Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p23470 Brassica napus HOM05D005775 ORTHO05D000023 6.8e-228 793.9 472 100.0
BraA04t17874Z Brassica rapa HOM05D005775 ORTHO05D000023 1.9e-225 785.8 472 98.3
BolC4t27488H Brassica oleracea HOM05D005775 ORTHO05D000023 2.0e-224 782.3 472 98.1
C04p59780 Brassica napus HOM05D005775 ORTHO05D000023 1.0e-223 780.0 472 98.3
Thhalv10016605m.g Eutrema salsugineum HOM05D005775 ORTHO05D000023 5.3e-196 688.0 472 86.7
Sp4g13280 Schrenkiella parvula HOM05D005775 ORTHO05D000023 1.3e-194 683.3 453 89.8
AT2G30780 Arabidopsis thaliana HOM05D005775 ORTHO05D000023 1.3e-178 630.2 451 84.7
CARHR124250 Cardamine hirsuta HOM05D005775 ORTHO05D000023 1.6e-176 623.2 452 84.7
AL4G25710 Arabidopsis lyrata HOM05D005775 ORTHO05D000023 3.0e-175 619.0 444 84.9
Carub.0004s1199 Capsella rubella HOM05D005775 ORTHO05D000023 4.3e-174 615.1 451 82.9
AL4G25690 Arabidopsis lyrata HOM05D005775 ORTHO05D000023 2.5e-169 599.4 427 86.2
C04p19810 Brassica napus HOM05D005775 ORTHO05D000023 5.3e-164 581.6 471 67.9
Aa31LG5G6080 Aethionema arabicum HOM05D005775 ORTHO05D000023 1.2e-163 580.5 465 77.6
BcaB02g10341 Brassica carinata HOM05D005775 ORTHO05D000023 3.9e-159 565.5 459 76.5
THA.LOC104800814 Tarenaya hassleriana HOM05D005775 ORTHO05D000023 2.5e-145 519.6 450 72.4
Rhsim01G0278600 Rhododendron simsii HOM05D005775 ORTHO05D000023 3.1e-103 379.8 449 59.5
CSS0012831 Camellia sinensis var. sinensis HOM05D005775 ORTHO05D000023 2.0e-102 377.1 424 60.8
Lj2C1182T1 Lonicera japonica HOM05D005775 ORTHO05D000023 2.0e-102 377.1 424 61.6
Peaxi162Scf00517g00426 Petunia axillaris HOM05D005775 ORTHO05D000023 1.1e-97 361.3 447 56.4
Prupe.8G249700 Prunus persica HOM05D005775 ORTHO05D000023 1.1e-97 361.3 424 59.2
Thecc.01G287300 Theobroma cacao HOM05D005775 ORTHO05D000023 4.3e-97 359.4 451 56.8
Haze_04786 Corylus avellana HOM05D005775 ORTHO05D000023 1.2e-96 357.8 451 57.0
Aqoxy2G03167 Aquilegia oxysepala HOM05D005775 ORTHO05D000023 1.8e-95 354.0 423 56.7
Actinidia24301 Actinidia chinensis HOM05D005775 ORTHO05D000023 8.9e-95 351.7 424 58.0
Manes.01G212200 Manihot esculenta HOM05D005775 ORTHO05D000023 9.9e-94 348.2 424 57.8
Ciclev10019759m.g Citrus clementina HOM05D005775 ORTHO05D000023 3.8e-93 346.3 424 59.2
Cpa.g.sc731.2 Carica papaya HOM05D005775 ORTHO05D000023 4.9e-93 345.9 449 55.0
Gorai.004G084600 Gossypium raimondii HOM05D005775 ORTHO05D000023 4.9e-93 345.9 452 55.8
GSVIVG01011040001 Vitis vinifera HOM05D005775 ORTHO05D000023 6.4e-93 345.5 420 58.6
Gohir.D08G079600 Gossypium hirsutum HOM05D005775 ORTHO05D000023 1.9e-92 344.0 452 55.5
vmacro02530 Vaccinium macrocarpon HOM05D005775 ORTHO05D000023 3.2e-92 343.2 424 57.8
Gohir.A08G071400 Gossypium hirsutum HOM05D005775 ORTHO05D000023 2.7e-91 340.1 452 55.5
Dinv11278 Davidia involucrata HOM05D005775 ORTHO05D000023 7.8e-91 338.6 424 57.5
HanXRQChr09g0252061 Helianthus annuus HOM05D005775 ORTHO05D000023 3.0e-90 336.7 446 54.9
Lalb_Chr17g0335721 Lupinus albus HOM05D005775 ORTHO05D000023 3.0e-90 336.7 425 56.2
Dinv32979 Davidia involucrata HOM05D005775 ORTHO05D000023 1.1e-89 334.7 426 57.3
DCAR_005831 Daucus carota HOM05D005775 ORTHO05D000023 1.5e-89 334.3 426 56.8
Hund05366 Selenicereus undatus HOM05D005775 ORTHO05D000023 1.9e-89 334.0 429 56.2
Cc01_g19990 Coffea canephora HOM05D005775 ORTHO05D000023 7.3e-89 332.0 424 57.8
Glyma.03G148400 Glycine max HOM05D005775 ORTHO05D000023 7.3e-89 332.0 424 54.7
Sc17g0003740 Simmondsia chinensis HOM05D005775 ORTHO05D000023 4.7e-88 329.3 425 55.3
THA.LOC104817539 Tarenaya hassleriana HOM05D005775 ORTHO05D000023 1.1e-87 328.2 446 54.0
CAN.G438.46 Capsicum annuum HOM05D005775 ORTHO05D000023 1.8e-87 327.4 424 55.7
Solyc07g053060.3 Solanum lycopersicum HOM05D005775 ORTHO05D000023 1.8e-87 327.4 424 56.4
RcHm_v2.0_Chr6g0292231 Rosa chinensis HOM05D005775 ORTHO05D000023 2.4e-87 327.0 426 56.1
Lj1g0019119 Lotus japonicus HOM05D005775 ORTHO05D000023 1.2e-86 324.7 431 53.6
MSTRG.12583 Avicennia marina HOM05D005775 ORTHO05D000023 5.8e-86 322.4 447 52.6
ClCG00G003600 Citrullus lanatus HOM05D005775 ORTHO05D000023 7.6e-86 322.0 436 41.7
Oeu047904.1 Olea europaea HOM05D005775 ORTHO05D000023 1.3e-85 321.2 424 54.7
DCAR_002776 Daucus carota HOM05D005775 ORTHO05D000023 2.2e-85 320.5 428 54.4
FAN20G1843 Fragaria x ananassa HOM05D005775 ORTHO05D000023 2.2e-85 320.5 426 55.4
Migut.N02129 Erythranthe guttata HOM05D005775 ORTHO05D000023 4.9e-85 319.3 440 53.9
CiPaw.09G181700 Carya illinoinensis HOM05D005775 ORTHO05D000023 6.4e-85 318.9 424 54.7
HanXRQChr12g0362741 Helianthus annuus HOM05D005775 ORTHO05D000023 8.4e-85 318.5 426 54.5
Sopen07g026610 Solanum pennellii HOM05D005775 ORTHO05D000023 8.4e-85 318.5 424 55.4
Glyma.19G151700 Glycine max HOM05D005775 ORTHO05D000023 1.1e-84 318.2 424 54.7
Hma1.2p1_0209F.1_g089290 Hydrangea macrophylla HOM05D005775 ORTHO05D000023 1.1e-84 318.2 430 55.8
TAR365G0919 Trochodendron aralioides HOM05D005775 ORTHO05D000023 1.1e-84 318.2 447 53.7
PGSC0003DMG400026158 Solanum tuberosum HOM05D005775 ORTHO05D000023 1.4e-84 317.8 424 55.2
ClCG00G000240 Citrullus lanatus HOM05D005775 ORTHO05D000023 9.3e-84 315.1 425 55.8
ClCG10G003500 Citrullus lanatus HOM05D005775 ORTHO05D000023 9.3e-84 315.1 425 55.8
ECA234G1745 Erigeron canadensis HOM05D005775 ORTHO05D000023 2.1e-83 313.9 434 53.9
QL12p023176 Quercus lobata HOM05D005775 ORTHO05D000023 2.1e-83 313.9 425 55.8
CANSAT25G1854 Cannabis sativa HOM05D005775 ORTHO05D000023 3.5e-83 313.2 427 53.4
Eucgr.H01610 Eucalyptus grandis HOM05D005775 ORTHO05D000023 3.9e-82 309.7 441 54.2
Potri.016G119600 Populus trichocarpa HOM05D005775 ORTHO05D000023 1.1e-81 308.1 374 59.4
Rhsim13G0020300 Rhododendron simsii HOM05D005775 ORTHO05D000023 1.1e-81 308.1 450 52.7
COL.COLO4_08057 Corchorus olitorius HOM05D005775 ORTHO05D000023 2.5e-81 307.0 461 51.0
MELO3C014018.2 Cucumis melo HOM05D005775 ORTHO05D000023 2.5e-81 307.0 423 54.6
AUR62037928 Chenopodium quinoa HOM05D005775 ORTHO05D000023 7.3e-81 305.4 374 59.1
ATR0487G016 Amborella trichopoda HOM05D005775 ORTHO05D000023 1.6e-80 304.3 411 55.5
Sabra16G0115500 Salix brachista HOM05D005775 ORTHO05D000023 1.8e-79 300.8 424 54.5
FAN24G2890 Fragaria x ananassa HOM05D005775 ORTHO05D000023 5.3e-79 299.3 426 53.5
EL10Ac7g17159 Beta vulgaris HOM05D005775 ORTHO05D000023 6.9e-79 298.9 372 58.3
Sed0017897 Sechium edule HOM05D005775 ORTHO05D000023 1.5e-78 297.7 423 53.2
Ah.08g220410 Amaranthus hybridus HOM05D005775 ORTHO05D000023 3.4e-78 296.6 423 53.7
AUR62043492 Chenopodium quinoa HOM05D005775 ORTHO05D006285 3.4e-78 296.6 356 60.4
Medtr5g076010 Medicago truncatula HOM05D005775 ORTHO05D000023 4.5e-78 296.2 444 51.8
FAN27G3110 Fragaria x ananassa HOM05D005775 ORTHO05D000023 2.2e-77 293.9 424 52.8
CsaV3_3G003500 Cucumis sativus L. HOM05D005775 ORTHO05D000023 2.9e-77 293.5 407 55.3
TAR636G1825 Trochodendron aralioides HOM05D005775 ORTHO05D000023 2.9e-77 293.5 424 52.6
Medtr2g049540 Medicago truncatula HOM05D005775 ORTHO05D000023 6.4e-77 292.4 425 52.5
Atru.chr5.1309 Acer truncatum HOM05D005775 ORTHO05D000023 8.4e-77 292.0 403 56.6
SalBow2G0958 Salvia bowleyana HOM05D005775 ORTHO05D000023 1.1e-76 291.6 421 53.2
MBI18_g06533_MAGBIO Magnolia biondii HOM05D005775 ORTHO05D000023 2.4e-76 290.4 428 52.3
MD03G1273200 Malus domestica HOM05D005775 ORTHO05D000023 5.4e-76 289.3 424 52.4
Aa31LG1G29420 Aethionema arabicum HOM05D005775 ORTHO05D000023 9.3e-76 288.5 435 51.3
SHI15422 Sapria himalayana HOM05D005775 ORTHO05D000023 1.2e-75 288.1 365 42.5
TWI14G1024 Tripterygium wilfordii HOM05D005775 ORTHO05D000023 3.5e-75 286.6 421 54.2
FAN15G0955 Fragaria x ananassa HOM05D005775 ORTHO05D000023 7.9e-75 285.4 426 52.1
Migut.O00883 Erythranthe guttata HOM05D005775 ORTHO05D000023 1.0e-74 285.0 384 56.2
VMungo1383G3055 Vigna mungo HOM05D005775 ORTHO05D000023 1.0e-74 285.0 424 52.4
Psat1g018400 Pisum sativum HOM05D005775 ORTHO05D000023 1.3e-74 284.6 436 50.2
Lsat_1_v5_gn_6_117561 Lactuca sativa HOM05D005775 ORTHO05D000023 2.3e-74 283.9 451 49.9
Phvul.001G146400 Phaseolus vulgaris HOM05D005775 ORTHO05D000023 3.9e-74 283.1 451 49.9
arahy.Tifrunner.gnm1.ann1.9RSW73 Arachis hypogaea HOM05D005775 ORTHO05D000023 3.3e-73 280.0 426 49.3
Carub.0004s3072 Capsella rubella HOM05D005775 ORTHO05D000023 3.3e-73 280.0 433 44.1
arahy.Tifrunner.gnm1.ann1.84DKWJ Arachis hypogaea HOM05D005775 ORTHO05D000023 5.6e-73 279.3 426 50.2
Sed0008104 Sechium edule HOM05D005775 ORTHO05D000023 1.6e-72 277.7 423 51.8
AT2G48000 Arabidopsis thaliana HOM05D005775 ORTHO05D000023 1.1e-71 275.0 435 51.5
SGA_v2.0_scaffold172G39044 Striga asiatica HOM05D005775 ORTHO05D000023 1.4e-71 274.6 420 51.9
CARHR143390 Cardamine hirsuta HOM05D005775 ORTHO05D000023 7.6e-70 268.9 416 52.2
unitig_21.g20288 Utricularia gibba HOM05D005775 ORTHO05D000023 1.9e-68 264.2 435 50.3
Ca_02584_v3 Cicer arietinum L. HOM05D005775 ORTHO05D000023 4.2e-68 263.1 426 50.2
TPR.G16641 Trifolium pratense HOM05D005775 ORTHO05D000023 9.3e-68 261.9 437 47.8
TPR.G17547 Trifolium pratense HOM05D005775 ORTHO05D000023 3.5e-67 260.0 432 49.3
vmacro14952 Vaccinium macrocarpon HOM05D005775 ORTHO05D000023 6.0e-67 259.2 346 59.5
PSO541G6072 Papaver somniferum HOM05D005775 ORTHO05D000023 1.1e-65 255.0 419 50.8
Atru.BG.65.p Acer truncatum HOM05D005775 ORTHO05D000023 1.8e-63 247.7 347 57.6
HPP92_003166 Vanilla planifolia HOM05D005775 ORTHO05D000023 2.5e-60 237.3 432 43.3
Os05g0407900 Oryza sativa ssp. japonica HOM05D005775 ORTHO05D000023 1.6e-59 234.6 381 52.0
FvH4_2g24360 Fragaria vesca HOM05D005775 ORTHO05D000023 6.0e-59 232.6 426 48.1
Zm00001eb287820 Zea mays HOM05D005775 ORTHO05D000023 6.0e-59 232.6 381 53.0
PSO302G0009 Papaver somniferum HOM05D005775 ORTHO05D000023 1.9e-57 227.6 368 52.4
SEGI_28259 Sequoiadendron giganteum HOM05D005775 ORTHO05D000023 1.6e-56 224.6 437 45.3
BolC4t23514H Brassica oleracea HOM05D005775 ORTHO05D000023 2.2e-56 224.2 211 61.1
ClCG00G000230 Citrullus lanatus HOM05D005775 ORTHO05D000023 2.5e-49 200.7 182 55.5
PSO675G7470 Papaver somniferum HOM05D005775 ORTHO05D000023 5.9e-46 189.5 315 55.2
Nn5g27607 Nelumbo nucifera HOM05D005775 ORTHO05D000023 1.2e-43 181.8 288 56.9
MD11G1295800 Malus domestica HOM05D005775 ORTHO05D000023 1.7e-40 171.4 168 48.8
CDE10G1068 Ceratophyllum demersum HOM05D005775 ORTHO05D000023 4.2e-28 130.2 171 38.6
AL4G47600 Arabidopsis lyrata HOM05D005775 ORTHO05D000023 8.8e-26 122.5 149 45.0
MD11G1295900 Malus domestica HOM05D005775 ORTHO05D000023 2.8e-24 117.5 118 48.3
Actinidia00716 Actinidia chinensis HOM05D005775 ORTHO05D000023 4.1e-23 113.6 154 39.6
Actinidia24862 Actinidia chinensis HOM05D005775 ORTHO05D000023 1.0e-21 109.0 95 54.7
AagrBONN_evm.TU.Sc2ySwM_369.313 Anthoceros agrestis HOM05D005775 ORTHO05D000023 9.1e-15 85.9 368 37.0
BolC4t23515H Brassica oleracea HOM05D005775 ORTHO05D000023 2.8e-11 74.3 46 73.9
Pp3c8_4580 Physcomitrium patens HOM05D006414 ORTHO05D007780 8.9e-10 69.3 124 36.3
Pp3c1_37670 Physcomitrium patens HOM05D005775 ORTHO05D000023 1.2e-09 68.9 166 30.1
Duzib132G1008 Durio zibethinus HOM05D003056 ORTHO05D003422 9.8e-09 65.9 107 36.4
Mapoly0072s0009 Marchantia polymorpha HOM05D005775 ORTHO05D000023 1.3e-08 65.5 118 35.6
Sabra16G0186300 Salix brachista HOM05D003056 ORTHO05D003422 4.9e-08 63.5 120 31.7
ATR0697G092 Amborella trichopoda HOM05D008234 ORTHO05D010422 6.3e-08 63.2 330 20.0
Gohir.D02G205900 Gossypium hirsutum HOM05D003056 ORTHO05D003422 6.3e-08 63.2 143 30.8
Gorai.005G233300 Gossypium raimondii HOM05D003056 ORTHO05D003422 6.3e-08 63.2 143 30.8
Cpa.g.sc2736.1 Carica papaya HOM05D006414 ORTHO05D007780 8.3e-08 62.8 126 29.4
Manes.10G074400 Manihot esculenta HOM05D003056 ORTHO05D003422 1.4e-07 62.0 107 32.7
Prupe.8G139200 Prunus persica HOM05D003056 ORTHO05D003422 1.4e-07 62.0 120 32.5
COL.COLO4_32549 Corchorus olitorius HOM05D003056 ORTHO05D003422 2.4e-07 61.2 107 32.7
Thecc.02G112900 Theobroma cacao HOM05D003056 ORTHO05D003422 3.2e-07 60.8 107 31.8
FvH4_2g04590 Fragaria vesca HOM05D003056 ORTHO05D003422 4.1e-07 60.5 105 33.3
FAN15G3015 Fragaria x ananassa HOM05D003056 ORTHO05D003422 4.1e-07 60.5 105 33.3
FAN24G1521 Fragaria x ananassa HOM05D003056 ORTHO05D003422 4.1e-07 60.5 105 33.3
Gohir.A03G184400 Gossypium hirsutum HOM05D003056 ORTHO05D003422 7.0e-07 59.7 107 33.6
EL10Ac8g19354 Beta vulgaris HOM05D001121 ORTHO05D003422 9.2e-07 59.3 122 34.4
Ah.14g085500 Amaranthus hybridus HOM05D001121 ORTHO05D001256 1.2e-06 58.9 107 35.5
CiPaw.05G014700 Carya illinoinensis HOM05D003056 ORTHO05D003422 1.2e-06 58.9 110 34.5
Potri.001G297300 Populus trichocarpa HOM05D003056 ORTHO05D003422 1.2e-06 58.9 120 30.8
SEGI_11609 Sequoiadendron giganteum HOM05D008234 ORTHO05D010422 1.2e-06 58.9 121 28.9
Nitab4.5_0006715g0020 Nicotiana tabacum HOM05D005775 ORTHO05D000023 1.6e-06 58.5 46 58.7
Lalb_Chr21g0308181 Lupinus albus HOM05D003056 ORTHO05D003422 2.0e-06 58.2 185 28.6
GSVIVG01035674001 Vitis vinifera HOM05D008234 ORTHO05D010422 2.0e-06 58.2 181 27.6
TWI14G1022 Tripterygium wilfordii HOM05D003056 ORTHO05D003422 2.7e-06 57.8 144 29.2
Atru.chr5.2421 Acer truncatum HOM05D003056 ORTHO05D003422 3.5e-06 57.4 110 32.7
ClCG02G006650 Citrullus lanatus HOM05D003056 ORTHO05D003422 3.5e-06 57.4 123 30.9
THA.LOC104807228 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 4.5e-06 57.0 120 30.0
Migut.B00415 Erythranthe guttata HOM05D003056 ORTHO05D003422 7.8e-06 56.2 107 29.9
Nitab4.5_0006715g0010 Nicotiana tabacum HOM05D005775 ORTHO05D000023 7.8e-06 56.2 99 34.3
THA.LOC104819538 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 7.8e-06 56.2 154 28.6
TAR628G0528 Trochodendron aralioides HOM05D003056 ORTHO05D003422 7.8e-06 56.2 125 33.6


User provided reference genes

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