Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p03160 Brassica napus HOM05D006973 ORTHO05D008636 1.6e-56 222.6 117 100.0
BraA05t19306Z Brassica rapa HOM05D006973 ORTHO05D008636 1.0e-55 219.9 117 99.1
BcaC02g12446 Brassica carinata HOM05D006973 ORTHO05D008636 4.2e-54 214.5 117 96.6
BolC4t22017H Brassica oleracea HOM05D006973 ORTHO05D008636 4.2e-54 214.5 117 96.6
C04p03810 Brassica napus HOM05D006973 ORTHO05D008636 8.0e-53 210.3 117 95.7
BcaB06g29268 Brassica carinata HOM05D006973 ORTHO05D008636 9.1e-49 196.8 117 88.9
BcaB06g29270 Brassica carinata HOM05D006973 ORTHO05D008636 9.1e-49 196.8 117 88.9
BcaC02g07217 Brassica carinata HOM05D006973 ORTHO05D008636 1.2e-48 196.4 117 88.9
C04p69950 Brassica napus HOM05D006973 ORTHO05D008636 1.2e-48 196.4 117 88.9
BolC4t28495H Brassica oleracea HOM05D006973 ORTHO05D008636 1.2e-48 196.4 117 88.9
A04p32440 Brassica napus HOM05D006973 ORTHO05D008636 2.0e-48 195.7 117 88.0
BraA04t18696Z Brassica rapa HOM05D006973 ORTHO05D008636 2.0e-48 195.7 117 88.0
A03p23820 Brassica napus HOM05D006973 ORTHO05D008636 7.7e-48 193.7 117 88.9
BraA03t11597Z Brassica rapa HOM05D006973 ORTHO05D008636 7.7e-48 193.7 117 88.9
Sp4g25000 Schrenkiella parvula HOM05D006973 ORTHO05D008636 9.4e-46 186.8 117 86.3
CARHR137940 Cardamine hirsuta HOM05D006973 ORTHO05D008636 2.6e-43 178.7 118 84.7
C03p28410 Brassica napus HOM05D006973 ORTHO05D008636 4.4e-43 177.9 118 83.9
BolC3t15210H Brassica oleracea HOM05D006973 ORTHO05D008636 4.4e-43 177.9 118 83.9
BcaB01g03419 Brassica carinata HOM05D006973 ORTHO05D008636 4.1e-41 171.4 119 79.0
Thhalv10017430m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 7.0e-41 170.6 123 80.5
AL4G41480 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 1.6e-40 169.5 118 80.5
AL713U10010 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 1.6e-40 169.5 118 80.5
Carub.0004s2531 Capsella rubella HOM05D006973 ORTHO05D008636 2.7e-40 168.7 119 78.2
AT2G42870 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 1.6e-37 159.5 123 75.6
Sp5g04010 Schrenkiella parvula HOM05D006973 ORTHO05D008636 5.4e-33 144.4 119 68.9
BcaC02g10032 Brassica carinata HOM05D006973 ORTHO05D008636 2.3e-31 139.0 118 68.6
C04p33710 Brassica napus HOM05D006973 ORTHO05D008636 2.3e-31 139.0 118 68.6
BolC4t24939H Brassica oleracea HOM05D006973 ORTHO05D008636 2.3e-31 139.0 118 68.6
Aa31LG1G24640 Aethionema arabicum HOM05D006973 ORTHO05D008636 6.6e-31 137.5 125 68.0
Thhalv10006323m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 6.6e-31 137.5 119 68.1
A04p02340 Brassica napus HOM05D006973 ORTHO05D008636 1.1e-30 136.7 118 68.6
BraA04t15963Z Brassica rapa HOM05D006973 ORTHO05D008636 1.5e-30 136.3 118 68.6
BcaB02g08235 Brassica carinata HOM05D006973 ORTHO05D008636 3.3e-30 135.2 118 66.9
AL5G40650 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 1.0e-28 130.2 119 64.7
BraA09t40577Z Brassica rapa HOM05D006973 ORTHO05D008636 3.0e-28 128.6 118 63.6
CARHR169260 Cardamine hirsuta HOM05D006973 ORTHO05D008636 5.2e-28 127.9 119 62.2
A09p51360 Brassica napus HOM05D006973 ORTHO05D008636 8.9e-28 127.1 118 62.7
AT3G58850 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 1.5e-27 126.3 119 61.3
BcaC07g40229 Brassica carinata HOM05D006973 ORTHO05D008636 2.6e-27 125.6 119 63.9
Carub.0005s2563 Capsella rubella HOM05D006973 ORTHO05D008636 4.4e-27 124.8 121 60.3
BcaC07g40299 Brassica carinata HOM05D006973 ORTHO05D008636 6.0e-24 114.4 107 63.6
C08p34140 Brassica napus HOM05D006973 ORTHO05D008636 6.0e-24 114.4 107 63.6
BolC8t51013H Brassica oleracea HOM05D006973 ORTHO05D008636 6.0e-24 114.4 107 63.6
Prupe.3G172700 Prunus persica HOM05D006973 ORTHO05D008636 6.4e-18 94.4 89 58.4
Nitab4.5_0001675g0100 Nicotiana tabacum HOM05D006973 ORTHO05D008636 1.4e-17 93.2 69 66.7
Duzib147G0021 Durio zibethinus HOM05D006973 ORTHO05D008636 4.1e-17 91.7 64 70.3
Cfa021245 Carpinus fangiana HOM05D006973 ORTHO05D008636 5.4e-17 91.3 76 59.2
Manes.02G084300 Manihot esculenta HOM05D006973 ORTHO05D008636 9.2e-17 90.5 91 53.8
Duzib187G1733 Durio zibethinus HOM05D006973 ORTHO05D008636 1.6e-16 89.7 101 52.5
Glyma.02G286900 Glycine max HOM05D006973 ORTHO05D008636 2.1e-16 89.4 91 52.7
Potri.005G201500 Populus trichocarpa HOM05D006973 ORTHO05D008636 2.1e-16 89.4 80 57.5
Nitab4.5_0003934g0010 Nicotiana tabacum HOM05D006973 ORTHO05D008636 2.7e-16 89.0 62 69.4
Sabra02G0048600 Salix brachista HOM05D006973 ORTHO05D008636 4.6e-16 88.2 98 49.0
FvH4_6g38230 Fragaria vesca HOM05D006973 ORTHO05D008636 6.0e-16 87.8 66 65.2
FAN02G1229 Fragaria x ananassa HOM05D006973 ORTHO05D008636 6.0e-16 87.8 66 65.2
FAN14G5571 Fragaria x ananassa HOM05D006973 ORTHO05D008636 6.0e-16 87.8 66 65.2
RcHm_v2.0_Chr2g0151491 Rosa chinensis HOM05D006973 ORTHO05D008636 6.0e-16 87.8 72 62.5
Aa31LG10G13410 Aethionema arabicum HOM05D006973 ORTHO05D008636 7.8e-16 87.4 124 50.8
Thecc.01G161800 Theobroma cacao HOM05D006973 ORTHO05D008636 7.8e-16 87.4 129 45.0
VMungo0647G1950 Vigna mungo HOM05D006973 ORTHO05D008636 1.0e-15 87.0 70 57.1
FAN05G1052 Fragaria x ananassa HOM05D006973 ORTHO05D008636 1.3e-15 86.7 66 63.6
FAN09G4519 Fragaria x ananassa HOM05D006973 ORTHO05D008636 1.3e-15 86.7 66 63.6
QL08p044096 Quercus lobata HOM05D006973 ORTHO05D008636 1.3e-15 86.7 67 61.2
Phvul.008G191400 Phaseolus vulgaris HOM05D006973 ORTHO05D008636 1.7e-15 86.3 65 60.0
CAN.G585.39 Capsicum annuum HOM05D006973 ORTHO05D008636 3.0e-15 85.5 62 66.1
Haze_13497 Corylus avellana HOM05D006973 ORTHO05D008636 3.9e-15 85.1 65 58.5
Nn6g34359 Nelumbo nucifera HOM05D006973 ORTHO05D008636 5.1e-15 84.7 90 50.0
Peaxi162Scf00111g00009 Petunia axillaris HOM05D006973 ORTHO05D008636 5.1e-15 84.7 93 49.5
Gohir.A11G060500 Gossypium hirsutum HOM05D006973 ORTHO05D008636 6.6e-15 84.3 62 67.7
PGSC0003DMG400017344 Solanum tuberosum HOM05D006973 ORTHO05D008636 6.6e-15 84.3 61 67.2
Glyma.14G028000 Glycine max HOM05D006973 ORTHO05D008636 8.6e-15 84.0 63 60.3
Dinv21566 Davidia involucrata HOM05D006973 ORTHO05D008636 1.1e-14 83.6 86 47.7
Potri.002G060100 Populus trichocarpa HOM05D006973 ORTHO05D008636 1.5e-14 83.2 88 50.0
Ciclev10033026m.g Citrus clementina HOM05D006973 ORTHO05D008636 1.9e-14 82.8 64 64.1
Solyc07g056360.1 Solanum lycopersicum HOM05D006973 ORTHO05D008636 1.9e-14 82.8 61 65.6
Sopen07g029740 Solanum pennellii HOM05D006973 ORTHO05D008636 1.9e-14 82.8 61 65.6
Gohir.D11G064600 Gossypium hirsutum HOM05D006973 ORTHO05D008636 2.5e-14 82.4 62 66.1
Gorai.007G069800 Gossypium raimondii HOM05D006973 ORTHO05D008636 2.5e-14 82.4 62 66.1
Nn3g20922 Nelumbo nucifera HOM05D006973 ORTHO05D008636 3.3e-14 82.0 80 50.0
Lalb_Chr17g0348291 Lupinus albus HOM05D006973 ORTHO05D008636 4.3e-14 81.6 68 57.4
CANSAT64G0305 Cannabis sativa HOM05D006973 ORTHO05D008636 5.6e-14 81.3 61 63.9
LjContig00310g0018130 Lotus japonicus HOM05D006973 ORTHO05D008636 5.6e-14 81.3 127 39.4
Medtr5g091690 Medicago truncatula HOM05D006973 ORTHO05D008636 7.3e-14 80.9 66 57.6
Atru.chr6.2093 Acer truncatum HOM05D006973 ORTHO05D008636 6.2e-13 77.8 61 60.7
ClCG09G022400 Citrullus lanatus HOM05D006973 ORTHO05D008636 6.2e-13 77.8 115 40.0
Rhsim06G0116300 Rhododendron simsii HOM05D006973 ORTHO05D008636 6.2e-13 77.8 77 46.8
TPR.G12665 Trifolium pratense HOM05D006973 ORTHO05D008636 6.2e-13 77.8 63 57.1
CsaV3_6G038070 Cucumis sativus L. HOM05D006973 ORTHO05D008636 1.4e-12 76.6 94 43.6
Actinidia32515 Actinidia chinensis HOM05D006973 ORTHO05D008636 4.0e-12 75.1 89 48.3
MELO3C014471.2 Cucumis melo HOM05D006973 ORTHO05D008636 5.2e-12 74.7 69 53.6
DCAR_013315 Daucus carota HOM05D006973 ORTHO05D008636 5.2e-12 74.7 114 46.5
PGR042G1786 Punica granatum HOM05D006973 ORTHO05D008636 5.2e-12 74.7 58 60.3
Oeu040038.1 Olea europaea HOM05D006973 ORTHO05D008636 8.9e-12 73.9 70 52.9
Lalb_Chr04g0248771 Lupinus albus HOM05D006973 ORTHO05D008636 1.2e-11 73.6 61 55.7
Aqoxy4G00147 Aquilegia oxysepala HOM05D006973 ORTHO05D008636 1.5e-11 73.2 70 50.0
TAR629G2498 Trochodendron aralioides HOM05D006973 ORTHO05D008636 1.5e-11 73.2 69 52.2
Cc05_g09430 Coffea canephora HOM05D006973 ORTHO05D008636 2.6e-11 72.4 54 63.0
Lalb_Chr10g0106711 Lupinus albus HOM05D006973 ORTHO05D008636 9.9e-11 70.5 62 50.0
MBI07_g21782_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 3.7e-10 68.6 72 51.4
MBI07_g41313_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 3.7e-10 68.6 72 51.4
THA.LOC104803237 Tarenaya hassleriana HOM05D006973 ORTHO05D008636 3.7e-10 68.6 59 55.9
Oeu020059.1 Olea europaea HOM05D006973 ORTHO05D008636 1.9e-09 66.2 94 44.7
arahy.Tifrunner.gnm1.ann1.9T2B0R Arachis hypogaea HOM05D006973 ORTHO05D008636 2.4e-09 65.9 58 51.7
MSTRG.14293 Avicennia marina HOM05D006973 ORTHO05D008636 3.2e-09 65.5 110 39.1
Sed0009997 Sechium edule HOM05D006973 ORTHO05D008636 3.2e-09 65.5 111 38.7
arahy.Tifrunner.gnm1.ann1.D7Q1BT Arachis hypogaea HOM05D006973 ORTHO05D008636 5.4e-09 64.7 53 54.7
arahy.Tifrunner.gnm1.ann1.SG1KTY Arachis hypogaea HOM05D006973 ORTHO05D008636 5.4e-09 64.7 53 54.7
CSS0041461 Camellia sinensis var. sinensis HOM05D006973 ORTHO05D008636 3.5e-08 62.0 66 45.5
CDE04G0049 Ceratophyllum demersum HOM05D006973 ORTHO05D008636 1.5e-06 56.6 68 42.6


User provided reference genes

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