Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p27880 Brassica napus HOM05D006439 ORTHO05D008152 0.0e+00 1846.2 936 100.0
BraA04t18280Z Brassica rapa HOM05D006439 ORTHO05D008152 0.0e+00 1662.5 888 95.2
BcaC02g07604 Brassica carinata HOM05D006439 ORTHO05D008152 0.0e+00 1628.6 883 93.9
BolC4t28018H Brassica oleracea HOM05D006439 ORTHO05D008152 0.0e+00 1624.8 882 94.0
BcaB06g28933 Brassica carinata HOM05D006439 ORTHO05D008152 0.0e+00 1582.8 915 88.7
Thhalv10017885m.g Eutrema salsugineum HOM05D006439 ORTHO05D008152 0.0e+00 1388.6 903 79.1
AL4G32530 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 0.0e+00 1347.8 904 77.3
AT2G36370 Arabidopsis thaliana HOM05D006439 ORTHO05D008152 0.0e+00 1326.6 904 76.0
CARHR130670 Cardamine hirsuta HOM05D006439 ORTHO05D008152 0.0e+00 1257.7 891 74.3
Sp4g18660 Schrenkiella parvula HOM05D006439 ORTHO05D008152 0.0e+00 1233.8 783 82.4
Aa31LG5G21550 Aethionema arabicum HOM05D006439 ORTHO05D008152 0.0e+00 1150.6 887 69.6
THA.LOC104823488 Tarenaya hassleriana HOM05D006439 ORTHO05D008152 0.0e+00 1109.0 902 63.2
QL07p039851 Quercus lobata HOM05D006439 ORTHO05D008152 1.3e-257 893.6 912 53.0
Gorai.007G371000 Gossypium raimondii HOM05D006439 ORTHO05D008152 4.8e-257 891.7 917 51.5
MD12G1021400 Malus domestica HOM05D006439 ORTHO05D008152 1.0e-251 874.0 917 51.3
Prupe.7G115000 Prunus persica HOM05D006439 ORTHO05D008152 1.0e-251 874.0 913 51.0
GSVIVG01033817001 Vitis vinifera HOM05D006439 ORTHO05D008152 1.2e-247 860.5 958 48.5
Cfa016567 Carpinus fangiana HOM05D006439 ORTHO05D008152 1.5e-247 860.1 917 50.1
CiPaw.09G010200 Carya illinoinensis HOM05D006439 ORTHO05D008152 2.0e-247 859.8 919 50.6
TWI74G0883 Tripterygium wilfordii HOM05D006439 ORTHO05D008152 2.4e-245 852.8 920 50.3
Hma1.2p1_0232F.1_g097640 Hydrangea macrophylla HOM05D006439 ORTHO05D008152 1.3e-241 840.5 916 49.1
Gohir.A11G321900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 8.2e-241 837.8 858 51.7
Medtr7g104170 Medicago truncatula HOM05D006439 ORTHO05D008152 4.9e-238 828.6 913 47.9
Lalb_Chr01g0018261 Lupinus albus HOM05D006439 ORTHO05D008152 9.7e-234 814.3 922 47.5
Manes.08G022900 Manihot esculenta HOM05D006439 ORTHO05D008152 9.7e-234 814.3 921 48.1
TPR.G19544 Trifolium pratense HOM05D006439 ORTHO05D008152 9.7e-234 814.3 915 48.1
Psat3g034720 Pisum sativum HOM05D006439 ORTHO05D008152 3.7e-233 812.4 920 47.3
FAN02G3052 Fragaria x ananassa HOM05D006439 ORTHO05D008152 4.1e-232 808.9 989 45.7
Phvul.001G188000 Phaseolus vulgaris HOM05D006439 ORTHO05D008152 1.5e-231 807.0 926 46.7
Lj1g0012097 Lotus japonicus HOM05D006439 ORTHO05D008152 6.5e-230 801.6 921 46.0
arahy.Tifrunner.gnm1.ann1.YQ8CLY Arachis hypogaea HOM05D006439 ORTHO05D008152 1.9e-229 800.0 943 46.0
Duzib093G0471 Durio zibethinus HOM05D006439 ORTHO05D008152 1.9e-229 800.0 933 47.2
Gohir.D11G340900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 4.2e-229 798.9 850 50.2
arahy.Tifrunner.gnm1.ann1.JQB9X3 Arachis hypogaea HOM05D006439 ORTHO05D008152 8.7e-227 791.2 949 45.4
Sopen10g035010 Solanum pennellii HOM05D006439 ORTHO05D008152 1.3e-225 787.3 909 46.4
Solyc10g085600.2 Solanum lycopersicum HOM05D006439 ORTHO05D008152 1.4e-224 783.9 909 46.1
Glyma.03G192900 Glycine max HOM05D006439 ORTHO05D008152 6.9e-224 781.6 923 45.3
Migut.L01768 Erythranthe guttata HOM05D006439 ORTHO05D008152 1.5e-215 753.8 929 45.6
FAN14G3294 Fragaria x ananassa HOM05D006439 ORTHO05D008152 4.5e-215 752.3 941 45.7
HanXRQChr09g0247281 Helianthus annuus HOM05D006439 ORTHO05D008152 1.7e-214 750.4 903 47.2
Cc06_g05440 Coffea canephora HOM05D006439 ORTHO05D008152 1.6e-212 743.8 916 44.5
Haze_19565 Corylus avellana HOM05D006439 ORTHO05D008152 1.6e-212 743.8 949 45.6
Lsat_1_v5_gn_6_69500 Lactuca sativa HOM05D006439 ORTHO05D008152 6.7e-211 738.4 880 46.7
ECA233G3232 Erigeron canadensis HOM05D006439 ORTHO05D008152 1.8e-208 730.3 917 44.4
Carub.0004s1817 Capsella rubella HOM05D006439 ORTHO05D008152 9.4e-205 718.0 468 79.9
Peaxi162Scf00146g00718 Petunia axillaris HOM05D006439 ORTHO05D008152 1.7e-201 707.2 867 44.8
Nn2g14057 Nelumbo nucifera HOM05D006439 ORTHO05D008152 5.3e-200 702.2 925 43.4
SGA_v2.0_scaffold184G39949 Striga asiatica HOM05D006439 ORTHO05D008152 5.3e-200 702.2 948 42.8
PSO384G3820 Papaver somniferum HOM05D006439 ORTHO05D008152 9.1e-200 701.4 905 43.4
Sc07g0005420 Simmondsia chinensis HOM05D006439 ORTHO05D008152 8.0e-196 688.3 860 44.8
RcHm_v2.0_Chr3g0472491 Rosa chinensis HOM05D006439 ORTHO05D008152 2.8e-193 679.9 760 48.9
Oeu034357.1 Olea europaea HOM05D006439 ORTHO05D008152 2.8e-185 653.3 943 40.9
Ca_08981_v3 Cicer arietinum L. HOM05D006439 ORTHO05D008152 3.3e-181 639.8 789 45.6
Cpa.g.sc5.59 Carica papaya HOM05D006439 ORTHO05D008152 3.6e-180 636.3 957 41.7
EL10Ac7g16960 Beta vulgaris HOM05D006439 ORTHO05D008152 1.4e-179 634.4 886 41.9
Thecc.05G084500 Theobroma cacao HOM05D006439 ORTHO05D008152 1.5e-178 630.9 655 52.7
Actinidia31281 Actinidia chinensis HOM05D006439 ORTHO05D008152 1.6e-175 620.9 790 44.2
SalBow5G0766 Salvia bowleyana HOM05D006439 ORTHO05D008152 2.0e-175 620.5 801 43.6
FvH4_6g18170 Fragaria vesca HOM05D006439 ORTHO05D008152 9.5e-173 611.7 914 39.2
CAN.G1099.9 Capsicum annuum HOM05D006439 ORTHO05D008152 1.2e-172 611.3 761 44.7
PGR142G3529 Punica granatum HOM05D006439 ORTHO05D008152 1.4e-171 607.8 806 43.3
Ciclev10011131m.g Citrus clementina HOM05D006439 ORTHO05D008152 6.0e-167 592.4 701 46.6
Os01g0968600 Oryza sativa ssp. japonica HOM05D006439 ORTHO05D008152 1.8e-163 580.9 918 37.7
VMungo1383G0775 Vigna mungo HOM05D006439 ORTHO05D008152 5.8e-162 575.9 675 48.3
AUR62028585 Chenopodium quinoa HOM05D006439 ORTHO05D008152 1.3e-158 564.7 842 40.5
Ah.15g091040 Amaranthus hybridus HOM05D006439 ORTHO05D008152 1.5e-157 561.2 824 40.0
Carub.0004s1816 Capsella rubella HOM05D006439 ORTHO05D008152 1.2e-146 525.0 357 72.5
Nitab4.5_0000381g0240 Nicotiana tabacum HOM05D006439 ORTHO05D008152 3.8e-145 520.0 757 40.2
vmacro08831 Vaccinium macrocarpon HOM05D006439 ORTHO05D008152 5.3e-139 499.6 656 43.0
DCAR_009146 Daucus carota HOM05D006439 ORTHO05D008152 2.3e-134 484.2 856 36.9
Aqoxy2G01352 Aquilegia oxysepala HOM05D006439 ORTHO05D008152 3.0e-134 483.8 656 42.1
Atru.chr8.1601 Acer truncatum HOM05D006439 ORTHO05D008152 3.7e-132 476.9 482 52.3
HPP92_005462 Vanilla planifolia HOM05D006439 ORTHO05D008152 1.5e-130 471.5 855 35.3
PSO801G0048 Papaver somniferum HOM05D006439 ORTHO05D008152 1.2e-122 445.3 759 38.5
TAR623G1631 Trochodendron aralioides HOM05D006439 ORTHO05D008152 6.9e-115 419.5 503 47.7
Atru.chr8.1600 Acer truncatum HOM05D006439 ORTHO05D008152 9.7e-109 399.1 438 47.5
Dinv21235 Davidia involucrata HOM05D000103 ORTHO05D008152 6.3e-108 396.4 408 52.9
Rhsim04G0133900 Rhododendron simsii HOM05D006439 ORTHO05D008152 6.1e-103 379.8 338 55.0
Zm00001eb139990 Zea mays HOM05D006439 ORTHO05D008152 2.0e-93 348.2 603 37.5
Pp3c16_1040 Physcomitrium patens HOM05D006439 ORTHO05D008152 2.0e-90 338.2 914 29.3
CSS0038647 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 7.7e-90 336.3 283 58.0
Dinv21234 Davidia involucrata HOM05D006439 ORTHO05D008152 5.3e-83 313.5 362 47.0
QL11p044009 Quercus lobata HOM05D006439 ORTHO05D009270 5.0e-81 307.0 517 39.7
MBI17_g23163_MAGBIO Magnolia biondii HOM05D006439 ORTHO05D008152 1.4e-78 298.9 800 30.4
Mapoly0116s0006 Marchantia polymorpha HOM05D006439 ORTHO05D008152 6.6e-65 253.4 908 25.1
Nitab4.5_0005447g0020 Nicotiana tabacum HOM05D006439 ORTHO05D008152 6.6e-65 253.4 446 36.1
SMO238G0046 Selaginella moellendorffii HOM05D006439 ORTHO05D008152 1.8e-62 245.4 848 26.5
Lj3A1001T30 Lonicera japonica HOM05D006439 ORTHO05D008152 4.1e-59 234.2 246 50.8
AagrBONN_evm.TU.Sc2ySwM_117.1948 Anthoceros agrestis HOM05D006439 ORTHO05D008152 7.3e-56 223.4 891 26.7
Ciclev10013912m.g Citrus clementina HOM05D006439 ORTHO05D008152 1.4e-51 209.1 172 59.3
QL07p039868 Quercus lobata HOM05D006439 ORTHO05D008152 7.8e-50 203.4 197 54.3
PGSC0003DMG402008399 Solanum tuberosum HOM05D006439 ORTHO05D008152 2.3e-49 201.8 171 54.4
VMungo1383G1144 Vigna mungo HOM05D006439 ORTHO05D008152 7.3e-48 196.8 188 45.7
RcHm_v2.0_Chr3g0472501 Rosa chinensis HOM05D006439 ORTHO05D008152 2.0e-45 188.7 151 58.3
Lj3A1001G26 Lonicera japonica HOM05D006439 ORTHO05D008152 1.6e-42 179.1 202 45.0
Lj3A1001T29 Lonicera japonica HOM05D006439 ORTHO05D008152 7.8e-42 176.8 321 38.0
SEGI_26522 Sequoiadendron giganteum HOM05D006439 ORTHO05D000001 3.0e-41 174.9 206 44.2
AL4G34520 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 4.4e-37 161.0 174 51.1
CAN.G1099.8 Capsicum annuum HOM05D006439 ORTHO05D008152 3.4e-29 134.8 131 47.3
VMungo1127G2301 Vigna mungo HOM05D006439 ORTHO05D008152 1.7e-28 132.5 235 36.6
Nitab4.5_0000381g0270 Nicotiana tabacum HOM05D006502 ORTHO05D007704 3.8e-28 131.3 123 50.4
SEGI_37059 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 1.6e-26 125.9 154 42.9
AL4G34560 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 2.7e-26 125.2 133 51.1
CSS0030357 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 1.3e-25 122.9 172 44.8
Aqoxy2G01351 Aquilegia oxysepala HOM05D006439 ORTHO05D008152 3.3e-24 118.2 123 40.7
TAR623G0848 Trochodendron aralioides HOM05D006439 ORTHO05D008152 2.8e-23 115.2 105 47.6
Lj3A1001T31 Lonicera japonica HOM05D006439 ORTHO05D008152 1.4e-22 112.8 97 54.6
SEGI_31112 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 1.8e-22 112.5 300 31.3
FAN09G3024 Fragaria x ananassa HOM05D006439 ORTHO05D008152 1.3e-20 106.3 158 38.6
Thecc.10G111400 Theobroma cacao HOM05D006439 ORTHO05D008152 8.4e-20 103.6 126 44.4
AUR62028586 Chenopodium quinoa HOM05D006439 ORTHO05D008152 9.3e-19 100.1 95 49.5
SEGI_02684 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 4.8e-15 87.8 102 43.1
CSS0006664 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 5.5e-11 74.3 94 42.6
A01p24280 Brassica napus HOM05D001905 ORTHO05D001820 5.1e-09 67.8 344 24.1
BraA01t02341Z Brassica rapa HOM05D001905 ORTHO05D001820 5.1e-09 67.8 344 24.1
AUR62033535 Chenopodium quinoa HOM05D006439 ORTHO05D008152 6.7e-09 67.4 60 53.3
BcaC09g50005 Brassica carinata HOM05D001905 ORTHO05D001820 8.7e-09 67.0 343 24.5
C01p30100 Brassica napus HOM05D001905 ORTHO05D001820 8.7e-09 67.0 343 24.5
BolC1t02954H Brassica oleracea HOM05D001905 ORTHO05D001820 8.7e-09 67.0 343 24.5
CSS0035414 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 2.5e-08 65.5 70 45.7
AL4G34300 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 9.6e-08 63.5 76 52.6
Pp3c17_7680 Physcomitrium patens HOM05D000530 ORTHO05D003341 9.6e-08 63.5 353 24.9
ClCG03G015120 Citrullus lanatus HOM05D003317 ORTHO05D003696 1.3e-07 63.2 343 28.6
SEGI_31670 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 1.3e-07 63.2 58 46.6
CAN.G955.3 Capsicum annuum HOM05D002125 ORTHO05D002105 2.1e-07 62.4 400 23.0
ECA232G2349 Erigeron canadensis HOM05D006439 ORTHO05D008321 1.4e-06 59.7 194 30.9
FvH4_2g24840 Fragaria vesca HOM05D000530 ORTHO05D000621 6.9e-06 57.4 283 24.0
SalBow7G4561 Salvia bowleyana HOM05D001905 ORTHO05D001820 6.9e-06 57.4 365 23.3
TWI60G1191 Tripterygium wilfordii HOM05D001905 ORTHO05D001820 6.9e-06 57.4 348 23.9
MBI01_g44281_MAGBIO Magnolia biondii HOM05D007176 ORTHO05D009050 9.0e-06 57.0 161 27.3


User provided reference genes

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