Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p31080 Brassica napus HOM05D005421 ORTHO05D007601 2.3e-116 422.9 344 100.0
BcaC02g07328 Brassica carinata HOM05D005421 ORTHO05D007601 1.0e-111 407.5 344 94.2
C04p68470 Brassica napus HOM05D005421 ORTHO05D007601 1.2e-109 400.6 351 93.4
BcaC01g05387 Brassica carinata HOM05D005421 ORTHO05D007601 8.8e-108 394.4 349 90.8
C03p27110 Brassica napus HOM05D005421 ORTHO05D007601 3.3e-107 392.5 351 90.0
BolC3t15092H Brassica oleracea HOM05D005421 ORTHO05D007601 3.3e-107 392.5 351 90.0
BcaB01g03524 Brassica carinata HOM05D005421 ORTHO05D007601 7.4e-107 391.3 353 90.1
BraA03t11510Z Brassica rapa HOM05D005421 ORTHO05D007601 3.4e-104 382.5 353 92.4
BraA04t18563Z Brassica rapa HOM05D005421 ORTHO05D007601 4.5e-104 382.1 211 90.0
AL4G38520 Arabidopsis lyrata HOM05D005421 ORTHO05D007601 1.1e-102 377.5 354 91.5
CARHR135760 Cardamine hirsuta HOM05D005421 ORTHO05D007601 3.2e-102 375.9 353 91.2
Sp4g22980 Schrenkiella parvula HOM05D005421 ORTHO05D007601 1.2e-101 374.0 190 94.2
A03p22860 Brassica napus HOM05D005421 ORTHO05D007601 3.6e-101 372.5 374 87.2
BolC4t28347H Brassica oleracea HOM05D005421 ORTHO05D007601 6.1e-101 371.7 416 74.8
Carub.0004s2294 Capsella rubella HOM05D005421 ORTHO05D007601 7.9e-101 371.3 190 93.2
AT2G40650 Arabidopsis thaliana HOM05D005421 ORTHO05D007601 1.0e-100 370.9 190 92.6
Aa31LG3G1470 Aethionema arabicum HOM05D005421 ORTHO05D007601 2.3e-100 369.8 217 85.3
BcaB06g29166 Brassica carinata HOM05D005421 ORTHO05D007601 3.0e-100 369.4 344 89.2
THA.LOC104820733 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 1.3e-95 354.0 190 87.4
RcHm_v2.0_Chr3g0456541 Rosa chinensis HOM05D005421 ORTHO05D007601 2.9e-95 352.8 190 86.3
FvH4_6g07010 Fragaria vesca HOM05D005421 ORTHO05D007601 6.5e-95 351.7 190 85.8
FAN05G0688 Fragaria x ananassa HOM05D005421 ORTHO05D007601 6.5e-95 351.7 190 85.8
Sabra13G0010600 Salix brachista HOM05D005421 ORTHO05D007601 1.1e-94 350.9 190 86.3
THA.LOC104805907 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 1.1e-94 350.9 217 82.9
FAN14G1909 Fragaria x ananassa HOM05D005421 ORTHO05D007601 1.5e-94 350.5 190 85.3
CANSAT54G2596 Cannabis sativa HOM05D005421 ORTHO05D007601 2.5e-94 349.7 190 86.3
Manes.13G000084 Manihot esculenta HOM05D005421 ORTHO05D007601 3.2e-94 349.4 190 85.8
TWI12G1149 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 5.5e-94 348.6 190 84.2
Potri.013G012000 Populus trichocarpa HOM05D005421 ORTHO05D007601 7.2e-94 348.2 190 85.3
Cfa006671 Carpinus fangiana HOM05D005421 ORTHO05D007601 2.1e-93 346.7 190 85.3
Ciclev10001489m.g Citrus clementina HOM05D005421 ORTHO05D007601 2.1e-93 346.7 190 85.8
Haze_04100 Corylus avellana HOM05D005421 ORTHO05D007601 2.1e-93 346.7 190 85.3
Lalb_Chr02g0148011 Lupinus albus HOM05D005421 ORTHO05D007601 2.7e-93 346.3 190 84.2
Thecc.06G040900 Theobroma cacao HOM05D005421 ORTHO05D007601 2.7e-93 346.3 190 84.7
CiPaw.07G025400 Carya illinoinensis HOM05D005421 ORTHO05D007601 3.6e-93 345.9 190 84.7
QL03p018920 Quercus lobata HOM05D005421 ORTHO05D007601 4.7e-93 345.5 190 84.7
HanXRQChr01g0011821 Helianthus annuus HOM05D005421 ORTHO05D007601 1.4e-92 344.0 190 84.7
Medtr1g083720 Medicago truncatula HOM05D005421 ORTHO05D007601 1.4e-92 344.0 190 83.7
PSO170G1114 Papaver somniferum HOM05D005421 ORTHO05D007601 1.4e-92 344.0 190 84.2
PSO407G0035 Papaver somniferum HOM05D005421 ORTHO05D007601 1.4e-92 344.0 190 84.2
Eucgr.H03270 Eucalyptus grandis HOM05D005421 ORTHO05D007601 1.8e-92 343.6 189 85.7
Glyma.10G149900 Glycine max HOM05D005421 ORTHO05D007601 1.8e-92 343.6 190 83.2
Psat6g151720 Pisum sativum HOM05D005421 ORTHO05D007601 1.8e-92 343.6 190 84.2
Prupe.1G236900 Prunus persica HOM05D005421 ORTHO05D007601 1.8e-92 343.6 190 84.2
TAR636G1951 Trochodendron aralioides HOM05D005421 ORTHO05D007601 2.3e-92 343.2 189 84.1
Glyma.20G238500 Glycine max HOM05D005421 ORTHO05D007601 3.0e-92 342.8 190 83.2
MD12G1209800 Malus domestica HOM05D005421 ORTHO05D007601 3.0e-92 342.8 190 84.2
Peaxi162Scf00037g01816 Petunia axillaris HOM05D005421 ORTHO05D007601 4.0e-92 342.4 190 83.2
Atru.chr2.115 Acer truncatum HOM05D005421 ORTHO05D007601 5.2e-92 342.0 190 83.2
Aqoxy2G02863 Aquilegia oxysepala HOM05D005421 ORTHO05D007601 5.2e-92 342.0 190 84.2
CSS0007056 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 5.2e-92 342.0 190 84.2
CSS0046729 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 5.2e-92 342.0 190 84.2
CAN.G1273.26 Capsicum annuum HOM05D005421 ORTHO05D007601 5.2e-92 342.0 190 83.7
MELO3C004206.2 Cucumis melo HOM05D005421 ORTHO05D007601 5.2e-92 342.0 190 83.7
ECA236G4663 Erigeron canadensis HOM05D005421 ORTHO05D007601 5.2e-92 342.0 190 84.2
Gohir.A10G155100 Gossypium hirsutum HOM05D005421 ORTHO05D007601 5.2e-92 342.0 190 84.2
Gohir.D10G110800 Gossypium hirsutum HOM05D005421 ORTHO05D007601 5.2e-92 342.0 190 84.2
Gorai.011G122100 Gossypium raimondii HOM05D005421 ORTHO05D007601 5.2e-92 342.0 190 84.2
CsaV3_2G006840 Cucumis sativus L. HOM05D005421 ORTHO05D007601 6.7e-92 341.7 190 83.7
Lj5g0011296 Lotus japonicus HOM05D005421 ORTHO05D007601 6.7e-92 341.7 189 83.1
FAN02G3486 Fragaria x ananassa HOM05D005421 ORTHO05D007601 8.8e-92 341.3 204 80.4
Ca_10154_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 1.1e-91 340.9 189 83.6
Ca_29832_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 1.1e-91 340.9 189 83.6
Sed0018701 Sechium edule HOM05D005421 ORTHO05D007601 1.1e-91 340.9 190 84.2
PGSC0003DMG400024728 Solanum tuberosum HOM05D005421 ORTHO05D007601 1.1e-91 340.9 190 82.6
ClCG02G015170 Citrullus lanatus HOM05D005421 ORTHO05D007601 1.5e-91 340.5 190 83.7
MD04G1196900 Malus domestica HOM05D005421 ORTHO05D007601 1.5e-91 340.5 190 83.7
Nitab4.5_0001971g0070 Nicotiana tabacum HOM05D005421 ORTHO05D007601 1.5e-91 340.5 190 82.1
Nitab4.5_0002612g0040 Nicotiana tabacum HOM05D005421 ORTHO05D007601 1.5e-91 340.5 190 82.1
Ah.04g161240 Amaranthus hybridus HOM05D005421 ORTHO05D007601 2.6e-91 339.7 190 83.7
Cpa.g.sc48.125 Carica papaya HOM05D005421 ORTHO05D007601 2.6e-91 339.7 217 78.3
Lsat_1_v5_gn_7_73220 Lactuca sativa HOM05D005421 ORTHO05D007601 2.6e-91 339.7 190 82.6
Lalb_Chr21g0310441 Lupinus albus HOM05D005421 ORTHO05D007601 4.4e-91 339.0 188 82.4
SGA_v2.0_scaffold4G01947 Striga asiatica HOM05D005421 ORTHO05D007601 4.4e-91 339.0 343 72.9
Actinidia35540 Actinidia chinensis HOM05D005421 ORTHO05D007601 5.7e-91 338.6 190 82.1
HPP92_020212 Vanilla planifolia HOM05D005421 ORTHO05D007601 5.7e-91 338.6 190 84.2
HPP92_020232 Vanilla planifolia HOM05D005421 ORTHO05D007601 5.7e-91 338.6 190 84.2
DCAR_004503 Daucus carota HOM05D005421 ORTHO05D007601 7.5e-91 338.2 190 82.1
Phvul.007G199400 Phaseolus vulgaris HOM05D005421 ORTHO05D007601 7.5e-91 338.2 190 82.1
PGR031G1007 Punica granatum HOM05D005421 ORTHO05D007601 7.5e-91 338.2 189 84.1
GSVIVG01031188001 Vitis vinifera HOM05D005421 ORTHO05D007601 7.5e-91 338.2 189 82.0
Solyc01g100060.4 Solanum lycopersicum HOM05D005421 ORTHO05D007601 1.3e-90 337.4 190 82.1
Sopen01g043590 Solanum pennellii HOM05D005421 ORTHO05D007601 1.3e-90 337.4 190 82.1
EL10Ac4g09870 Beta vulgaris HOM05D005421 ORTHO05D007601 1.7e-90 337.0 190 82.6
AUR62005243 Chenopodium quinoa HOM05D005421 ORTHO05D007601 1.7e-90 337.0 190 82.1
Duzib150G0691 Durio zibethinus HOM05D005421 ORTHO05D007601 4.8e-90 335.5 190 83.2
Hund07118 Selenicereus undatus HOM05D005421 ORTHO05D007601 4.8e-90 335.5 190 82.6
VMungo0720G1843 Vigna mungo HOM05D005421 ORTHO05D007601 4.8e-90 335.5 188 82.4
Sc16g0008670 Simmondsia chinensis HOM05D005421 ORTHO05D007601 8.2e-90 334.7 190 82.6
Zm00001eb095730 Zea mays HOM05D005421 ORTHO05D007601 8.2e-90 334.7 190 82.1
Migut.B01005 Erythranthe guttata HOM05D005421 ORTHO05D007601 1.1e-89 334.3 190 82.6
Cc02_g34540 Coffea canephora HOM05D005421 ORTHO05D007601 3.1e-89 332.8 189 82.5
Dinv30846 Davidia involucrata HOM05D005421 ORTHO05D007601 5.3e-89 332.0 190 82.6
TWI56G0052 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 7.0e-89 331.6 208 75.5
MBI18_g04564_MAGBIO Magnolia biondii HOM05D005421 ORTHO05D007601 1.2e-88 330.9 189 79.9
Os09g0103600 Oryza sativa ssp. japonica HOM05D005421 ORTHO05D007601 1.6e-88 330.5 190 80.5
SalBow1G5723 Salvia bowleyana HOM05D005421 ORTHO05D007601 4.5e-88 328.9 189 82.0
CDE02G0330 Ceratophyllum demersum HOM05D005421 ORTHO05D007601 2.2e-87 326.6 189 78.8
Mapoly0138s0022 Marchantia polymorpha HOM05D005421 ORTHO05D007601 2.5e-86 323.2 190 78.9
Nitab4.5_0003248g0020 Nicotiana tabacum HOM05D005421 ORTHO05D007601 4.7e-85 318.9 190 77.4
COL.COLO4_26689 Corchorus olitorius HOM05D005421 ORTHO05D007601 6.1e-85 318.5 190 79.5
SMO361G0640 Selaginella moellendorffii HOM05D005421 ORTHO05D007601 8.0e-85 318.2 190 77.9
AagrBONN_evm.TU.Sc2ySwM_117.208 Anthoceros agrestis HOM05D005421 ORTHO05D007601 1.8e-84 317.0 190 76.3
Rhsim11G0092200 Rhododendron simsii HOM05D005421 ORTHO05D007601 1.8e-84 317.0 239 66.9
vmacro01533 Vaccinium macrocarpon HOM05D005421 ORTHO05D007601 2.6e-83 313.2 242 65.7
Oeu045895.1 Olea europaea HOM05D005421 ORTHO05D007601 2.8e-82 309.7 208 73.1
CBR_g27792 Chara braunii HOM05D005421 ORTHO05D007601 2.4e-81 306.6 190 74.7
AUR62000721 Chenopodium quinoa HOM05D005421 ORTHO05D007601 9.1e-81 304.7 167 83.2
Pp3c1_35390 Physcomitrium patens HOM05D005421 ORTHO05D007601 1.6e-80 303.9 189 73.5
arahy.Tifrunner.gnm1.ann1.1MC3I0 Arachis hypogaea HOM05D005421 ORTHO05D007601 7.7e-80 301.6 266 59.0
COL.COLO4_07356 Corchorus olitorius HOM05D005421 ORTHO05D007601 1.0e-79 301.2 167 82.0
arahy.Tifrunner.gnm1.ann1.MB2RBZ Arachis hypogaea HOM05D005421 ORTHO05D007601 2.5e-78 296.6 200 71.5
Dinv24409 Davidia involucrata HOM05D005421 ORTHO05D007601 1.6e-77 293.9 169 84.0
FAN09G4258 Fragaria x ananassa HOM05D000389 ORTHO05D000287 4.7e-77 292.4 155 87.1
TWI38G1969 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 5.2e-76 288.9 190 70.5
Cre12.g503400 Chlamydomonas reinhardtii HOM05D005421 ORTHO05D007601 7.3e-70 268.5 190 63.7
Nn4g25707 Nelumbo nucifera HOM05D005421 ORTHO05D007601 2.8e-69 266.5 190 70.5
Peaxi162Scf00404g00814 Petunia axillaris HOM05D005421 ORTHO05D007601 7.0e-65 251.9 186 67.7
MCO01G394 Micromonas commoda HOM05D005421 ORTHO05D007601 3.2e-57 226.5 185 56.2
Haze_27467 Corylus avellana HOM05D005421 ORTHO05D007601 8.9e-52 208.4 184 52.7
PRCOL_00004539 Prasinoderma coloniale HOM05D005421 ORTHO05D007601 8.9e-52 208.4 192 53.6
Potri.005G021600 Populus trichocarpa HOM05D005421 ORTHO05D007601 1.6e-45 187.6 139 67.6
Lj9C202T10 Lonicera japonica HOM05D005421 ORTHO05D007601 8.4e-42 175.3 97 80.4
SEGI_13779 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 5.6e-38 162.5 94 77.7
Lj9A202T65 Lonicera japonica HOM05D005421 ORTHO05D007601 8.1e-37 158.7 93 77.4
Prupe.6G317400 Prunus persica HOM05D005421 ORTHO05D007601 1.8e-36 157.5 95 76.8
SEGI_07889 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 1.3e-23 114.8 90 62.2
ATR0469G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 3.3e-22 110.2 70 71.4
ATR1164G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 3.3e-22 110.2 70 71.4
TAR362G1077 Trochodendron aralioides HOM05D005421 ORTHO05D026565 2.7e-16 90.5 52 80.8
RcHm_v2.0_Chr7g0209371 Rosa chinensis HOM05D005421 ORTHO05D007601 5.6e-14 82.8 53 64.2
Lj3g0025046 Lotus japonicus HOM05D005421 ORTHO05D026565 1.3e-13 81.6 60 66.7
BcaB06g27834 Brassica carinata HOM05D005421 ORTHO05D031867 4.8e-13 79.7 69 60.9
Dinv05263 Davidia involucrata HOM05D002902 ORTHO05D008934 4.9e-10 69.7 42 73.8
BcaB06g29163 Brassica carinata HOM05D005421 ORTHO05D031077 1.4e-09 68.2 189 68.8
BcaB06g29165 Brassica carinata HOM05D011401 ORTHO05D018605 3.5e-08 63.5 118 39.8
BcaB06g29159 Brassica carinata HOM05D005421 ORTHO05D031077 2.5e-06 57.4 31 83.9
ATR0693G223 Amborella trichopoda HOM05D005421 ORTHO05D031077 7.4e-06 55.8 27 88.9


User provided reference genes

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