Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p09750 Brassica napus HOM05D021353 ORTHO05D027413 4.9e-52 207.6 110 100.0
BolC8t49493H Brassica oleracea HOM05D021353 ORTHO05D027413 4.7e-47 191.0 108 93.5
C08p18670 Brassica napus HOM05D021353 ORTHO05D027413 1.8e-46 189.1 108 92.6
BcaC07g38913 Brassica carinata HOM05D021353 ORTHO05D027413 1.2e-42 176.4 97 93.8
C02p40380 Brassica napus HOM05D021353 ORTHO05D096421 7.3e-24 114.0 67 86.6
BcaC07g38914 Brassica carinata HOM05D021353 ORTHO05D000764 2.4e-22 109.0 58 91.4
BcaB07g31091 Brassica carinata HOM05D000917 ORTHO05D000764 4.3e-16 88.2 92 57.6
BcaB07g31089 Brassica carinata HOM05D000917 ORTHO05D000764 9.6e-16 87.0 59 76.3
AT1G54490 Arabidopsis thaliana HOM05D000917 ORTHO05D000764 2.1e-15 85.9 59 74.6
Thhalv10023239m.g Eutrema salsugineum HOM05D000917 ORTHO05D000764 3.6e-15 85.1 59 76.3
AL1G64900 Arabidopsis lyrata HOM05D000917 ORTHO05D000764 4.7e-15 84.7 59 72.9
BcaC04g22010 Brassica carinata HOM05D000917 ORTHO05D000764 4.7e-15 84.7 59 76.3
C09p24840 Brassica napus HOM05D000917 ORTHO05D000764 4.7e-15 84.7 59 76.3
A09p19520 Brassica napus HOM05D000917 ORTHO05D000764 6.2e-15 84.3 59 74.6
BraA09t37567Z Brassica rapa HOM05D000917 ORTHO05D000764 6.2e-15 84.3 59 74.6
BolC9t55379H Brassica oleracea HOM05D000917 ORTHO05D000764 1.4e-14 83.2 59 74.6
SpUn0001_0730 Schrenkiella parvula HOM05D000917 ORTHO05D000764 2.4e-14 82.4 59 74.6
Carub.0002s0935 Capsella rubella HOM05D000917 ORTHO05D000764 5.2e-14 81.3 59 72.9
BcaNung05777 Brassica carinata HOM05D000917 ORTHO05D000764 1.5e-13 79.7 59 72.9
Aa31LG2G12310 Aethionema arabicum HOM05D000917 ORTHO05D000764 4.4e-13 78.2 59 71.2
CARHR055590 Cardamine hirsuta HOM05D000917 ORTHO05D000764 9.9e-13 77.0 59 69.5
THA.LOC104805813 Tarenaya hassleriana HOM05D000917 ORTHO05D000764 3.2e-11 72.0 59 62.7
Sc20g0000190 Simmondsia chinensis HOM05D000917 ORTHO05D000764 5.1e-09 64.7 59 55.9
TWI36G0557 Tripterygium wilfordii HOM05D000917 ORTHO05D000764 5.1e-09 64.7 58 56.9
Actinidia05759 Actinidia chinensis HOM05D000917 ORTHO05D000764 6.6e-09 64.3 57 57.9
QL03p022655 Quercus lobata HOM05D000917 ORTHO05D000764 1.5e-08 63.2 58 56.9
CSS0011511 Camellia sinensis var. sinensis HOM05D000917 ORTHO05D000764 1.3e-07 60.1 59 54.2
CSS0041372 Camellia sinensis var. sinensis HOM05D000917 ORTHO05D000764 1.3e-07 60.1 59 54.2
CiPaw.08G178600 Carya illinoinensis HOM05D000917 ORTHO05D000764 1.3e-07 60.1 58 58.6
Dinv11574 Davidia involucrata HOM05D000917 ORTHO05D000764 1.3e-07 60.1 59 55.9
CiPaw.07G007300 Carya illinoinensis HOM05D000917 ORTHO05D000764 1.6e-07 59.7 58 58.6
AUR62000967 Chenopodium quinoa HOM05D000917 ORTHO05D000764 1.6e-07 59.7 62 56.5
Prupe.6G338500 Prunus persica HOM05D000917 ORTHO05D000764 1.6e-07 59.7 59 55.9
Hund22107 Selenicereus undatus HOM05D000917 ORTHO05D000764 1.6e-07 59.7 63 55.6
Ah.06g192670 Amaranthus hybridus HOM05D000917 ORTHO05D000764 2.1e-07 59.3 63 50.8
Potri.013G035600 Populus trichocarpa HOM05D000917 ORTHO05D000764 4.8e-07 58.2 58 51.7
Eucgr.H04389 Eucalyptus grandis HOM05D000917 ORTHO05D000764 6.2e-07 57.8 59 54.2
Potri.005G048900 Populus trichocarpa HOM05D000917 ORTHO05D000764 8.1e-07 57.4 58 55.2
EL10Ac4g09193 Beta vulgaris HOM05D000917 ORTHO05D000764 1.4e-06 56.6 63 50.8
ATR0697G262 Amborella trichopoda HOM05D000917 ORTHO05D000764 3.1e-06 55.5 58 51.7
vmacro05067 Vaccinium macrocarpon HOM05D000917 ORTHO05D000764 3.1e-06 55.5 56 51.8
MD04G1219200 Malus domestica HOM05D000917 ORTHO05D000764 4.0e-06 55.1 59 50.8
Duzib177G0650 Durio zibethinus HOM05D000917 ORTHO05D000764 5.3e-06 54.7 58 53.4
Rhsim07G0176100 Rhododendron simsii HOM05D000917 ORTHO05D000764 5.3e-06 54.7 55 50.9
Thecc.05G289800 Theobroma cacao HOM05D000917 ORTHO05D000764 5.3e-06 54.7 58 51.7
CSS0046893 Camellia sinensis var. sinensis HOM05D000917 ORTHO05D000764 6.9e-06 54.3 57 50.9
Gohir.D13G108500 Gossypium hirsutum HOM05D000917 ORTHO05D000764 9.0e-06 53.9 58 53.4
Lj9A667G46 Lonicera japonica HOM05D000917 ORTHO05D000764 9.0e-06 53.9 70 45.7


User provided reference genes

Program Settings