Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 3.1e-216 755.0 412 100.0
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 1.7e-203 712.6 391 98.7
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 3.4e-191 671.8 416 90.1
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 1.7e-187 659.4 391 92.6
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 7.1e-181 637.5 384 92.4
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 2.3e-171 605.9 382 85.6
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 8.2e-169 597.4 383 86.4
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 5.1e-163 578.2 403 82.4
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 8.2e-161 570.9 383 84.9
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 1.8e-160 569.7 383 84.3
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 3.1e-160 568.9 395 83.5
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 9.0e-160 567.4 379 84.7
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 1.0e-150 537.3 383 79.6
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 5.7e-146 521.5 386 73.6
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 4.8e-137 491.9 379 73.6
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 1.0e-134 484.2 436 64.7
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 6.3e-129 464.9 387 69.3
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 2.0e-114 416.8 381 64.3
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 7.5e-114 414.8 394 62.9
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 5.6e-101 372.1 386 56.0
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 4.0e-99 365.9 385 55.3
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 6.8e-99 365.2 387 58.9
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 3.4e-98 362.8 378 55.6
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 5.8e-98 362.1 379 54.9
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 1.1e-96 357.8 379 55.7
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 1.4e-96 357.5 381 55.4
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 1.4e-96 357.5 391 55.0
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 2.4e-96 356.7 383 53.3
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 1.2e-95 354.4 384 53.6
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 1.6e-95 354.0 383 57.4
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 2.1e-95 353.6 376 54.0
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 3.5e-95 352.8 382 55.2
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 1.3e-94 350.9 385 54.0
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 1.3e-94 350.9 390 52.6
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 3.0e-94 349.7 383 52.7
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 6.6e-94 348.6 381 53.8
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 6.6e-94 348.6 386 52.6
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 8.6e-94 348.2 386 53.4
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 1.5e-93 347.4 383 54.6
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 1.9e-93 347.1 387 53.2
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 1.9e-93 347.1 384 51.8
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 1.9e-93 347.1 387 53.7
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 2.5e-93 346.7 379 52.2
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 4.3e-93 345.9 380 54.5
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 4.3e-93 345.9 380 54.5
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 5.6e-93 345.5 374 52.7
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 5.6e-93 345.5 399 51.4
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 7.3e-93 345.1 383 53.5
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 9.5e-93 344.7 382 52.9
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 1.2e-92 344.4 402 50.5
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 1.2e-92 344.4 381 54.6
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 1.6e-92 344.0 402 52.0
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 1.6e-92 344.0 378 53.4
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 2.8e-92 343.2 382 54.5
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 2.8e-92 343.2 382 54.5
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 3.6e-92 342.8 382 53.9
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 6.2e-92 342.0 385 54.5
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 6.2e-92 342.0 386 53.4
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 1.1e-91 341.3 374 54.0
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.1e-91 341.3 390 53.6
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 4.0e-91 339.3 382 54.5
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 4.0e-91 339.3 379 53.6
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 8.9e-91 338.2 393 50.9
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 8.9e-91 338.2 386 53.6
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 8.9e-91 338.2 383 52.0
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 8.9e-91 338.2 379 53.3
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 2.6e-90 336.7 385 51.9
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 2.6e-90 336.7 378 52.6
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 3.4e-90 336.3 402 52.2
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 4.4e-90 335.9 382 50.8
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 5.8e-90 335.5 387 51.2
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 5.8e-90 335.5 379 53.6
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 9.9e-90 334.7 402 52.5
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 9.9e-90 334.7 374 53.5
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 1.3e-89 334.3 393 50.6
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 1.7e-89 334.0 380 49.7
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 1.7e-89 334.0 401 51.4
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 3.7e-89 332.8 388 51.5
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 4.9e-89 332.4 380 51.1
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 2.4e-88 330.1 371 51.8
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 2.4e-88 330.1 380 50.8
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 5.4e-88 328.9 380 51.8
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 5.4e-88 328.9 380 51.8
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 1.6e-87 327.4 393 49.1
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 6.0e-87 325.5 393 48.9
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 1.3e-86 324.3 386 51.0
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 2.3e-86 323.6 380 51.6
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 3.9e-86 322.8 443 45.8
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 1.1e-85 321.2 390 49.2
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 2.5e-85 320.1 380 50.8
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 7.3e-85 318.5 427 48.7
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 8.1e-84 315.1 387 51.4
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 2.4e-83 313.5 379 51.2
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 6.8e-83 312.0 380 53.4
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 8.9e-83 311.6 363 52.9
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 1.2e-82 311.2 406 47.8
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 1.2e-82 311.2 378 48.1
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 2.0e-82 310.5 381 49.6
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 4.4e-82 309.3 375 50.9
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 2.9e-81 306.6 375 50.7
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 2.4e-80 303.5 389 51.9
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 2.7e-79 300.1 388 48.2
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 1.7e-78 297.4 387 51.7
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 2.3e-78 297.0 386 49.7
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 4.3e-77 292.7 409 45.7
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 3.6e-76 289.7 373 49.3
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 9.0e-75 285.0 378 48.4
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 1.4e-72 277.7 362 45.0
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.6e-71 274.2 364 47.0
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 7.9e-71 271.9 387 43.4
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 8.7e-70 268.5 382 44.5
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.1e-69 268.1 382 44.5
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 4.3e-69 266.2 377 46.2
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 2.7e-63 246.9 382 43.7
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 2.4e-59 233.8 396 38.9
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 3.2e-56 223.4 247 52.6
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 1.0e-54 218.4 244 52.9
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 9.6e-53 211.8 327 45.0
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 6.3e-52 209.1 447 34.9
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 1.0e-49 201.8 323 44.0
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 3.7e-44 183.3 366 36.3
SHI18675 Sapria himalayana HOM05D002744 ORTHO05D006546 2.9e-41 173.7 301 43.9
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 8.5e-41 172.2 202 48.0
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 7.9e-31 139.0 380 30.3
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 1.4e-30 138.3 163 52.8
CAN.G39.16 Capsicum annuum HOM05D002744 ORTHO05D006546 1.3e-25 121.7 124 54.8
Oeu017758.1 Olea europaea HOM05D002744 ORTHO05D006546 3.2e-24 117.1 119 52.1
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 1.4e-22 111.7 210 37.6
Atru.chr12.137 Acer truncatum HOM05D002744 ORTHO05D006546 5.5e-16 89.7 56 78.6
MCO01G055 Micromonas commoda HOM05D002744 ORTHO05D006546 9.4e-16 89.0 437 25.6
PRCOL_00000452 Prasinoderma coloniale HOM05D002744 ORTHO05D006546 8.0e-15 85.9 428 25.7
HanXRQChr04g0102991 Helianthus annuus HOM05D002744 ORTHO05D006546 1.4e-14 85.1 67 61.2
AUR62042571 Chenopodium quinoa HOM05D002744 ORTHO05D006546 2.3e-14 84.3 101 51.5
SHI18673 Sapria himalayana HOM05D002744 ORTHO05D006546 7.5e-13 79.3 55 70.9
Lsat_1_v5_gn_5_82241 Lactuca sativa HOM05D002744 ORTHO05D006546 1.8e-11 74.7 51 70.6
Cre07.g348250 Chlamydomonas reinhardtii HOM05D002744 ORTHO05D006546 4.5e-10 70.1 516 23.4
Aqoxy466s002 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 7.2e-08 62.8 116 41.4


User provided reference genes

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