Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p25210 Brassica napus HOM05D000504 ORTHO05D021083 1.9e-59 232.3 115 100.0
A10p18910 Brassica napus HOM05D000504 ORTHO05D021083 1.2e-58 229.6 115 98.3
A07p22370 Brassica napus HOM05D000504 ORTHO05D021083 3.0e-44 181.8 92 96.7
BraA07t29912Z Brassica rapa HOM05D000504 ORTHO05D021083 3.0e-44 181.8 92 96.7
BcaC04g20255 Brassica carinata HOM05D000504 ORTHO05D000403 1.8e-12 76.3 77 61.0
A10p12500 Brassica napus HOM05D000504 ORTHO05D000403 1.8e-12 76.3 77 61.0
C09p45750 Brassica napus HOM05D000504 ORTHO05D000403 1.8e-12 76.3 77 61.0
BolC9t57453H Brassica oleracea HOM05D000504 ORTHO05D000403 1.8e-12 76.3 77 61.0
BraA10t43344Z Brassica rapa HOM05D000504 ORTHO05D000403 1.8e-12 76.3 77 61.0
Aa31LG5G12170 Aethionema arabicum HOM05D000504 ORTHO05D000403 5.1e-12 74.7 63 68.3
BcaB08g35884 Brassica carinata HOM05D000504 ORTHO05D000403 5.1e-12 74.7 77 59.7
Aa31LG3G11220 Aethionema arabicum HOM05D000504 ORTHO05D000403 6.7e-12 74.3 77 59.7
BcaC03g14250 Brassica carinata HOM05D000504 ORTHO05D000403 6.7e-12 74.3 77 59.7
Thhalv10013064m.g Eutrema salsugineum HOM05D000504 ORTHO05D000403 6.7e-12 74.3 77 59.7
Potri.001G356500 Populus trichocarpa HOM05D000504 ORTHO05D000403 8.8e-12 73.9 73 63.0
BcaB05g22195 Brassica carinata HOM05D000504 ORTHO05D000403 1.5e-11 73.2 77 59.7
BolC3t14076H Brassica oleracea HOM05D000504 ORTHO05D000403 1.5e-11 73.2 77 59.7
Sp6g17160 Schrenkiella parvula HOM05D000504 ORTHO05D000403 1.5e-11 73.2 77 58.4
Carub.0007s1408 Capsella rubella HOM05D000504 ORTHO05D000403 2.5e-11 72.4 77 57.1
Gorai.013G157400 Gossypium raimondii HOM05D000504 ORTHO05D000403 2.5e-11 72.4 63 68.3
CARHR268590 Cardamine hirsuta HOM05D000504 ORTHO05D000403 3.3e-11 72.0 77 57.1
Cpa.g.sc284.3 Carica papaya HOM05D000504 ORTHO05D000403 3.3e-11 72.0 63 66.7
Cpa.g.sc50.87 Carica papaya HOM05D000504 ORTHO05D000403 3.3e-11 72.0 63 66.7
Sabra11G0086800 Salix brachista HOM05D000504 ORTHO05D000403 3.3e-11 72.0 73 61.6
AL8G30780 Arabidopsis lyrata HOM05D000504 ORTHO05D000403 4.3e-11 71.6 77 58.4
BcaC01g06355 Brassica carinata HOM05D000504 ORTHO05D000403 4.3e-11 71.6 77 58.4
BcaC01g06361 Brassica carinata HOM05D000504 ORTHO05D000403 4.3e-11 71.6 77 58.4
COL.COLO4_09737 Corchorus olitorius HOM05D000504 ORTHO05D000403 4.3e-11 71.6 63 66.7
Manes.03G136400 Manihot esculenta HOM05D000504 ORTHO05D000403 4.3e-11 71.6 63 66.7
Manes.15G066200 Manihot esculenta HOM05D000504 ORTHO05D000403 4.3e-11 71.6 63 66.7
Potri.011G092500 Populus trichocarpa HOM05D000504 ORTHO05D000403 4.3e-11 71.6 73 61.6
BraA02t06042Z Brassica rapa HOM05D000504 ORTHO05D000403 5.7e-11 71.2 77 57.1
Gohir.A01G084700 Gossypium hirsutum HOM05D000504 ORTHO05D000403 5.7e-11 71.2 63 65.1
Gohir.D01G071100 Gossypium hirsutum HOM05D000504 ORTHO05D000403 5.7e-11 71.2 63 65.1
Gorai.002G093800 Gossypium raimondii HOM05D000504 ORTHO05D000403 5.7e-11 71.2 63 65.1
BcaC02g10626 Brassica carinata HOM05D000504 ORTHO05D021083 7.4e-11 70.9 55 63.6
Gohir.A13G136400 Gossypium hirsutum HOM05D000504 ORTHO05D000403 7.4e-11 70.9 63 66.7
Gohir.D13G140800 Gossypium hirsutum HOM05D000504 ORTHO05D000403 7.4e-11 70.9 63 66.7
QL08p007484 Quercus lobata HOM05D000504 ORTHO05D000403 7.4e-11 70.9 65 63.1
TWI38G1283 Tripterygium wilfordii HOM05D000504 ORTHO05D000403 7.4e-11 70.9 63 66.7
AT4G26760 Arabidopsis thaliana HOM05D000504 ORTHO05D000403 9.7e-11 70.5 77 57.1
BcaB03g12508 Brassica carinata HOM05D000504 ORTHO05D000403 9.7e-11 70.5 77 57.1
Thhalv10024776m.g Eutrema salsugineum HOM05D000504 ORTHO05D000403 9.7e-11 70.5 77 57.1
Sp7g24740 Schrenkiella parvula HOM05D000504 ORTHO05D000403 9.7e-11 70.5 77 57.1
BcaC07g38249 Brassica carinata HOM05D000504 ORTHO05D000403 1.3e-10 70.1 77 57.1
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 1.3e-10 70.1 77 57.1
A08p20720 Brassica napus HOM05D000504 ORTHO05D000403 1.3e-10 70.1 77 57.1
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 1.3e-10 70.1 77 57.1
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 1.3e-10 70.1 77 57.1
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 1.3e-10 70.1 77 57.1
BraA08t34026Z Brassica rapa HOM05D000504 ORTHO05D000403 1.3e-10 70.1 77 57.1
Carub.0008s1558 Capsella rubella HOM05D000504 ORTHO05D000403 1.3e-10 70.1 77 57.1
Duzib170G1001 Durio zibethinus HOM05D000504 ORTHO05D000403 1.3e-10 70.1 63 65.1
Thecc.07G028000 Theobroma cacao HOM05D000504 ORTHO05D000403 1.3e-10 70.1 63 65.1
CARHR234380 Cardamine hirsuta HOM05D000504 ORTHO05D000403 1.7e-10 69.7 77 55.8
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 2.2e-10 69.3 77 55.8
BolC1t02213H Brassica oleracea HOM05D000504 ORTHO05D000403 2.2e-10 69.3 77 55.8
CANSAT11G1713 Cannabis sativa HOM05D000504 ORTHO05D000403 2.2e-10 69.3 65 61.5
Duzib268G0980 Durio zibethinus HOM05D000504 ORTHO05D000403 2.2e-10 69.3 73 58.9
TWI38G1425 Tripterygium wilfordii HOM05D000504 ORTHO05D000403 2.2e-10 69.3 63 65.1
AL7G26070 Arabidopsis lyrata HOM05D000504 ORTHO05D000403 2.8e-10 68.9 77 55.8
AT5G55230 Arabidopsis thaliana HOM05D000504 ORTHO05D000403 2.8e-10 68.9 77 55.8
Ca_06348_v3 Cicer arietinum L. HOM05D000504 ORTHO05D000403 2.8e-10 68.9 63 65.1
Glyma.02G295100 Glycine max HOM05D000504 ORTHO05D000403 2.8e-10 68.9 63 65.1
Glyma.14G018300 Glycine max HOM05D000504 ORTHO05D000403 2.8e-10 68.9 63 65.1
Glyma.14G018550 Glycine max HOM05D000504 ORTHO05D000403 2.8e-10 68.9 64 64.1
Phvul.008G272600 Phaseolus vulgaris HOM05D000504 ORTHO05D000403 2.8e-10 68.9 63 65.1
VMungo0647G1113 Vigna mungo HOM05D000504 ORTHO05D000403 2.8e-10 68.9 63 65.1
A03p14170 Brassica napus HOM05D000504 ORTHO05D000403 3.7e-10 68.6 77 57.1
BraA03t10718Z Brassica rapa HOM05D000504 ORTHO05D000403 3.7e-10 68.6 77 57.1
Duzib213G0823 Durio zibethinus HOM05D000504 ORTHO05D000403 4.8e-10 68.2 63 63.5
THA.LOC104817685 Tarenaya hassleriana HOM05D000504 ORTHO05D000403 4.8e-10 68.2 77 57.1
Cfa020277 Carpinus fangiana HOM05D000504 ORTHO05D000403 6.3e-10 67.8 63 63.5
TPR.G35364 Trifolium pratense HOM05D000504 ORTHO05D000403 6.3e-10 67.8 63 63.5
Aqoxy1G02851 Aquilegia oxysepala HOM05D000504 ORTHO05D000403 8.2e-10 67.4 63 60.3
arahy.Tifrunner.gnm1.ann1.08S4VV Arachis hypogaea HOM05D000504 ORTHO05D000403 8.2e-10 67.4 63 63.5
arahy.Tifrunner.gnm1.ann1.W5YCET Arachis hypogaea HOM05D000504 ORTHO05D000403 8.2e-10 67.4 63 63.5
CiPaw.11G194700 Carya illinoinensis HOM05D000504 ORTHO05D000403 8.2e-10 67.4 63 63.5
Haze_09746 Corylus avellana HOM05D000504 ORTHO05D000403 8.2e-10 67.4 63 63.5
Lalb_Chr00c48g0412991 Lupinus albus HOM05D000504 ORTHO05D000403 1.1e-09 67.0 63 63.5
Lalb_Chr04g0248141 Lupinus albus HOM05D000504 ORTHO05D000403 1.1e-09 67.0 63 63.5
Nn1g03336 Nelumbo nucifera HOM05D000504 ORTHO05D000403 1.1e-09 67.0 63 61.9
Eucgr.F03505 Eucalyptus grandis HOM05D000504 ORTHO05D000403 1.4e-09 66.6 63 61.9
Lj6g0003977 Lotus japonicus HOM05D000504 ORTHO05D000403 1.4e-09 66.6 63 61.9
Medtr5g093860 Medicago truncatula HOM05D000504 ORTHO05D000403 1.8e-09 66.2 63 61.9
TWI39G0703 Tripterygium wilfordii HOM05D000504 ORTHO05D000403 1.8e-09 66.2 63 61.9
BcaB01g04348 Brassica carinata HOM05D000504 ORTHO05D000403 2.4e-09 65.9 76 55.3
ClCG10G005060 Citrullus lanatus HOM05D000504 ORTHO05D000403 2.4e-09 65.9 79 55.7
Atru.chr2.3533 Acer truncatum HOM05D000504 ORTHO05D000403 3.1e-09 65.5 63 60.3
Atru.chr2.3552 Acer truncatum HOM05D000504 ORTHO05D000403 3.1e-09 65.5 63 60.3
Sc16g0005730 Simmondsia chinensis HOM05D000504 ORTHO05D000403 3.1e-09 65.5 64 59.4
TAR627G1142 Trochodendron aralioides HOM05D000504 ORTHO05D000403 3.1e-09 65.5 63 61.9
Aqoxy1G04124 Aquilegia oxysepala HOM05D000504 ORTHO05D000403 5.3e-09 64.7 63 58.7
Dinv22230 Davidia involucrata HOM05D000504 ORTHO05D000403 5.3e-09 64.7 63 60.3
Psat2g009880 Pisum sativum HOM05D000504 ORTHO05D000403 5.3e-09 64.7 63 60.3
GSVIVG01037727001 Vitis vinifera HOM05D000504 ORTHO05D000403 5.3e-09 64.7 63 61.9
Nn1g07349 Nelumbo nucifera HOM05D000504 ORTHO05D000403 9.1e-09 63.9 63 57.1
Ciclev10007823m.g Citrus clementina HOM05D000504 ORTHO05D000403 1.2e-08 63.5 63 58.7
TAR629G1685 Trochodendron aralioides HOM05D000504 ORTHO05D000403 1.2e-08 63.5 63 58.7
TAR624G0252 Trochodendron aralioides HOM05D000504 ORTHO05D000403 1.5e-08 63.2 63 58.7
CiPaw.12G133700 Carya illinoinensis HOM05D000504 ORTHO05D000403 2.0e-08 62.8 63 63.5
Prupe.4G223500 Prunus persica HOM05D000504 ORTHO05D000403 2.0e-08 62.8 63 60.3
BcaC09g52263 Brassica carinata HOM05D000504 ORTHO05D000403 3.4e-08 62.0 58 62.1
Gohir.A04G011800 Gossypium hirsutum HOM05D000504 ORTHO05D000403 3.4e-08 62.0 61 59.0
Gohir.D05G374800 Gossypium hirsutum HOM05D000504 ORTHO05D000403 3.4e-08 62.0 61 60.7
Gorai.009G443700 Gossypium raimondii HOM05D000504 ORTHO05D000403 3.4e-08 62.0 61 60.7
PGR083G2239 Punica granatum HOM05D000504 ORTHO05D000403 3.4e-08 62.0 63 57.1
VMungo0540G1636 Vigna mungo HOM05D000504 ORTHO05D000403 3.4e-08 62.0 63 57.1
FvH4_3g23560 Fragaria vesca HOM05D000504 ORTHO05D000403 4.5e-08 61.6 62 62.9
FAN11G2999 Fragaria x ananassa HOM05D000504 ORTHO05D000403 4.5e-08 61.6 62 62.9
FAN16G1077 Fragaria x ananassa HOM05D000504 ORTHO05D000403 4.5e-08 61.6 62 62.9
FAN21G1246 Fragaria x ananassa HOM05D000504 ORTHO05D000403 4.5e-08 61.6 62 62.9
FAN25G0924 Fragaria x ananassa HOM05D000504 ORTHO05D000403 4.5e-08 61.6 62 62.9
Lsat_1_v5_gn_5_2560 Lactuca sativa HOM05D000504 ORTHO05D000403 4.5e-08 61.6 63 58.7
Lalb_Chr15g0081761 Lupinus albus HOM05D000504 ORTHO05D000403 4.5e-08 61.6 63 60.3
MD11G1209400 Malus domestica HOM05D000504 ORTHO05D000403 4.5e-08 61.6 63 58.7
RcHm_v2.0_Chr5g0041551 Rosa chinensis HOM05D000504 ORTHO05D000403 4.5e-08 61.6 62 62.9
Sed0026370 Sechium edule HOM05D000504 ORTHO05D000403 4.5e-08 61.6 79 53.2
Lsat_1_v5_gn_9_90680 Lactuca sativa HOM05D000504 ORTHO05D000403 5.9e-08 61.2 63 58.7
Actinidia05061 Actinidia chinensis HOM05D000504 ORTHO05D000403 7.7e-08 60.8 63 57.1
Actinidia35370 Actinidia chinensis HOM05D000504 ORTHO05D021083 7.7e-08 60.8 63 58.7
Ah.06g182240 Amaranthus hybridus HOM05D000504 ORTHO05D000403 7.7e-08 60.8 63 58.7
Eucgr.F00650 Eucalyptus grandis HOM05D000504 ORTHO05D000403 7.7e-08 60.8 63 58.7
LjContig00272g0009729 Lotus japonicus HOM05D000504 ORTHO05D000403 7.7e-08 60.8 63 57.1
ATR1101G033 Amborella trichopoda HOM05D000504 ORTHO05D000403 1.0e-07 60.5 63 55.6
MELO3C014173.2 Cucumis melo HOM05D000504 ORTHO05D000403 1.0e-07 60.5 79 53.2
CsaV3_3G004740 Cucumis sativus L. HOM05D000504 ORTHO05D000403 1.0e-07 60.5 79 53.2
EL10Ac4g07690 Beta vulgaris HOM05D000504 ORTHO05D000403 1.7e-07 59.7 63 57.1
HanXRQChr11g0334321 Helianthus annuus HOM05D000504 ORTHO05D000403 1.7e-07 59.7 63 55.6
CSS0043012 Camellia sinensis var. sinensis HOM05D000504 ORTHO05D000403 2.2e-07 59.3 63 57.1
MD03G1193200 Malus domestica HOM05D000504 ORTHO05D000403 2.2e-07 59.3 63 57.1
PSO541G1543 Papaver somniferum HOM05D000504 ORTHO05D000403 2.2e-07 59.3 63 57.1
PSO675G3301 Papaver somniferum HOM05D000504 ORTHO05D000403 2.2e-07 59.3 63 57.1
unitig_85.g27332 Utricularia gibba HOM05D000504 ORTHO05D000403 3.8e-07 58.5 63 55.6
unitig_899.g15282 Utricularia gibba HOM05D000504 ORTHO05D000403 5.0e-07 58.2 63 55.6
ECA240G2312 Erigeron canadensis HOM05D000504 ORTHO05D000403 6.5e-07 57.8 99 46.5
Lalb_Chr20g0115891 Lupinus albus HOM05D000504 ORTHO05D000403 6.5e-07 57.8 53 64.2
Hund23197 Selenicereus undatus HOM05D000504 ORTHO05D000403 6.5e-07 57.8 63 57.1
ECA236G4244 Erigeron canadensis HOM05D000504 ORTHO05D000403 8.5e-07 57.4 78 48.7
Lalb_Chr17g0348711 Lupinus albus HOM05D000504 ORTHO05D000403 8.5e-07 57.4 63 55.6
CSS0035195 Camellia sinensis var. sinensis HOM05D000504 ORTHO05D000403 1.1e-06 57.0 63 55.6
Lsat_1_v5_gn_7_114541 Lactuca sativa HOM05D000504 ORTHO05D000403 1.1e-06 57.0 63 54.0
DCAR_022589 Daucus carota HOM05D000504 ORTHO05D000403 1.4e-06 56.6 63 54.0
HanXRQChr05g0159741 Helianthus annuus HOM05D000504 ORTHO05D000403 1.4e-06 56.6 63 54.0
DCAR_017105 Daucus carota HOM05D000504 ORTHO05D000403 2.5e-06 55.8 63 55.6
Migut.H01792 Erythranthe guttata HOM05D000504 ORTHO05D000403 2.5e-06 55.8 63 49.2
Solyc07g064970.4 Solanum lycopersicum HOM05D000504 ORTHO05D000403 2.5e-06 55.8 61 54.1
Sopen07g033170 Solanum pennellii HOM05D000504 ORTHO05D000403 2.5e-06 55.8 61 54.1
PGSC0003DMG400022299 Solanum tuberosum HOM05D000504 ORTHO05D000403 2.5e-06 55.8 61 54.1
Zm00001eb276140 Zea mays HOM05D000504 ORTHO05D000403 2.5e-06 55.8 55 60.0
HanXRQChr13g0408261 Helianthus annuus HOM05D000504 ORTHO05D000403 3.2e-06 55.5 55 60.0
Zm00001eb381470 Zea mays HOM05D000504 ORTHO05D000403 3.2e-06 55.5 56 60.7
Os06g0308300 Oryza sativa ssp. japonica HOM05D000504 ORTHO05D000403 4.2e-06 55.1 56 60.7
Os06g0611000 Oryza sativa ssp. japonica HOM05D000504 ORTHO05D000403 4.2e-06 55.1 55 58.2
Migut.M01706 Erythranthe guttata HOM05D000504 ORTHO05D000403 7.2e-06 54.3 63 49.2
Phvul.006G048500 Phaseolus vulgaris HOM05D000504 ORTHO05D000403 7.2e-06 54.3 55 58.2
HPP92_017979 Vanilla planifolia HOM05D000504 ORTHO05D000403 7.2e-06 54.3 63 50.8
HPP92_026712 Vanilla planifolia HOM05D000504 ORTHO05D000403 7.2e-06 54.3 63 50.8
Zm00001eb281210 Zea mays HOM05D000504 ORTHO05D000403 9.4e-06 53.9 56 58.9


User provided reference genes

Program Settings