Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 6.0e-306 1053.5 576 100.0
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 6.0e-306 1053.5 576 100.0
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 8.4e-284 979.9 597 89.8
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 3.9e-281 971.1 595 89.4
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 1.4e-275 952.6 599 88.3
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 3.8e-252 874.8 587 85.7
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 2.2e-223 779.2 673 70.3
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 1.5e-211 740.0 640 71.1
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 1.6e-197 693.3 602 70.1
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 2.5e-195 686.0 603 69.0
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 3.4e-192 675.6 624 68.4
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 5.4e-182 641.7 596 68.8
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 1.2e-152 544.3 631 53.9
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 6.3e-122 442.2 469 56.3
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 3.0e-116 423.3 447 55.7
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 3.7e-114 416.4 465 54.8
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 1.4e-113 414.5 437 56.3
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 5.4e-113 412.5 433 55.9
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 1.2e-107 394.8 692 40.0
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.3e-106 391.3 446 53.4
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 8.3e-106 388.7 397 57.2
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 5.4e-105 386.0 392 57.4
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 4.6e-104 382.9 431 53.4
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 1.3e-103 381.3 379 58.8
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 3.9e-103 379.8 376 58.5
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.6e-85 321.2 498 41.0
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 5.8e-83 312.8 453 43.9
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 7.6e-83 312.4 498 40.2
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 7.6e-83 312.4 498 40.2
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 2.9e-82 310.5 442 43.4
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 1.4e-81 308.1 476 40.8
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 5.4e-81 306.2 478 40.2
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 7.1e-81 305.8 482 39.8
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 3.9e-79 300.1 475 39.8
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 4.3e-78 296.6 551 37.9
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 9.6e-78 295.4 460 37.8
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 8.1e-77 292.4 468 39.7
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 1.1e-76 292.0 476 39.5
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 2.4e-76 290.8 430 40.2
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.4e-76 290.8 430 40.2
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 3.1e-76 290.4 502 39.2
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 4.0e-76 290.0 468 39.5
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 4.0e-76 290.0 459 40.1
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 5.3e-76 289.7 428 40.4
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 5.3e-76 289.7 456 40.6
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 9.0e-76 288.9 471 37.6
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 1.5e-75 288.1 468 41.5
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 1.5e-75 288.1 472 38.3
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.5e-75 288.1 429 41.0
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 1.5e-75 288.1 499 38.7
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 2.0e-75 287.7 475 38.9
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 2.0e-75 287.7 501 38.5
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 3.4e-75 287.0 485 37.5
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 4.5e-75 286.6 418 42.1
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 7.6e-75 285.8 455 40.0
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 1.7e-74 284.6 451 38.4
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 3.8e-74 283.5 463 40.2
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 3.8e-74 283.5 481 38.0
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.9e-73 281.2 428 40.0
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 5.4e-73 279.6 495 41.6
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 7.1e-73 279.3 438 39.5
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 2.1e-72 277.7 459 40.7
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 2.7e-72 277.3 471 38.9
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 2.7e-72 277.3 501 37.5
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 2.7e-72 277.3 619 34.7
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 7.9e-72 275.8 466 38.6
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 1.3e-71 275.0 475 38.1
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 3.0e-71 273.9 449 38.8
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 3.9e-71 273.5 440 40.2
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 3.9e-71 273.5 440 38.6
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 5.1e-71 273.1 474 37.8
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.9e-70 271.2 461 38.0
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 3.3e-70 270.4 470 38.1
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 3.3e-70 270.4 445 38.4
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 4.3e-70 270.0 440 38.4
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 1.6e-69 268.1 490 38.8
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 6.2e-69 266.2 495 37.6
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 1.1e-68 265.4 454 38.1
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 3.1e-68 263.8 467 38.1
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 6.9e-68 262.7 499 35.9
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 6.9e-68 262.7 510 36.7
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 9.0e-68 262.3 468 36.8
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 1.5e-67 261.5 506 36.0
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 2.0e-67 261.2 487 36.6
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 9.9e-67 258.8 468 37.2
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 3.8e-66 256.9 518 34.7
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 3.8e-66 256.9 448 38.4
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 3.8e-66 256.9 457 38.7
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 1.1e-65 255.4 451 37.5
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 1.9e-65 254.6 409 39.4
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 2.4e-65 254.2 441 36.5
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 2.4e-65 254.2 451 36.8
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 4.2e-65 253.4 440 37.5
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 5.5e-65 253.1 461 37.5
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 2.1e-64 251.1 443 35.9
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 3.5e-64 250.4 446 35.9
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 3.5e-64 250.4 513 34.9
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 4.6e-64 250.0 398 40.7
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 6.0e-64 249.6 445 36.4
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 7.9e-64 249.2 421 38.7
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 2.3e-63 247.7 464 37.9
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 2.3e-63 247.7 457 37.0
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 3.9e-63 246.9 436 38.1
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 6.7e-63 246.1 429 37.3
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.5e-62 245.0 398 39.7
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 2.5e-62 244.2 444 34.9
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 5.6e-62 243.0 424 37.5
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 7.4e-62 242.7 453 38.0
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 2.8e-61 240.7 452 35.6
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 3.7e-61 240.4 613 32.6
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 4.8e-61 240.0 431 37.8
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 6.9e-60 236.1 453 35.3
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 1.5e-59 235.0 390 39.2
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 2.6e-59 234.2 434 36.2
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 7.6e-59 232.6 430 37.4
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 8.4e-58 229.2 448 34.6
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 2.5e-57 227.6 457 33.7
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 4.6e-56 223.4 467 34.5
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 1.1e-52 212.2 364 37.1
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 1.8e-52 211.5 391 36.8
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 2.0e-51 208.0 469 32.0
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 3.6e-48 197.2 411 33.1
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 3.0e-47 194.1 452 32.3
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 4.5e-43 180.3 363 35.5
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 7.7e-43 179.5 375 35.2
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 2.2e-42 177.9 433 31.9
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 2.9e-42 177.6 209 47.4
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 8.5e-42 176.0 379 35.1
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 1.8e-39 168.3 401 31.2
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 7.4e-38 162.9 224 42.9
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 2.8e-37 161.0 214 45.3
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 3.1e-36 157.5 366 32.2
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 6.9e-36 156.4 238 39.5
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 2.0e-35 154.8 306 34.6
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 3.4e-35 154.1 301 36.5
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 3.2e-33 147.5 421 31.8
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 1.2e-32 145.6 550 26.5
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 1.0e-26 125.9 385 29.9
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 1.0e-26 125.9 240 33.8
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 2.5e-25 121.3 120 56.7
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 5.5e-25 120.2 151 45.7
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 7.2e-25 119.8 116 55.2
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 9.4e-25 119.4 120 55.8
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 9.4e-25 119.4 246 38.6
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.1e-20 105.9 120 53.3
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 1.2e-19 102.4 135 44.4
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 1.3e-18 99.0 85 62.4
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 8.0e-16 89.7 381 23.6
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.7e-13 82.0 454 24.9
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 2.8e-13 81.3 370 22.4
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 9.1e-12 76.3 72 38.9
BcaB05g24188 Brassica carinata HOM05D004295 ORTHO05D004901 2.0e-11 75.1 50 70.0
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 2.0e-11 75.1 106 34.9
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.7e-11 74.7 104 40.4
BcaB07g30913 Brassica carinata HOM05D004295 ORTHO05D004901 4.5e-11 73.9 50 68.0
AagrBONN_evm.TU.Sc2ySwM_117.2758 Anthoceros agrestis HOM05D059405 ORTHO05D004901 3.8e-10 70.9 359 20.9
AagrBONN_evm.TU.Sc2ySwM_344.2808 Anthoceros agrestis HOM05D004295 ORTHO05D004901 2.5e-09 68.2 363 24.0
BcaB06g28413 Brassica carinata HOM05D004295 ORTHO05D004901 1.0e-07 62.8 40 70.0
AagrBONN_evm.TU.Sc2ySwM_362.389 Anthoceros agrestis HOM05D000465 ORTHO05D000301 2.3e-07 61.6 74 40.5
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 4.0e-07 60.8 52 53.8
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-06 59.3 64 34.4
AagrBONN_evm.TU.Sc2ySwM_340.1970 Anthoceros agrestis HOM05D000465 ORTHO05D000301 9.8e-06 56.2 62 43.5


User provided reference genes

Program Settings