Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p23930 Brassica napus HOM05D016978 ORTHO05D018741 1.5e-115 419.5 205 100.0
A04p23950 Brassica napus HOM05D016978 ORTHO05D018741 1.5e-115 419.5 205 100.0
BraA04t17919Z Brassica rapa HOM05D016978 ORTHO05D018741 1.5e-115 419.5 205 100.0
BraA04t17917Z Brassica rapa HOM05D016978 ORTHO05D018741 3.7e-114 414.8 206 99.5
C04p60560 Brassica napus HOM05D016978 ORTHO05D018741 6.6e-111 404.1 207 96.6
C04p60630 Brassica napus HOM05D016978 ORTHO05D018741 6.6e-111 404.1 207 96.6
C04p60580 Brassica napus HOM05D016978 ORTHO05D018741 8.3e-106 387.1 199 96.5
BcaB06g28422 Brassica carinata HOM05D016978 ORTHO05D018741 5.1e-63 245.0 213 62.0
BcaC04g22224 Brassica carinata HOM05D000896 ORTHO05D000594 1.2e-16 90.9 137 35.0
A09p17570 Brassica napus HOM05D000896 ORTHO05D000594 1.2e-16 90.9 137 35.8
C09p21870 Brassica napus HOM05D000896 ORTHO05D000594 1.2e-16 90.9 137 35.0
BolC9t55092H Brassica oleracea HOM05D000896 ORTHO05D000594 1.2e-16 90.9 137 35.0
BraA09t37387Z Brassica rapa HOM05D000896 ORTHO05D000594 1.2e-16 90.9 137 35.8
Aa31LG5G5500 Aethionema arabicum HOM05D000896 ORTHO05D000594 2.8e-16 89.7 155 34.2
BcaB07g31212 Brassica carinata HOM05D000896 ORTHO05D000594 8.0e-16 88.2 137 35.0
Carub.0004s1302 Capsella rubella HOM05D000896 ORTHO05D000594 1.0e-15 87.8 152 33.6
Carub.0001s0530 Capsella rubella HOM05D000896 ORTHO05D000594 3.0e-15 86.3 138 37.0
THA.LOC104827390 Tarenaya hassleriana HOM05D000896 ORTHO05D000594 8.8e-15 84.7 149 36.2
Aa31LG5G5490 Aethionema arabicum HOM05D000896 ORTHO05D000594 3.4e-14 82.8 141 32.6
Aa31sc1610G20 Aethionema arabicum HOM05D000896 ORTHO05D000594 3.4e-14 82.8 141 32.6
Carub.0004s1432 Capsella rubella HOM05D000896 ORTHO05D000594 4.4e-14 82.4 144 37.5
BcaC02g07986 Brassica carinata HOM05D012749 ORTHO05D024259 7.5e-14 81.6 133 37.6
C04p61070 Brassica napus HOM05D012749 ORTHO05D024259 7.5e-14 81.6 133 37.6
BolC4t27591H Brassica oleracea HOM05D012749 ORTHO05D024259 7.5e-14 81.6 133 37.6
AL3G40220 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 1.7e-13 80.5 143 32.9
AT2G31420 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 1.7e-13 80.5 136 33.1
Carub.0004s1399 Capsella rubella HOM05D000896 ORTHO05D000594 1.7e-13 80.5 142 35.2
AL1G15890 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 2.8e-13 79.7 144 34.7
Thhalv10012233m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 2.8e-13 79.7 146 34.2
AT2G27410 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 3.7e-13 79.3 146 34.9
Carub.0003s2555 Capsella rubella HOM05D000896 ORTHO05D000594 3.7e-13 79.3 140 34.3
AT2G24670 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 8.3e-13 78.2 140 36.4
BolC1t01330H Brassica oleracea HOM05D000896 ORTHO05D000594 1.1e-12 77.8 126 32.5
Aa31LG1G8310 Aethionema arabicum HOM05D000896 ORTHO05D000594 1.4e-12 77.4 138 33.3
AT1G05920 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 1.4e-12 77.4 144 33.3
AL4G15340 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 1.8e-12 77.0 142 36.6
CARHR125380 Cardamine hirsuta HOM05D000896 ORTHO05D000594 1.8e-12 77.0 138 34.1
THA.LOC104827386 Tarenaya hassleriana HOM05D000896 ORTHO05D000594 1.8e-12 77.0 144 31.9
THA.LOC104827387 Tarenaya hassleriana HOM05D000896 ORTHO05D000594 1.8e-12 77.0 144 31.9
CARHR217360 Cardamine hirsuta HOM05D000896 ORTHO05D000594 2.4e-12 76.6 136 32.4
CARHR005050 Cardamine hirsuta HOM05D000896 ORTHO05D000594 3.1e-12 76.3 138 34.8
THA.LOC104827391 Tarenaya hassleriana HOM05D000896 ORTHO05D000594 3.1e-12 76.3 144 32.6
A04p24270 Brassica napus HOM05D000896 ORTHO05D000594 4.1e-12 75.9 148 35.1
BraA04t17946Z Brassica rapa HOM05D000896 ORTHO05D000594 4.1e-12 75.9 148 35.1
Aa31LG1G8320 Aethionema arabicum HOM05D000896 ORTHO05D000594 5.4e-12 75.5 150 34.0
Aa31LG1G8390 Aethionema arabicum HOM05D000896 ORTHO05D000594 5.4e-12 75.5 150 34.0
Aa31LG1G8400 Aethionema arabicum HOM05D000896 ORTHO05D000594 5.4e-12 75.5 138 33.3
AL1G15520 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 5.4e-12 75.5 137 32.8
Medtr5g007910 Medicago truncatula HOM05D000896 ORTHO05D000594 5.4e-12 75.5 143 32.2
AT3G49610 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 7.0e-12 75.1 148 32.4
BraA04t17955Z Brassica rapa HOM05D000896 ORTHO05D000594 7.0e-12 75.1 148 35.1
AL4G27140 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 1.2e-11 74.3 151 34.4
BcaC02g07991 Brassica carinata HOM05D012749 ORTHO05D039536 1.2e-11 74.3 140 33.6
AL3G40940 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 1.6e-11 73.9 142 29.6
AT3G24850 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 1.6e-11 73.9 140 32.1
Psat4g120360 Pisum sativum HOM05D000896 ORTHO05D000594 1.6e-11 73.9 172 29.1
BcaC02g07964 Brassica carinata HOM05D000896 ORTHO05D000594 2.0e-11 73.6 148 34.5
TPR.G1144 Trifolium pratense HOM05D000896 ORTHO05D000594 2.0e-11 73.6 145 36.6
C04p60990 Brassica napus HOM05D012749 ORTHO05D039536 2.7e-11 73.2 140 33.6
A04p24380 Brassica napus HOM05D000896 ORTHO05D000594 3.5e-11 72.8 148 34.5
Psat0s5759g0040 Pisum sativum HOM05D000896 ORTHO05D000594 3.5e-11 72.8 172 28.5
Psat4g122800 Pisum sativum HOM05D000896 ORTHO05D000594 3.5e-11 72.8 172 28.5
TPR.G12242 Trifolium pratense HOM05D000896 ORTHO05D000594 3.5e-11 72.8 145 35.9
BraA04t17973Z Brassica rapa HOM05D000896 ORTHO05D000594 4.5e-11 72.4 148 33.8
AL3G40610 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 5.9e-11 72.0 142 29.6
AL4G26970 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 7.8e-11 71.6 149 34.2
CARHR005450 Cardamine hirsuta HOM05D000896 ORTHO05D000594 7.8e-11 71.6 144 34.7
BcaB06g28543 Brassica carinata HOM05D012749 ORTHO05D000594 1.0e-10 71.2 151 33.1
C04p61400 Brassica napus HOM05D000896 ORTHO05D000594 1.0e-10 71.2 148 33.8
Carub.0322s0001 Capsella rubella HOM05D000896 ORTHO05D000594 1.3e-10 70.9 147 32.7
ECA234G4629 Erigeron canadensis HOM05D000896 ORTHO05D000594 1.3e-10 70.9 141 35.5
Medtr3g452640 Medicago truncatula HOM05D000896 ORTHO05D000594 1.3e-10 70.9 149 29.5
AL4G27540 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 1.7e-10 70.5 132 31.8
A04p24520 Brassica napus HOM05D000896 ORTHO05D000594 1.7e-10 70.5 148 33.8
Thhalv10029471m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 1.7e-10 70.5 151 31.1
AL1G46070 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 2.3e-10 70.1 147 34.0
Gohir.D12G042950 Gossypium hirsutum HOM05D000896 ORTHO05D000594 2.3e-10 70.1 145 32.4
THA.LOC104826207 Tarenaya hassleriana HOM05D000896 ORTHO05D000594 2.3e-10 70.1 136 33.1
Duzib138G1815 Durio zibethinus HOM05D000896 ORTHO05D000594 2.9e-10 69.7 146 31.5
HanXRQChr16g0528671 Helianthus annuus HOM05D000896 ORTHO05D000594 2.9e-10 69.7 141 33.3
Psat4g124560 Pisum sativum HOM05D000896 ORTHO05D000594 2.9e-10 69.7 142 30.3
AL7G25460 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 3.8e-10 69.3 143 30.8
BolC4t27609H Brassica oleracea HOM05D000896 ORTHO05D000594 5.0e-10 68.9 153 32.0
HanXRQChr03g0076911 Helianthus annuus HOM05D000896 ORTHO05D000594 6.6e-10 68.6 130 33.1
C04p61210 Brassica napus HOM05D000896 ORTHO05D000594 8.6e-10 68.2 153 32.0
Carub.0007s1353 Capsella rubella HOM05D000896 ORTHO05D000594 8.6e-10 68.2 146 30.1
Gohir.A12G043480 Gossypium hirsutum HOM05D000896 ORTHO05D000594 8.6e-10 68.2 145 31.7
Gohir.A12G043560 Gossypium hirsutum HOM05D000896 ORTHO05D000594 8.6e-10 68.2 145 31.7
Gohir.A12G043720 Gossypium hirsutum HOM05D000896 ORTHO05D000594 8.6e-10 68.2 145 31.7
HanXRQChr16g0528541 Helianthus annuus HOM05D000896 ORTHO05D000594 8.6e-10 68.2 140 30.7
Gohir.D12G043450 Gossypium hirsutum HOM05D000896 ORTHO05D000594 1.1e-09 67.8 145 31.7
SpUn0479_0020 Schrenkiella parvula HOM05D000896 ORTHO05D000594 1.1e-09 67.8 143 32.9
AL1G15880 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 1.5e-09 67.4 141 31.2
Ca_13757_v3 Cicer arietinum L. HOM05D000896 ORTHO05D000594 1.9e-09 67.0 150 31.3
BcaC05g24385 Brassica carinata HOM05D000896 ORTHO05D000594 2.5e-09 66.6 128 35.2
C05p03790 Brassica napus HOM05D000896 ORTHO05D000594 2.5e-09 66.6 128 35.2
BolC5t29156H Brassica oleracea HOM05D000896 ORTHO05D000594 2.5e-09 66.6 128 35.2
BcaB06g28558 Brassica carinata HOM05D000896 ORTHO05D000594 3.3e-09 66.2 187 27.8
ECA234G4860 Erigeron canadensis HOM05D000896 ORTHO05D000594 3.3e-09 66.2 131 32.8
Gorai.008G045700 Gossypium raimondii HOM05D000896 ORTHO05D000594 3.3e-09 66.2 145 31.0
THA.LOC104824133 Tarenaya hassleriana HOM05D000896 ORTHO05D000594 3.3e-09 66.2 132 31.1
THA.LOC104827678 Tarenaya hassleriana HOM05D000896 ORTHO05D000594 3.3e-09 66.2 132 31.1
BcaB04g18266 Brassica carinata HOM05D000896 ORTHO05D000594 4.3e-09 65.9 146 34.9
CARHR101530 Cardamine hirsuta HOM05D000896 ORTHO05D000594 4.3e-09 65.9 104 36.5
Medtr5g007890 Medicago truncatula HOM05D000896 ORTHO05D000594 4.3e-09 65.9 127 29.1
Medtr5g007950 Medicago truncatula HOM05D000896 ORTHO05D000594 4.3e-09 65.9 127 29.1
AT1G32030 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 5.6e-09 65.5 148 32.4
BraA10t42685Z Brassica rapa HOM05D000896 ORTHO05D000594 5.6e-09 65.5 127 33.9
Ca_23866_v3 Cicer arietinum L. HOM05D000896 ORTHO05D000594 7.3e-09 65.1 145 29.7
Lalb_Chr09g0329091 Lupinus albus HOM05D000896 ORTHO05D000594 7.3e-09 65.1 132 31.1
Medtr7g098870 Medicago truncatula HOM05D000896 ORTHO05D000594 9.5e-09 64.7 140 30.0
Thhalv10009508m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 1.2e-08 64.3 151 31.1
Psat5g258240 Pisum sativum HOM05D000896 ORTHO05D000594 1.2e-08 64.3 144 35.4
Lsat_1_v5_gn_4_16560 Lactuca sativa HOM05D000896 ORTHO05D000594 1.6e-08 63.9 132 38.6
Medtr5g092880 Medicago truncatula HOM05D000896 ORTHO05D000594 1.6e-08 63.9 145 34.5
BcaB06g28445 Brassica carinata HOM05D000896 ORTHO05D000594 2.1e-08 63.5 155 29.0
Lj4g0007022 Lotus japonicus HOM05D000896 ORTHO05D000594 2.8e-08 63.2 144 29.9
BcaB07g32861 Brassica carinata HOM05D000896 ORTHO05D000594 3.6e-08 62.8 147 28.6
C05p31330 Brassica napus HOM05D000896 ORTHO05D000594 3.6e-08 62.8 147 29.9
Lsat_1_v5_gn_4_16540 Lactuca sativa HOM05D000896 ORTHO05D000594 3.6e-08 62.8 126 35.7
A09p67360 Brassica napus HOM05D000896 ORTHO05D000594 4.7e-08 62.4 147 33.3
BraA09t42067Z Brassica rapa HOM05D000896 ORTHO05D000594 4.7e-08 62.4 147 33.3
Cfa004780 Carpinus fangiana HOM05D000896 ORTHO05D000594 4.7e-08 62.4 144 30.6
Ca_22951_v3 Cicer arietinum L. HOM05D000896 ORTHO05D000594 4.7e-08 62.4 146 31.5
Carub.0007s3741 Capsella rubella HOM05D000896 ORTHO05D000594 6.1e-08 62.0 149 28.9
Cfa004785 Carpinus fangiana HOM05D000896 ORTHO05D000594 6.1e-08 62.0 143 32.9
A10p04160 Brassica napus HOM05D000896 ORTHO05D000594 8.0e-08 61.6 127 32.3
Lsat_1_v5_gn_4_20620 Lactuca sativa HOM05D000896 ORTHO05D000594 8.0e-08 61.6 137 33.6
Phvul.006G044300 Phaseolus vulgaris HOM05D000896 ORTHO05D000594 8.0e-08 61.6 144 29.9
Phvul.008G266500 Phaseolus vulgaris HOM05D000896 ORTHO05D000594 8.0e-08 61.6 137 29.9
Rhsim02G0212200 Rhododendron simsii HOM05D000896 ORTHO05D000594 8.0e-08 61.6 142 34.5
Glyma.01G187000 Glycine max HOM05D000896 ORTHO05D000594 1.0e-07 61.2 117 35.0
Aa31LG1G8430 Aethionema arabicum HOM05D000896 ORTHO05D000594 1.4e-07 60.8 148 28.4
Glyma.01G187100 Glycine max HOM05D000896 ORTHO05D000594 1.4e-07 60.8 142 31.7
TPR.G28339 Trifolium pratense HOM05D000896 ORTHO05D000594 1.4e-07 60.8 139 33.1
BcaB06g28569 Brassica carinata HOM05D000896 ORTHO05D000594 1.8e-07 60.5 145 29.0
Potri.015G014200 Populus trichocarpa HOM05D000896 ORTHO05D000594 1.8e-07 60.5 142 35.2
BcaB06g28447 Brassica carinata HOM05D000896 ORTHO05D000594 2.3e-07 60.1 151 27.2
BcaC05g27223 Brassica carinata HOM05D000896 ORTHO05D000594 2.3e-07 60.1 147 28.6
BolC5t31856H Brassica oleracea HOM05D000896 ORTHO05D000594 2.3e-07 60.1 147 28.6
Ca_22963_v3 Cicer arietinum L. HOM05D000896 ORTHO05D000594 2.3e-07 60.1 145 29.7
Ca_22965_v3 Cicer arietinum L. HOM05D000896 ORTHO05D000594 2.3e-07 60.1 145 29.7
Glyma.01G113800 Glycine max HOM05D000896 ORTHO05D000594 2.3e-07 60.1 117 35.9
CAN.G1140.8 Capsicum annuum HOM05D000896 ORTHO05D000594 3.0e-07 59.7 156 28.2
Cfa004783 Carpinus fangiana HOM05D000896 ORTHO05D000594 3.0e-07 59.7 144 29.2
Glyma.01G113600 Glycine max HOM05D000896 ORTHO05D000594 3.0e-07 59.7 112 35.7
Psat2g011800 Pisum sativum HOM05D000896 ORTHO05D000594 3.0e-07 59.7 146 32.9
PGR044G1601 Punica granatum HOM05D000896 ORTHO05D000594 3.0e-07 59.7 130 31.5
AL7G52070 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 4.0e-07 59.3 148 31.1
A09p34210 Brassica napus HOM05D000896 ORTHO05D000594 4.0e-07 59.3 147 28.6
C05p03980 Brassica napus HOM05D000896 ORTHO05D000594 4.0e-07 59.3 145 28.3
BolC5t29176H Brassica oleracea HOM05D000896 ORTHO05D000594 4.0e-07 59.3 145 28.3
BraA09t38969Z Brassica rapa HOM05D000896 ORTHO05D000594 4.0e-07 59.3 147 28.6
Cfa004777 Carpinus fangiana HOM05D000896 ORTHO05D000594 4.0e-07 59.3 140 29.3
ECA246G1822 Erigeron canadensis HOM05D000896 ORTHO05D000594 4.0e-07 59.3 138 31.9
BcaC07g42126 Brassica carinata HOM05D000896 ORTHO05D000594 5.2e-07 58.9 147 32.7
C08p51670 Brassica napus HOM05D000896 ORTHO05D000594 5.2e-07 58.9 147 32.7
BolC8t52695H Brassica oleracea HOM05D000896 ORTHO05D000594 5.2e-07 58.9 147 32.7
Cfa004784 Carpinus fangiana HOM05D000896 ORTHO05D000594 5.2e-07 58.9 143 30.8
Eucgr.L00710 Eucalyptus grandis HOM05D000896 ORTHO05D000594 5.2e-07 58.9 109 35.8
Potri.015G014700 Populus trichocarpa HOM05D000896 ORTHO05D000594 5.2e-07 58.9 142 32.4
Lsat_1_v5_gn_4_21000 Lactuca sativa HOM05D000896 ORTHO05D000594 6.8e-07 58.5 128 33.6
PGR044G1241 Punica granatum HOM05D000896 ORTHO05D000594 6.8e-07 58.5 128 32.0
Lsat_1_v5_gn_4_20980 Lactuca sativa HOM05D000896 ORTHO05D000594 8.9e-07 58.2 134 36.6
PGSC0003DMG400043436 Solanum tuberosum HOM05D000896 ORTHO05D000594 8.9e-07 58.2 128 25.8
BcaC05g24358 Brassica carinata HOM05D000896 ORTHO05D000594 1.2e-06 57.8 145 28.3
QL03p038238 Quercus lobata HOM05D000896 ORTHO05D000594 1.2e-06 57.8 148 31.8
Rhsim02G0210800 Rhododendron simsii HOM05D000896 ORTHO05D000594 1.2e-06 57.8 142 34.5
BcaB02g06859 Brassica carinata HOM05D000896 ORTHO05D000594 1.5e-06 57.4 129 34.9
TPR.G1152 Trifolium pratense HOM05D000896 ORTHO05D000594 1.5e-06 57.4 149 30.2
AL5G29460 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 2.0e-06 57.0 147 29.3
Glyma.03G105900 Glycine max HOM05D000896 ORTHO05D000594 2.0e-06 57.0 117 35.9
TWI60G0512 Tripterygium wilfordii HOM05D000896 ORTHO05D000594 2.0e-06 57.0 149 30.2
BcaC02g07220 Brassica carinata HOM05D000896 ORTHO05D000594 2.6e-06 56.6 133 25.6
A10p04620 Brassica napus HOM05D000896 ORTHO05D000594 2.6e-06 56.6 142 29.6
BolC4t28489H Brassica oleracea HOM05D000896 ORTHO05D000594 2.6e-06 56.6 133 25.6
BraA10t42727Z Brassica rapa HOM05D000896 ORTHO05D000594 2.6e-06 56.6 142 29.6
TPR.G1176 Trifolium pratense HOM05D000896 ORTHO05D000594 2.6e-06 56.6 132 28.8
C04p69900 Brassica napus HOM05D000896 ORTHO05D000594 4.4e-06 55.8 133 25.6
BraA04t18691Z Brassica rapa HOM05D000896 ORTHO05D000594 4.4e-06 55.8 123 27.6
HanXRQChr08g0217011 Helianthus annuus HOM05D000896 ORTHO05D000594 4.4e-06 55.8 131 32.1
Ciclev10030162m.g Citrus clementina HOM05D000896 ORTHO05D000594 5.7e-06 55.5 135 34.8
PGSC0003DMG400035412 Solanum tuberosum HOM05D000896 ORTHO05D000594 5.7e-06 55.5 128 25.8
Dinv40965 Davidia involucrata HOM05D000896 ORTHO05D000594 7.5e-06 55.1 141 27.7
Rhsim02G0212000 Rhododendron simsii HOM05D000896 ORTHO05D000594 7.5e-06 55.1 141 33.3
SGA_v2.0_scaffold257G45705 Striga asiatica HOM05D000896 ORTHO05D000594 9.8e-06 54.7 140 32.1
TWI34G0441 Tripterygium wilfordii HOM05D000896 ORTHO05D000594 9.8e-06 54.7 147 28.6


User provided reference genes

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