Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p29660 Brassica napus HOM05D000681 ORTHO05D100499 2.8e-88 328.6 162 100.0
BolC4t24929H Brassica oleracea HOM05D000681 ORTHO05D011601 1.5e-12 77.0 93 51.6
C04p33610 Brassica napus HOM05D000681 ORTHO05D011601 9.5e-12 74.3 93 50.5
Thhalv10003741m.g Eutrema salsugineum HOM05D000681 ORTHO05D005458 1.2e-09 67.4 45 80.0
Sp2g27920 Schrenkiella parvula HOM05D000681 ORTHO05D005458 1.2e-09 67.4 45 80.0
Aa31LG1G17090 Aethionema arabicum HOM05D000681 ORTHO05D005458 1.5e-09 67.0 45 77.8
Atru.chr4.340 Acer truncatum HOM05D000681 ORTHO05D005458 3.4e-09 65.9 45 75.6
AT5G64840 Arabidopsis thaliana HOM05D000681 ORTHO05D005458 4.4e-09 65.5 45 75.6
CARHR278850 Cardamine hirsuta HOM05D000681 ORTHO05D005458 9.8e-09 64.3 45 73.3
CiPaw.03G134000 Carya illinoinensis HOM05D000681 ORTHO05D005458 9.8e-09 64.3 45 75.6
Carub.0008s2567 Capsella rubella HOM05D000681 ORTHO05D005458 1.3e-08 63.9 45 75.6
Cfa002759 Carpinus fangiana HOM05D000681 ORTHO05D005458 1.7e-08 63.5 45 75.6
Haze_25051 Corylus avellana HOM05D000681 ORTHO05D005458 1.7e-08 63.5 45 75.6
Glyma.04G218900 Glycine max HOM05D000681 ORTHO05D005458 1.7e-08 63.5 45 73.3
Glyma.06G146900 Glycine max HOM05D000681 ORTHO05D005458 1.7e-08 63.5 45 73.3
THA.LOC104799282 Tarenaya hassleriana HOM05D000681 ORTHO05D005458 2.2e-08 63.2 45 73.3
Gohir.A06G149400 Gossypium hirsutum HOM05D005663 ORTHO05D007258 2.8e-08 62.8 46 71.7
Lj1g0006962 Lotus japonicus HOM05D000681 ORTHO05D005458 2.8e-08 62.8 45 71.1
THA.LOC104818476 Tarenaya hassleriana HOM05D000681 ORTHO05D005458 2.8e-08 62.8 45 73.3
AL8G42320 Arabidopsis lyrata HOM05D000681 ORTHO05D005458 3.7e-08 62.4 45 73.3
CAN.G347.2 Capsicum annuum HOM05D000681 ORTHO05D005458 6.3e-08 61.6 45 71.1
Eucgr.I00319 Eucalyptus grandis HOM05D000681 ORTHO05D005458 6.3e-08 61.6 45 71.1
Manes.12G143100 Manihot esculenta HOM05D000681 ORTHO05D005458 6.3e-08 61.6 45 71.1
Nitab4.5_0004840g0050 Nicotiana tabacum HOM05D000681 ORTHO05D005458 6.3e-08 61.6 45 71.1
Nitab4.5_0006520g0010 Nicotiana tabacum HOM05D000681 ORTHO05D005458 6.3e-08 61.6 45 71.1
Peaxi162Scf00106g02319 Petunia axillaris HOM05D000681 ORTHO05D005458 6.3e-08 61.6 45 71.1
Solyc04g051800.3 Solanum lycopersicum HOM05D000681 ORTHO05D005458 6.3e-08 61.6 45 71.1
Sopen04g023150 Solanum pennellii HOM05D000681 ORTHO05D005458 6.3e-08 61.6 45 71.1
PGSC0003DMG400016576 Solanum tuberosum HOM05D000681 ORTHO05D005458 6.3e-08 61.6 45 71.1
PGR004G1701 Punica granatum HOM05D000681 ORTHO05D005458 8.3e-08 61.2 45 71.1
BcaC02g10041 Brassica carinata HOM05D000681 ORTHO05D011601 1.1e-07 60.8 45 68.9
BolC9t59524H Brassica oleracea HOM05D000681 ORTHO05D005458 1.1e-07 60.8 45 71.1
COL.COLO4_11005 Corchorus olitorius HOM05D000681 ORTHO05D005458 1.1e-07 60.8 45 71.1
Duzib147G1662 Durio zibethinus HOM05D000681 ORTHO05D005458 1.1e-07 60.8 45 71.1
ECA232G3656 Erigeron canadensis HOM05D000681 ORTHO05D005458 1.1e-07 60.8 45 68.9
Gohir.A02G135600 Gossypium hirsutum HOM05D000681 ORTHO05D005458 1.1e-07 60.8 45 71.1
Gohir.A11G198000 Gossypium hirsutum HOM05D000681 ORTHO05D005458 1.1e-07 60.8 45 71.1
Gohir.D03G046533 Gossypium hirsutum HOM05D000681 ORTHO05D005458 1.1e-07 60.8 45 71.1
Gohir.D11G233700 Gossypium hirsutum HOM05D000681 ORTHO05D005458 1.1e-07 60.8 45 71.1
Gorai.003G047600 Gossypium raimondii HOM05D000681 ORTHO05D005458 1.1e-07 60.8 45 71.1
Gorai.007G244600 Gossypium raimondii HOM05D000681 ORTHO05D005458 1.1e-07 60.8 45 71.1
Hma1.2p1_0375F.1_g138760 Hydrangea macrophylla HOM05D000681 ORTHO05D005458 1.1e-07 60.8 45 71.1
Thecc.01G113800 Theobroma cacao HOM05D000681 ORTHO05D005458 1.1e-07 60.8 45 71.1
BcaB07g29761 Brassica carinata HOM05D000681 ORTHO05D005458 1.4e-07 60.5 45 71.1
BcaC03g18282 Brassica carinata HOM05D000681 ORTHO05D005458 1.4e-07 60.5 45 71.1
A02p43520 Brassica napus HOM05D000681 ORTHO05D005458 1.4e-07 60.5 45 71.1
A10p27550 Brassica napus HOM05D000681 ORTHO05D005458 1.4e-07 60.5 45 71.1
C02p63610 Brassica napus HOM05D000681 ORTHO05D005458 1.4e-07 60.5 45 71.1
BolC2t12427H Brassica oleracea HOM05D000681 ORTHO05D005458 1.4e-07 60.5 45 71.1
BraA10t44807Z Brassica rapa HOM05D000681 ORTHO05D005458 1.4e-07 60.5 45 71.1
Dinv42689 Davidia involucrata HOM05D000681 ORTHO05D005458 1.4e-07 60.5 45 68.9
Gohir.D06G155500 Gossypium hirsutum HOM05D005663 ORTHO05D007258 1.4e-07 60.5 46 69.6
Gorai.010G181700 Gossypium raimondii HOM05D005663 ORTHO05D007258 1.4e-07 60.5 46 69.6
Potri.007G080600 Populus trichocarpa HOM05D000681 ORTHO05D005458 1.4e-07 60.5 45 68.9
Sabra07G0067700 Salix brachista HOM05D000681 ORTHO05D005458 1.4e-07 60.5 45 68.9
C09p67620 Brassica napus HOM05D000681 ORTHO05D005458 1.8e-07 60.1 45 71.1
Dinv19483 Davidia involucrata HOM05D000681 ORTHO05D005458 1.8e-07 60.1 45 68.9
Lalb_Chr23g0272391 Lupinus albus HOM05D000681 ORTHO05D005458 1.8e-07 60.1 45 68.9
Rhsim08G0006300 Rhododendron simsii HOM05D000681 ORTHO05D005458 1.8e-07 60.1 45 68.9
Rhsim08G0007000 Rhododendron simsii HOM05D000681 ORTHO05D005458 1.8e-07 60.1 45 68.9
Sc09g0002800 Simmondsia chinensis HOM05D000681 ORTHO05D005458 1.8e-07 60.1 45 68.9
TWI77G0095 Tripterygium wilfordii HOM05D000681 ORTHO05D005458 1.8e-07 60.1 68 57.4
vmacro18636 Vaccinium macrocarpon HOM05D000681 ORTHO05D005458 1.8e-07 60.1 45 68.9
Migut.H02441 Erythranthe guttata HOM05D000681 ORTHO05D005458 2.4e-07 59.7 45 68.9
BraA02t09280Z Brassica rapa HOM05D000681 ORTHO05D005458 3.1e-07 59.3 45 68.9
Potri.005G084800 Populus trichocarpa HOM05D000681 ORTHO05D005458 3.1e-07 59.3 45 66.7
Prupe.6G171800 Prunus persica HOM05D000681 ORTHO05D005458 3.1e-07 59.3 45 66.7
SalBow6G0295 Salvia bowleyana HOM05D000681 ORTHO05D005458 3.1e-07 59.3 45 66.7
HanXRQChr15g0493501 Helianthus annuus HOM05D000681 ORTHO05D005458 4.1e-07 58.9 45 68.9
Phvul.009G139100 Phaseolus vulgaris HOM05D000681 ORTHO05D005458 4.1e-07 58.9 45 66.7
MSTRG.2527 Avicennia marina HOM05D000681 ORTHO05D005458 5.4e-07 58.5 45 66.7
CANSAT01G0682 Cannabis sativa HOM05D000681 ORTHO05D005458 5.4e-07 58.5 45 64.4
Duzib264G0717 Durio zibethinus HOM05D000681 ORTHO05D005458 5.4e-07 58.5 45 68.9
SalBow5G4766 Salvia bowleyana HOM05D000681 ORTHO05D005458 5.4e-07 58.5 43 69.8
Sp6g33480 Schrenkiella parvula HOM05D000681 ORTHO05D005458 5.4e-07 58.5 45 66.7
TAR381G0346 Trochodendron aralioides HOM05D000681 ORTHO05D005458 5.4e-07 58.5 45 64.4
BcaB08g37171 Brassica carinata HOM05D000681 ORTHO05D005458 7.0e-07 58.2 45 66.7
TPR.G23769 Trifolium pratense HOM05D000681 ORTHO05D005458 7.0e-07 58.2 45 66.7
Aa31LG3G17200 Aethionema arabicum HOM05D000681 ORTHO05D005458 9.2e-07 57.8 45 66.7
Ciclev10025045m.g Citrus clementina HOM05D000681 ORTHO05D005458 9.2e-07 57.8 45 66.7
PSO170G5235 Papaver somniferum HOM05D000681 ORTHO05D005458 9.2e-07 57.8 68 51.5
PSO210G1708 Papaver somniferum HOM05D000681 ORTHO05D005458 9.2e-07 57.8 68 51.5
Psat5g065080 Pisum sativum HOM05D000681 ORTHO05D005458 9.2e-07 57.8 45 66.7
QL06p031995 Quercus lobata HOM05D000681 ORTHO05D005458 9.2e-07 57.8 45 68.9
VMungo1309G3103 Vigna mungo HOM05D000681 ORTHO05D005458 9.2e-07 57.8 45 64.4
Medtr3g095010 Medicago truncatula HOM05D000681 ORTHO05D005458 1.2e-06 57.4 45 66.7
SGA_v2.0_scaffold2G01293 Striga asiatica HOM05D000681 ORTHO05D005458 1.2e-06 57.4 43 67.4
Ca_16896_v3 Cicer arietinum L. HOM05D000681 ORTHO05D005458 1.6e-06 57.0 45 64.4
Lj4A865T29 Lonicera japonica HOM05D000681 ORTHO05D005458 1.6e-06 57.0 45 64.4
Cc07_g16310 Coffea canephora HOM05D000681 ORTHO05D005458 2.0e-06 56.6 45 62.2
Thhalv10012861m.g Eutrema salsugineum HOM05D000681 ORTHO05D005458 2.0e-06 56.6 45 66.7
AT5G09930 Arabidopsis thaliana HOM05D000681 ORTHO05D005458 2.7e-06 56.2 45 62.2
arahy.Tifrunner.gnm1.ann1.G3SQ12 Arachis hypogaea HOM05D000681 ORTHO05D005458 2.7e-06 56.2 45 64.4
arahy.Tifrunner.gnm1.ann1.TR14KI Arachis hypogaea HOM05D000681 ORTHO05D005458 2.7e-06 56.2 45 64.4
CSS0026429 Camellia sinensis var. sinensis HOM05D000681 ORTHO05D005458 2.7e-06 56.2 45 66.7
CSS0032659 Camellia sinensis var. sinensis HOM05D000681 ORTHO05D005458 2.7e-06 56.2 45 66.7
CDE02G2865 Ceratophyllum demersum HOM05D000681 ORTHO05D005458 2.7e-06 56.2 54 63.0
CDE08G1085 Ceratophyllum demersum HOM05D000681 ORTHO05D005458 2.7e-06 56.2 54 63.0
ClCG01G016130 Citrullus lanatus HOM05D000681 ORTHO05D005458 2.7e-06 56.2 45 66.7
MELO3C007483.2 Cucumis melo HOM05D000681 ORTHO05D005458 2.7e-06 56.2 45 66.7
MD15G1331800 Malus domestica HOM05D000681 ORTHO05D005458 2.7e-06 56.2 45 62.2
HanXRQChr09g0259711 Helianthus annuus HOM05D000681 ORTHO05D005458 3.5e-06 55.8 45 64.4
Lsat_1_v5_gn_4_137440 Lactuca sativa HOM05D000681 ORTHO05D005458 3.5e-06 55.8 45 64.4
Sed0012802 Sechium edule HOM05D000681 ORTHO05D005458 3.5e-06 55.8 45 64.4
Aqoxy5G01993 Aquilegia oxysepala HOM05D000681 ORTHO05D005458 5.9e-06 55.1 45 62.2
EL10Ac4g09838 Beta vulgaris HOM05D000681 ORTHO05D005458 5.9e-06 55.1 45 62.2
CsaV3_6G042400 Cucumis sativus L. HOM05D000681 ORTHO05D005458 5.9e-06 55.1 45 64.4
ATR0564G351 Amborella trichopoda HOM05D000681 ORTHO05D005458 7.7e-06 54.7 54 61.1
Zm00001eb115000 Zea mays HOM05D000681 ORTHO05D005458 7.7e-06 54.7 45 64.4


User provided reference genes

Program Settings