Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p19680 Brassica napus HOM05D000189 ORTHO05D007859 1.8e-75 285.8 140 100.0
BraA05t20873Z Brassica rapa HOM05D000189 ORTHO05D007859 7.5e-58 227.3 111 98.2
BcaB05g21570 Brassica carinata HOM05D000189 ORTHO05D007859 1.7e-46 189.5 98 91.8
BraA02t04966Z Brassica rapa HOM05D000189 ORTHO05D007859 2.8e-44 182.2 98 88.8
BcaC03g13240 Brassica carinata HOM05D000189 ORTHO05D007859 2.4e-43 179.1 99 86.9
Sp6g34160 Schrenkiella parvula HOM05D000189 ORTHO05D007859 2.4e-43 179.1 98 84.7
Thhalv10013591m.g Eutrema salsugineum HOM05D000189 ORTHO05D007859 8.9e-43 177.2 98 83.7
CARHR204300 Cardamine hirsuta HOM05D000189 ORTHO05D007859 1.5e-42 176.4 98 83.7
Carub.0006s0768 Capsella rubella HOM05D000189 ORTHO05D007859 3.4e-42 175.3 98 82.7
C02p03720 Brassica napus HOM05D000189 ORTHO05D007859 7.6e-42 174.1 99 84.8
BolC2t06332H Brassica oleracea HOM05D000189 ORTHO05D007859 7.6e-42 174.1 99 84.8
AT5G08710 Arabidopsis thaliana HOM05D000189 ORTHO05D007859 1.7e-41 172.9 98 80.6
AL6G19440 Arabidopsis lyrata HOM05D000189 ORTHO05D007859 2.2e-41 172.6 98 80.6
A02p30100 Brassica napus HOM05D000189 ORTHO05D007859 9.6e-37 157.1 87 93.1
THA.LOC104800276 Tarenaya hassleriana HOM05D000189 ORTHO05D007859 7.6e-34 147.5 98 70.4
CiPaw.04G179600 Carya illinoinensis HOM05D000189 ORTHO05D007859 1.6e-31 139.8 98 65.3
Aqoxy5G02356 Aquilegia oxysepala HOM05D000189 ORTHO05D007859 2.7e-31 139.0 98 62.2
Atru.chr4.1118 Acer truncatum HOM05D000189 ORTHO05D007859 6.0e-31 137.9 98 64.3
Lj1g0005687 Lotus japonicus HOM05D000189 ORTHO05D007859 2.3e-30 136.0 98 64.3
TAR628G1698 Trochodendron aralioides HOM05D000189 ORTHO05D007859 3.0e-30 135.6 98 62.2
QL10p039723 Quercus lobata HOM05D000189 ORTHO05D007859 3.9e-30 135.2 98 63.3
CSS0023610 Camellia sinensis var. sinensis HOM05D000189 ORTHO05D007859 8.7e-30 134.0 99 60.6
Lsat_1_v5_gn_1_80940 Lactuca sativa HOM05D000189 ORTHO05D007859 1.5e-29 133.3 98 62.2
Sc09g0002050 Simmondsia chinensis HOM05D000189 ORTHO05D007859 1.9e-29 132.9 98 63.3
AUR62000563 Chenopodium quinoa HOM05D000189 ORTHO05D007859 2.5e-29 132.5 99 58.6
AUR62006916 Chenopodium quinoa HOM05D000189 ORTHO05D007859 9.6e-29 130.6 98 58.2
TWI79G0061 Tripterygium wilfordii HOM05D000189 ORTHO05D007859 9.6e-29 130.6 98 61.2
Dinv06652 Davidia involucrata HOM05D000189 ORTHO05D007859 1.3e-28 130.2 98 60.2
MBI03_g11131_MAGBIO Magnolia biondii HOM05D000189 ORTHO05D007859 1.3e-28 130.2 101 60.4
Rhsim10G0130500 Rhododendron simsii HOM05D000189 ORTHO05D007859 1.6e-28 129.8 99 59.6
EL10Ac4g09653 Beta vulgaris HOM05D000189 ORTHO05D007859 2.1e-28 129.4 98 59.2
GSVIVG01022385001 Vitis vinifera HOM05D000189 ORTHO05D007859 2.1e-28 129.4 98 62.2
ECA248G3490 Erigeron canadensis HOM05D000552 ORTHO05D007859 3.6e-28 128.6 98 59.2
HanXRQChr01g0019121 Helianthus annuus HOM05D000189 ORTHO05D007859 4.8e-28 128.3 98 58.2
Nn5g28246 Nelumbo nucifera HOM05D000189 ORTHO05D007859 4.8e-28 128.3 98 59.2
DCAR_019974 Daucus carota HOM05D000189 ORTHO05D007859 6.2e-28 127.9 98 57.1
Psat5g058320 Pisum sativum HOM05D000189 ORTHO05D007859 8.1e-28 127.5 98 55.1
Actinidia06600 Actinidia chinensis HOM05D000189 ORTHO05D007859 1.1e-27 127.1 98 58.2
FAN28G0421 Fragaria x ananassa HOM05D000189 ORTHO05D007859 1.1e-27 127.1 100 62.0
Phvul.009G151700 Phaseolus vulgaris HOM05D000189 ORTHO05D007859 1.1e-27 127.1 98 60.2
RcHm_v2.0_Chr2g0123961 Rosa chinensis HOM05D000189 ORTHO05D007859 1.1e-27 127.1 100 63.0
ATR0709G034 Amborella trichopoda HOM05D000189 ORTHO05D007859 1.8e-27 126.3 98 62.2
Cc00_g14750 Coffea canephora HOM05D000189 ORTHO05D007859 1.8e-27 126.3 100 60.0
FvH4_1g25640 Fragaria vesca HOM05D000189 ORTHO05D007859 1.8e-27 126.3 100 62.0
FAN19G0214 Fragaria x ananassa HOM05D000189 ORTHO05D007859 1.8e-27 126.3 100 62.0
PSO210G6791 Papaver somniferum HOM05D000189 ORTHO05D007859 3.1e-27 125.6 100 58.0
COL.COLO4_12122 Corchorus olitorius HOM05D000189 ORTHO05D007859 9.0e-27 124.0 100 57.0
Hma1.2p1_0073F.1_g038450 Hydrangea macrophylla HOM05D000189 ORTHO05D007859 1.2e-26 123.6 102 56.9
Thecc.01G143200 Theobroma cacao HOM05D000189 ORTHO05D007859 1.5e-26 123.2 100 57.0
Ah.02g117830 Amaranthus hybridus HOM05D000189 ORTHO05D007859 2.0e-26 122.9 98 56.1
FAN26G1447 Fragaria x ananassa HOM05D000189 ORTHO05D007859 2.0e-26 122.9 100 61.0
Glyma.04G206900 Glycine max HOM05D000189 ORTHO05D007859 3.4e-26 122.1 98 58.2
Ca_17006_v3 Cicer arietinum L. HOM05D000189 ORTHO05D007859 4.5e-26 121.7 98 52.0
Manes.17G018825 Manihot esculenta HOM05D000189 ORTHO05D007859 7.6e-26 120.9 100 55.0
Medtr3g097060 Medicago truncatula HOM05D000189 ORTHO05D007859 7.6e-26 120.9 98 53.1
Lalb_Chr08g0237931 Lupinus albus HOM05D000189 ORTHO05D007859 9.9e-26 120.6 98 55.1
arahy.Tifrunner.gnm1.ann1.50NT7J Arachis hypogaea HOM05D000189 ORTHO05D007859 1.3e-25 120.2 98 53.1
Prupe.4G282400 Prunus persica HOM05D000189 ORTHO05D007859 1.3e-25 120.2 102 55.9
TPR.G7871 Trifolium pratense HOM05D000189 ORTHO05D007859 1.3e-25 120.2 98 53.1
arahy.Tifrunner.gnm1.ann1.682KPN Arachis hypogaea HOM05D000189 ORTHO05D007859 1.7e-25 119.8 98 53.1
ClCG04G001170 Citrullus lanatus HOM05D000189 ORTHO05D007859 1.7e-25 119.8 98 57.1
Gohir.A11G224808 Gossypium hirsutum HOM05D000189 ORTHO05D007859 1.7e-25 119.8 100 55.0
Gorai.003G068400 Gossypium raimondii HOM05D000189 ORTHO05D007859 1.7e-25 119.8 100 55.0
Aa31LG3G17850 Aethionema arabicum HOM05D000189 ORTHO05D007859 2.9e-25 119.0 191 38.2
Sabra05G0058100 Salix brachista HOM05D000189 ORTHO05D007859 4.9e-25 118.2 109 52.3
Gohir.D11G229200 Gossypium hirsutum HOM05D000189 ORTHO05D007859 6.4e-25 117.9 100 54.0
Sed0009877 Sechium edule HOM05D000189 ORTHO05D007859 1.4e-24 116.7 98 54.1
Eucgr.I00040 Eucalyptus grandis HOM05D000189 ORTHO05D007859 2.4e-24 115.9 100 54.0
Os11g0545800 Oryza sativa ssp. japonica HOM05D000189 ORTHO05D007859 2.4e-24 115.9 110 50.9
MD00G1127500 Malus domestica HOM05D000189 ORTHO05D007859 3.2e-24 115.5 102 57.8
CAN.G1464.5 Capsicum annuum HOM05D000189 ORTHO05D007859 4.2e-24 115.2 100 54.0
Migut.L00266 Erythranthe guttata HOM05D000189 ORTHO05D007859 4.2e-24 115.2 100 57.0
VMungo1309G2054 Vigna mungo HOM05D014460 ORTHO05D007859 5.5e-24 114.8 123 48.0
Migut.L00584 Erythranthe guttata HOM05D000189 ORTHO05D007859 2.1e-23 112.8 100 56.0
Zm00001eb197640 Zea mays HOM05D000189 ORTHO05D007859 7.9e-23 110.9 105 54.3
SalBow7G4190 Salvia bowleyana HOM05D000189 ORTHO05D007859 1.0e-22 110.5 101 53.5
Sopen05g034990 Solanum pennellii HOM05D000189 ORTHO05D007859 2.3e-22 109.4 100 53.0
Peaxi162Scf00925g00013 Petunia axillaris HOM05D000189 ORTHO05D007859 2.5e-21 105.9 119 46.2
SEGI_34887 Sequoiadendron giganteum HOM05D000189 ORTHO05D007859 3.3e-21 105.5 100 55.0
unitig_60.g25691 Utricularia gibba HOM05D000189 ORTHO05D007859 2.8e-20 102.4 100 50.0
Mapoly0001s0080 Marchantia polymorpha HOM05D000189 ORTHO05D007859 5.3e-19 98.2 104 48.1
SMO144G0111 Selaginella moellendorffii HOM05D000189 ORTHO05D007859 5.3e-19 98.2 98 50.0
AagrBONN_evm.TU.Sc2ySwM_344.533 Anthoceros agrestis HOM05D000189 ORTHO05D007859 2.6e-18 95.9 98 49.0
Pp3c14_25730 Physcomitrium patens HOM05D000189 ORTHO05D007859 2.6e-18 95.9 100 51.0
Haze_25388 Corylus avellana HOM05D000189 ORTHO05D007859 2.9e-17 92.4 78 59.0
PGR119G1265 Punica granatum HOM05D000189 ORTHO05D007859 1.1e-16 90.5 114 43.9
Potri.005G071000 Populus trichocarpa HOM05D000189 ORTHO05D007859 9.3e-16 87.4 72 56.9
Migut.L00875 Erythranthe guttata HOM05D000189 ORTHO05D007859 3.1e-11 72.4 59 59.3
ECA248G1047 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.2e-10 70.5 53 58.5
SGA_v2.0_scaffold244G44343 Striga asiatica HOM05D000189 ORTHO05D007859 2.0e-10 69.7 64 53.1
Mapoly0011s0008 Marchantia polymorpha HOM05D000189 ORTHO05D012441 3.4e-10 68.9 98 36.7
Pp3c5_28880 Physcomitrium patens HOM05D000189 ORTHO05D012441 4.5e-10 68.6 95 37.9
vmacro16322 Vaccinium macrocarpon HOM05D000189 ORTHO05D008437 1.0e-09 67.4 102 40.2
EL10Ac6g13140 Beta vulgaris HOM05D000189 ORTHO05D008437 1.7e-09 66.6 103 37.9
ATR0800G024 Amborella trichopoda HOM05D000189 ORTHO05D012441 2.2e-09 66.2 98 41.8
C08p22570 Brassica napus HOM05D000189 ORTHO05D008437 2.9e-09 65.9 102 38.2
Cre01.g025900 Chlamydomonas reinhardtii HOM05D000189 ORTHO05D007859 5.0e-09 65.1 95 38.9
AUR62026265 Chenopodium quinoa HOM05D000189 ORTHO05D008437 6.5e-09 64.7 103 35.9
MELO3C009002.2 Cucumis melo HOM05D000189 ORTHO05D007859 8.5e-09 64.3 54 55.6
Aa31LG7G8090 Aethionema arabicum HOM05D000189 ORTHO05D008437 3.2e-08 62.4 96 36.5
AUR62026456 Chenopodium quinoa HOM05D000189 ORTHO05D008437 3.2e-08 62.4 103 35.9
Cpa.g.sc37.52 Carica papaya HOM05D000189 ORTHO05D007859 5.5e-08 61.6 48 58.3
Phvul.002G078000 Phaseolus vulgaris HOM05D000189 ORTHO05D008437 5.5e-08 61.6 98 34.7
Gohir.A10G068120 Gossypium hirsutum HOM05D000189 ORTHO05D004078 7.2e-08 61.2 101 30.7
Phvul.002G067400 Phaseolus vulgaris HOM05D000189 ORTHO05D008437 9.3e-08 60.8 98 34.7
Gohir.D10G107800 Gossypium hirsutum HOM05D000189 ORTHO05D004078 1.2e-07 60.5 101 30.7
Gorai.011G118200 Gossypium raimondii HOM05D000189 ORTHO05D004078 1.2e-07 60.5 101 30.7
Rhsim12G0129500 Rhododendron simsii HOM05D000189 ORTHO05D008437 1.2e-07 60.5 100 37.0
SMO358G0353 Selaginella moellendorffii HOM05D000189 ORTHO05D004078 1.6e-07 60.1 95 33.7
CBR_g38446 Chara braunii HOM05D000189 ORTHO05D000474 2.1e-07 59.7 97 36.1
SMO347G0148 Selaginella moellendorffii HOM05D002600 ORTHO05D003013 2.7e-07 59.3 100 36.0
BcaC05g26347 Brassica carinata HOM05D000189 ORTHO05D008437 3.6e-07 58.9 97 37.1
BolC5t31090H Brassica oleracea HOM05D000189 ORTHO05D008437 3.6e-07 58.9 97 37.1
Thhalv10007854m.g Eutrema salsugineum HOM05D000189 ORTHO05D008437 3.6e-07 58.9 96 36.5
Hma1.2p1_0073F.1_g038460 Hydrangea macrophylla HOM05D000189 ORTHO05D007859 3.6e-07 58.9 46 56.5
PSO017G3690 Papaver somniferum HOM05D000189 ORTHO05D004078 4.6e-07 58.5 93 37.6
PSO170G6467 Papaver somniferum HOM05D000189 ORTHO05D004078 4.6e-07 58.5 93 37.6
Oeu042314.1 Olea europaea HOM05D000189 ORTHO05D007859 6.1e-07 58.2 48 54.2
Potri.015G107000 Populus trichocarpa HOM05D000189 ORTHO05D008437 6.1e-07 58.2 102 33.3
VMungo1215G1954 Vigna mungo HOM05D000189 ORTHO05D008437 7.9e-07 57.8 98 32.7
Cpa.g.sc332.5 Carica papaya HOM05D000189 ORTHO05D008543 1.0e-06 57.4 98 32.7
CBR_g766 Chara braunii HOM05D000189 ORTHO05D004078 1.3e-06 57.0 96 35.4
DCAR_031057 Daucus carota HOM05D000189 ORTHO05D008437 1.3e-06 57.0 105 34.3
PRCOL_00006075 Prasinoderma coloniale HOM05D000189 ORTHO05D049013 1.3e-06 57.0 97 38.1
Sabra15G0129600 Salix brachista HOM05D000189 ORTHO05D008437 1.3e-06 57.0 102 32.4
Peaxi162Scf00658g00515 Petunia axillaris HOM05D000189 ORTHO05D004078 1.8e-06 56.6 98 33.7
Prupe.1G267000 Prunus persica HOM05D000189 ORTHO05D008437 1.8e-06 56.6 100 37.0
SMO266G0099 Selaginella moellendorffii HOM05D000189 ORTHO05D004078 1.8e-06 56.6 98 34.7
CBR_g41650 Chara braunii HOM05D000189 ORTHO05D004078 2.3e-06 56.2 102 29.4
Migut.H01088 Erythranthe guttata HOM05D000189 ORTHO05D000474 3.0e-06 55.8 99 37.4
QL10p041044 Quercus lobata HOM05D000189 ORTHO05D004078 3.0e-06 55.8 101 29.7
Sopen05g015830 Solanum pennellii HOM05D000189 ORTHO05D004078 3.0e-06 55.8 98 33.7
ATR0559G246 Amborella trichopoda HOM05D002600 ORTHO05D003013 3.9e-06 55.5 97 35.1
CAN.G7.11 Capsicum annuum HOM05D000189 ORTHO05D004078 3.9e-06 55.5 98 33.7
FAN05G5772 Fragaria x ananassa HOM05D000189 ORTHO05D008543 3.9e-06 55.5 107 27.1
Pp3c24_9770 Physcomitrium patens HOM05D002600 ORTHO05D003013 3.9e-06 55.5 100 36.0
Aqoxy3G03347 Aquilegia oxysepala HOM05D000189 ORTHO05D000474 5.1e-06 55.1 99 32.3
Cc01_g04970 Coffea canephora HOM05D000189 ORTHO05D008543 6.7e-06 54.7 98 31.6
FvH4_6g39230 Fragaria vesca HOM05D000189 ORTHO05D008543 6.7e-06 54.7 110 27.3
SGA_v2.0_scaffold48G17991 Striga asiatica HOM05D000189 ORTHO05D000474 6.7e-06 54.7 101 37.6
RcHm_v2.0_Chr2g0153071 Rosa chinensis HOM05D000189 ORTHO05D008543 8.7e-06 54.3 110 27.3
vmacro21126 Vaccinium macrocarpon HOM05D000189 ORTHO05D000474 8.7e-06 54.3 99 34.3


User provided reference genes

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