 73.4
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 2.4e-88 329.7 208 77.9
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 5.4e-88 328.6 205 80.0
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 2.7e-87 326.2 264 68.2
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 4.6e-87 325.5 312 59.0
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 5.1e-86 322.0 219 73.1
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 6.6e-86 321.6 233 71.2
Pp3c13_21930 Physcomitrium patens HOM05D004138 ORTHO05D004898 6.6e-86 321.6 188 82.4
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 6.6e-86 321.6 228 73.2
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 2.1e-84 316.6 226 73.9
Mapoly0095s0045 Marchantia polymorpha HOM05D004138 ORTHO05D004898 8.1e-84 314.7 188 80.3
CBR_g48324 Chara braunii HOM05D004138 ORTHO05D004898 8.4e-81 304.7 188 79.3
Actinidia36959 Actinidia chinensis HOM05D004138 ORTHO05D004898 1.9e-80 303.5 246 67.9
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 1.0e-78 297.7 190 78.4
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 1.5e-77 293.9 264 62.5
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 1.5e-77 293.9 196 75.0
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 1.5e-77 293.9 243 68.3
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 1.9e-77 293.5 236 68.2
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.5e-77 293.1 213 70.0
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 1.1e-75 287.7 156 87.8
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 4.5e-74 282.3 171 78.9
SMO367G0933 Selaginella moellendorffii HOM05D004138 ORTHO05D004898 3.8e-73 279.3 228 63.6
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 4.2e-72 275.8 156 85.9
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 7.1e-72 275.0 153 85.6
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 6.0e-71 271.9 165 77.6
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 6.7e-70 268.5 162 81.5
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 6.7e-70 268.5 227 63.9
Cre02.g103850 Chlamydomonas reinhardtii HOM05D004138 ORTHO05D004898 1.6e-68 263.8 231 60.2
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 1.6e-68 263.8 216 65.7
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 8.1e-68 261.5 159 81.1
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 5.3e-67 258.8 156 82.7
SEGI_10012 Sequoiadendron giganteum HOM05D004138 ORTHO05D004898 1.5e-66 257.3 150 80.7
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.7e-65 253.8 149 85.2
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 8.4e-65 251.5 151 79.5
Peaxi162Scf00092g01021 Petunia axillaris HOM05D004138 ORTHO05D004898 1.4e-64 250.8 207 65.2
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 6.0e-63 245.4 214 64.5
MBI06_g26001_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 7.9e-63 245.0 242 57.4
MBI06_g37250_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 5.1e-62 242.3 208 63.0
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 6.7e-62 241.9 170 73.5
HPP92_026352 Vanilla planifolia HOM05D004138 ORTHO05D004898 6.7e-62 241.9 191 65.4
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 6.5e-57 225.3 134 78.4
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 5.1e-54 215.7 163 71.8
CDE10G0981 Ceratophyllum demersum HOM05D000366 ORTHO05D000437 5.1e-54 215.7 225 56.9
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 5.7e-53 212.2 157 70.1
Haze_27397 Corylus avellana HOM05D004138 ORTHO05D004898 1.3e-52 211.1 222 45.9
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 3.8e-49 199.5 133 73.7
Sabra08G0116300 Salix brachista HOM05D004138 ORTHO05D004898 7.4e-45 185.3 360 38.6
ATR0661G018 Amborella trichopoda HOM05D004138 ORTHO05D004898 9.7e-45 184.9 140 67.1
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 4.7e-39 166.0 201 50.2
PRCOL_00007017 Prasinoderma coloniale HOM05D004138 ORTHO05D004898 2.0e-34 150.6 180 41.7
MCO15G615 Micromonas commoda HOM05D004138 ORTHO05D004898 4.2e-32 142.9 192 38.0
Cfa024592 Carpinus fangiana HOM05D004138 ORTHO05D004898 4.7e-31 139.4 203 39.4
Actinidia40147 Actinidia chinensis HOM05D004138 ORTHO05D004898 9.7e-29 131.7 84 79.8
Psat4g223320 Pisum sativum HOM05D004138 ORTHO05D004898 1.3e-20 104.8 128 54.7
arahy.Tifrunner.gnm1.ann1.UX9Z2U Arachis hypogaea HOM05D004138 ORTHO05D004898 3.7e-20 103.2 62 79.0
arahy.Tifrunner.gnm1.ann1.J4BC6Z Arachis hypogaea HOM05D004138 ORTHO05D004898 1.8e-19 100.9 62 77.4
Medtr8g045710 Medicago truncatula HOM05D004138 ORTHO05D004898 5.0e-17 92.8 58 77.6
Rhsim02G0025000 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.7e-12 77.8 41 90.2
CARHR221520 Cardamine hirsuta HOM05D004138 ORTHO05D004898 2.8e-12 77.0 58 74.1
CSS0002625 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 2.0e-10 70.9 36 86.1
AL5G12050 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 5.9e-10 69.3 36 83.3
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 7.7e-10 68.9 39 84.6
Medtr1g071390 Medicago truncatula HOM05D004138 ORTHO05D004898 1.0e-09 68.6 118 37.3
Actinidia40148 Actinidia chinensis HOM05D004138 ORTHO05D004898 5.0e-09 66.2 68 57.4
arahy.Tifrunner.gnm1.ann1.RWV13Y Arachis hypogaea HOM05D000351 ORTHO05D018478 7.2e-08 62.4 32 87.5
CSS0029286 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.2e-07 61.6 42 66.7
CSS0040239 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 8.0e-07 58.9 34 76.5
Rhsim08G0128300 Rhododendron simsii HOM05D004138 ORTHO05D339665 1.8e-06 57.8 109 36.7


User provided reference genes

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