Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p33800 Brassica napus HOM05D013914 ORTHO05D014484 8.6e-57 223.4 111 100.0
A06p42980 Brassica napus HOM05D013914 ORTHO05D014484 8.6e-57 223.4 111 100.0
A09p04740 Brassica napus HOM05D013914 ORTHO05D014484 8.6e-57 223.4 111 100.0
BraA03t13299Z Brassica rapa HOM05D013914 ORTHO05D014484 8.6e-57 223.4 111 100.0
BolC7t45113H Brassica oleracea HOM05D013914 ORTHO05D014484 5.4e-35 151.0 87 88.5
BcaC09g51967 Brassica carinata HOM05D000049 ORTHO05D014484 2.8e-31 138.7 92 80.4
A03p60730 Brassica napus HOM05D013914 ORTHO05D014484 1.4e-30 136.3 66 100.0
C04p00550 Brassica napus HOM05D013914 ORTHO05D014484 1.2e-29 133.3 64 100.0
BcaC06g33322 Brassica carinata HOM05D013914 ORTHO05D014484 3.2e-27 125.2 63 100.0
BcaC08g46059 Brassica carinata HOM05D013914 ORTHO05D014484 8.7e-25 117.1 60 98.3
BraA09t36255Z Brassica rapa HOM05D013914 ORTHO05D014484 2.4e-22 109.0 73 82.2
A03p20940 Brassica napus HOM05D013914 ORTHO05D014484 2.0e-21 105.9 79 73.4
C07p45930 Brassica napus HOM05D000049 ORTHO05D014484 2.2e-20 102.4 55 92.7
C02p45360 Brassica napus HOM05D000049 ORTHO05D000027 5.5e-19 97.8 53 92.5
C02p45350 Brassica napus HOM05D000049 ORTHO05D014484 7.1e-19 97.4 71 74.6
BcaB01g00050 Brassica carinata HOM05D000144 ORTHO05D002986 2.3e-17 92.4 47 95.7
A09p48880 Brassica napus HOM05D000144 ORTHO05D002986 2.3e-17 92.4 47 95.7
C08p31230 Brassica napus HOM05D000144 ORTHO05D002986 2.3e-17 92.4 47 95.7
C04p52280 Brassica napus HOM05D000049 ORTHO05D000027 5.1e-17 91.3 49 91.8
BcaC07g39910 Brassica carinata HOM05D000144 ORTHO05D002986 8.7e-17 90.5 47 93.6
BolC8t50745H Brassica oleracea HOM05D000144 ORTHO05D002986 8.7e-17 90.5 47 93.6
BraA09t40343Z Brassica rapa HOM05D000144 ORTHO05D002986 9.7e-16 87.0 50 90.0
Sp5g06600 Schrenkiella parvula HOM05D000144 ORTHO05D002986 1.3e-15 86.7 47 87.2
Thhalv10010699m.g Eutrema salsugineum HOM05D000144 ORTHO05D002986 1.6e-15 86.3 47 87.2
AL5G37200 Arabidopsis lyrata HOM05D000144 ORTHO05D002986 3.1e-14 82.0 51 82.4
AT3G55920 Arabidopsis thaliana HOM05D000144 ORTHO05D002986 3.1e-14 82.0 51 82.4
Carub.0005s2267 Capsella rubella HOM05D000144 ORTHO05D002986 6.9e-14 80.9 51 80.4
Aa31LG10G10860 Aethionema arabicum HOM05D000144 ORTHO05D002986 6.5e-12 74.3 52 73.1
THA.LOC104810098 Tarenaya hassleriana HOM05D000144 ORTHO05D002986 4.2e-11 71.6 51 70.6
BcaB04g17480 Brassica carinata HOM05D003501 ORTHO05D004388 3.6e-10 68.6 53 71.7
BcaC07g37193 Brassica carinata HOM05D003501 ORTHO05D004388 3.6e-10 68.6 53 71.7
BcaC08g42972 Brassica carinata HOM05D003501 ORTHO05D004388 3.6e-10 68.6 53 71.7
A10p06220 Brassica napus HOM05D003501 ORTHO05D004388 3.6e-10 68.6 53 71.7
C06p02140 Brassica napus HOM05D003501 ORTHO05D004388 3.6e-10 68.6 53 71.7
C08p05880 Brassica napus HOM05D003501 ORTHO05D004388 3.6e-10 68.6 53 71.7
BolC8t47419H Brassica oleracea HOM05D003501 ORTHO05D004388 3.6e-10 68.6 53 71.7
BraA08t32548Z Brassica rapa HOM05D003501 ORTHO05D004388 3.6e-10 68.6 53 71.7
BraA10t42890Z Brassica rapa HOM05D003501 ORTHO05D004388 3.6e-10 68.6 53 71.7
BcaB07g33815 Brassica carinata HOM05D003501 ORTHO05D004388 7.9e-10 67.4 53 69.8
BolC6t35344H Brassica oleracea HOM05D003501 ORTHO05D004388 7.9e-10 67.4 53 69.8
arahy.Tifrunner.gnm1.ann1.57UCU4 Arachis hypogaea HOM05D003501 ORTHO05D004388 1.4e-09 66.6 63 63.5
arahy.Tifrunner.gnm1.ann1.FG3FW1 Arachis hypogaea HOM05D003501 ORTHO05D004388 1.4e-09 66.6 63 63.5
Thhalv10013826m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 3.0e-09 65.5 55 67.3
Glyma.13G179100 Glycine max HOM05D003501 ORTHO05D004388 6.7e-09 64.3 52 65.4
Aa31LG2G15030 Aethionema arabicum HOM05D003501 ORTHO05D004388 8.8e-09 63.9 53 67.9
A08p05420 Brassica napus HOM05D003501 ORTHO05D004388 8.8e-09 63.9 53 67.9
Psat7g031640 Pisum sativum HOM05D003501 ORTHO05D004388 8.8e-09 63.9 52 67.3
THA.LOC104809596 Tarenaya hassleriana HOM05D003501 ORTHO05D004388 1.1e-08 63.5 53 66.0
VMungo0251G0431 Vigna mungo HOM05D003501 ORTHO05D004388 2.5e-08 62.4 51 64.7
VMungo0720G0165 Vigna mungo HOM05D003501 ORTHO05D004388 2.5e-08 62.4 51 64.7
Phvul.002G221600 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 3.3e-08 62.0 52 63.5
TPR.G12888 Trifolium pratense HOM05D003501 ORTHO05D004388 3.3e-08 62.0 62 56.5
Lalb_Chr09g0327341 Lupinus albus HOM05D003501 ORTHO05D004388 4.3e-08 61.6 52 63.5
Lj2g0023176 Lotus japonicus HOM05D003501 ORTHO05D004388 5.7e-08 61.2 90 43.3
Medtr8g098715 Medicago truncatula HOM05D003501 ORTHO05D004388 5.7e-08 61.2 53 62.3
Lj2g0019396 Lotus japonicus HOM05D003501 ORTHO05D004388 7.4e-08 60.8 52 63.5
Sp6g23090 Schrenkiella parvula HOM05D003501 ORTHO05D004388 7.4e-08 60.8 53 60.4
TWI79G0225 Tripterygium wilfordii HOM05D003501 ORTHO05D004388 1.3e-07 60.1 53 60.4
CiPaw.14G095200 Carya illinoinensis HOM05D003501 ORTHO05D004388 2.2e-07 59.3 53 56.6
Potri.001G216400 Populus trichocarpa HOM05D003501 ORTHO05D004388 3.7e-07 58.5 53 58.5
Haze_23560 Corylus avellana HOM05D003501 ORTHO05D004388 8.2e-07 57.4 53 54.7
arahy.Tifrunner.gnm1.ann1.3N5Q80 Arachis hypogaea HOM05D003501 ORTHO05D004388 1.1e-06 57.0 63 55.6
CiPaw.08G137600 Carya illinoinensis HOM05D003501 ORTHO05D004388 1.1e-06 57.0 53 56.6
Ca_12888_v3 Cicer arietinum L. HOM05D003501 ORTHO05D004388 1.1e-06 57.0 62 51.6
Nn8g40776 Nelumbo nucifera HOM05D003501 ORTHO05D004388 1.1e-06 57.0 53 54.7
Sabra16G0127400 Salix brachista HOM05D003501 ORTHO05D004388 1.1e-06 57.0 53 56.6
Sc10g0003820 Simmondsia chinensis HOM05D003501 ORTHO05D004388 1.1e-06 57.0 53 60.4
TAR481G0007 Trochodendron aralioides HOM05D003501 ORTHO05D004388 1.1e-06 57.0 53 54.7
Carub.0006s1974 Capsella rubella HOM05D003501 ORTHO05D004388 1.4e-06 56.6 53 60.4
ECA232G0193 Erigeron canadensis HOM05D003501 ORTHO05D004388 1.4e-06 56.6 52 59.6
HanXRQChr11g0321781 Helianthus annuus HOM05D003501 ORTHO05D004388 1.4e-06 56.6 52 59.6
MBI14_g02806_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 1.8e-06 56.2 55 56.4
MBI14_g41488_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 1.8e-06 56.2 55 56.4
SalBow1G3035 Salvia bowleyana HOM05D003501 ORTHO05D004388 1.8e-06 56.2 53 60.4
Gohir.A09G099800 Gossypium hirsutum HOM05D003501 ORTHO05D004388 2.4e-06 55.8 53 52.8
Gohir.D09G099200 Gossypium hirsutum HOM05D003501 ORTHO05D004388 2.4e-06 55.8 53 52.8
Gorai.006G116200 Gossypium raimondii HOM05D003501 ORTHO05D004388 2.4e-06 55.8 53 52.8
Thecc.09G271900 Theobroma cacao HOM05D003501 ORTHO05D004388 2.4e-06 55.8 53 54.7
Cpa.g.sc56.89 Carica papaya HOM05D003501 ORTHO05D004388 3.1e-06 55.5 52 59.6
Cfa010173 Carpinus fangiana HOM05D003501 ORTHO05D004388 3.1e-06 55.5 53 52.8
Lsat_1_v5_gn_4_134160 Lactuca sativa HOM05D003501 ORTHO05D004388 4.1e-06 55.1 52 55.8
AT5G22100 Arabidopsis thaliana HOM05D003501 ORTHO05D004388 5.3e-06 54.7 53 58.5
CSS0017931 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 5.3e-06 54.7 53 52.8
MSTRG.12186 Avicennia marina HOM05D003501 ORTHO05D004388 6.9e-06 54.3 53 56.6
CDE01G0277 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 6.9e-06 54.3 52 53.8
SGA_v2.0_scaffold135G34778 Striga asiatica HOM05D003501 ORTHO05D004388 6.9e-06 54.3 58 51.7
Atru.chr3.3108 Acer truncatum HOM05D003501 ORTHO05D004388 9.1e-06 53.9 53 52.8
Ciclev10028663m.g Citrus clementina HOM05D003501 ORTHO05D004388 9.1e-06 53.9 53 52.8
Eucgr.B03813 Eucalyptus grandis HOM05D003501 ORTHO05D004388 9.1e-06 53.9 53 56.6
Potri.009G016000 Populus trichocarpa HOM05D003501 ORTHO05D004388 9.1e-06 53.9 53 56.6


User provided reference genes

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