Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p13500 Brassica napus HOM05D004871 ORTHO05D005755 1.1e-260 902.9 482 100.0
BraA04t17009Z Brassica rapa HOM05D004871 ORTHO05D005755 1.8e-252 875.5 484 94.2
C04p47280 Brassica napus HOM05D004871 ORTHO05D005755 2.1e-240 835.5 484 93.8
BolC4t26328H Brassica oleracea HOM05D004871 ORTHO05D005755 2.1e-240 835.5 484 93.8
Sp7g01440 Schrenkiella parvula HOM05D004871 ORTHO05D005755 1.0e-207 726.9 495 81.0
Thhalv10028043m.g Eutrema salsugineum HOM05D004871 ORTHO05D005755 3.8e-202 708.4 492 78.9
BcaB06g27513 Brassica carinata HOM05D004871 ORTHO05D005755 5.4e-188 661.4 485 79.2
CARHR261520 Cardamine hirsuta HOM05D004871 ORTHO05D005755 5.1e-178 628.2 479 71.8
AT5G40470 Arabidopsis thaliana HOM05D004871 ORTHO05D005755 1.5e-169 600.1 496 68.3
Carub.0007s3511 Capsella rubella HOM05D004871 ORTHO05D005755 4.7e-168 595.1 486 67.9
AL7G49360 Arabidopsis lyrata HOM05D004871 ORTHO05D005755 1.2e-163 580.5 491 66.2
Aa31LG9G1150 Aethionema arabicum HOM05D004871 ORTHO05D005755 2.0e-142 510.0 496 57.7
THA.LOC104825322 Tarenaya hassleriana HOM05D004871 ORTHO05D005755 1.1e-129 467.6 477 58.1
COL.COLO4_29115 Corchorus olitorius HOM05D004871 ORTHO05D005755 1.5e-118 430.6 487 50.7
Thecc.04G017200 Theobroma cacao HOM05D004871 ORTHO05D005755 1.0e-114 417.9 468 51.7
Duzib147G1217 Durio zibethinus HOM05D004871 ORTHO05D005755 9.7e-113 411.4 481 50.3
MD17G1027100 Malus domestica HOM05D004871 ORTHO05D005755 1.3e-112 411.0 484 48.8
CiPaw.03G043700 Carya illinoinensis HOM05D004871 ORTHO05D005755 4.8e-112 409.1 479 49.5
QL02p074723 Quercus lobata HOM05D004871 ORTHO05D005755 1.8e-111 407.1 482 51.7
Ciclev10015079m.g Citrus clementina HOM05D004871 ORTHO05D005755 2.4e-111 406.8 483 48.7
Gorai.001G265000 Gossypium raimondii HOM05D004871 ORTHO05D005755 7.0e-111 405.2 475 48.6
Prupe.3G291600 Prunus persica HOM05D004871 ORTHO05D005755 9.1e-111 404.8 488 50.8
Atru.chr6.2393 Acer truncatum HOM05D004871 ORTHO05D005755 2.0e-110 403.7 485 50.5
Gohir.D07G229900 Gossypium hirsutum HOM05D004871 ORTHO05D005755 2.0e-110 403.7 475 48.4
Potri.017G069800 Populus trichocarpa HOM05D004871 ORTHO05D005755 5.9e-110 402.1 488 49.2
Cpa.g.sc130.82 Carica papaya HOM05D004871 ORTHO05D005755 3.8e-109 399.4 476 50.0
Haze_14739 Corylus avellana HOM05D004871 ORTHO05D005755 1.5e-108 397.5 481 50.5
Manes.15G150700 Manihot esculenta HOM05D004871 ORTHO05D005755 9.4e-108 394.8 483 48.7
TWI12G0316 Tripterygium wilfordii HOM05D004871 ORTHO05D005755 9.4e-108 394.8 478 48.3
RcHm_v2.0_Chr2g0172801 Rosa chinensis HOM05D004871 ORTHO05D005755 1.2e-107 394.4 483 47.6
Sabra17G0062100 Salix brachista HOM05D004871 ORTHO05D005755 1.2e-107 394.4 488 50.8
Hma1.2p1_2120F.1_g314420 Hydrangea macrophylla HOM05D004871 ORTHO05D005755 1.6e-107 394.0 474 48.3
CiPaw.04G028400 Carya illinoinensis HOM05D004871 ORTHO05D005755 2.1e-107 393.7 481 50.7
MD09G1027100 Malus domestica HOM05D004871 ORTHO05D005755 4.7e-107 392.5 493 50.7
Gohir.A05G355800 Gossypium hirsutum HOM05D004871 ORTHO05D005755 8.0e-107 391.7 481 47.2
Cfa007369 Carpinus fangiana HOM05D004871 ORTHO05D005755 5.2e-106 389.0 478 50.2
Gorai.012G064200 Gossypium raimondii HOM05D004871 ORTHO05D005755 2.0e-105 387.1 479 46.8
Gohir.D04G057500 Gossypium hirsutum HOM05D004871 ORTHO05D005755 3.3e-105 386.3 487 46.0
Eucgr.J02242 Eucalyptus grandis HOM05D004871 ORTHO05D005755 1.3e-104 384.4 485 49.5
Lj1g0007322 Lotus japonicus HOM05D004871 ORTHO05D005755 6.3e-104 382.1 484 49.4
Nn3g16731 Nelumbo nucifera HOM05D004871 ORTHO05D005755 1.4e-103 380.9 495 46.3
Nn3g16736 Nelumbo nucifera HOM05D004871 ORTHO05D005755 1.4e-103 380.9 495 46.3
PGR083G0754 Punica granatum HOM05D004871 ORTHO05D005755 9.1e-103 378.3 483 47.4
CANSAT64G1143 Cannabis sativa HOM05D004871 ORTHO05D005755 3.8e-101 372.9 486 44.2
FAN14G1702 Fragaria x ananassa HOM05D004871 ORTHO05D005755 6.1e-99 365.5 422 49.3
FvH4_6g51200 Fragaria vesca HOM05D004871 ORTHO05D005755 4.0e-98 362.8 419 49.4
FAN02G2556 Fragaria x ananassa HOM05D004871 ORTHO05D005755 2.0e-97 360.5 419 49.2
Peaxi162Scf00129g00168 Petunia axillaris HOM05D004871 ORTHO05D005755 2.0e-97 360.5 479 46.8
Ca_23007_v3 Cicer arietinum L. HOM05D004871 ORTHO05D005755 3.4e-97 359.8 417 49.9
CSS0032397 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 9.7e-97 358.2 478 49.0
Lalb_Chr24g0402861 Lupinus albus HOM05D004871 ORTHO05D005755 2.8e-96 356.7 489 48.3
PSO063G1038 Papaver somniferum HOM05D004871 ORTHO05D005755 2.8e-96 356.7 494 46.6
CAN.G473.11 Capsicum annuum HOM05D004871 ORTHO05D005755 3.7e-96 356.3 477 46.5
Phvul.008G154600 Phaseolus vulgaris HOM05D004871 ORTHO05D005755 6.3e-96 355.5 412 51.9
Medtr7g033720 Medicago truncatula HOM05D004871 ORTHO05D005755 1.1e-95 354.8 477 48.8
Sopen02g031150 Solanum pennellii HOM05D004871 ORTHO05D005755 1.1e-95 354.8 473 46.9
Lju41C42T3 Lonicera japonica HOM05D004871 ORTHO05D005755 1.4e-95 354.4 428 49.1
PGSC0003DMG400012633 Solanum tuberosum HOM05D004871 ORTHO05D005755 1.4e-95 354.4 473 46.7
Lalb_Chr14g0362771 Lupinus albus HOM05D004871 ORTHO05D005755 1.8e-95 354.0 477 48.6
Eucgr.H01852 Eucalyptus grandis HOM05D004871 ORTHO05D005755 2.4e-95 353.6 484 47.3
ClCG10G013890 Citrullus lanatus HOM05D004871 ORTHO05D005755 9.1e-95 351.7 480 43.1
PSO832G2649 Papaver somniferum HOM05D004871 ORTHO05D005755 2.0e-94 350.5 494 45.3
MSTRG.24039 Avicennia marina HOM05D004871 ORTHO05D005755 1.5e-92 344.4 468 44.2
DCAR_021722 Daucus carota HOM05D004871 ORTHO05D005755 5.5e-92 342.4 479 44.1
CsaV3_3G042800 Cucumis sativus L. HOM05D004871 ORTHO05D005755 1.2e-91 341.3 478 42.9
Oeu054623.1 Olea europaea HOM05D004871 ORTHO05D005755 1.4e-90 337.8 479 43.0
Sed0007166 Sechium edule HOM05D004871 ORTHO05D005755 2.3e-90 337.0 479 42.4
TAR622G0125 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.3e-90 337.0 427 47.8
Cc07_g01680 Coffea canephora HOM05D004871 ORTHO05D005755 4.0e-90 336.3 472 44.9
MELO3C026581.2 Cucumis melo HOM05D004871 ORTHO05D005755 8.8e-90 335.1 483 41.6
Glyma.19G068600 Glycine max HOM05D004871 ORTHO05D005755 1.2e-89 334.7 477 47.8
Eucgr.L00043 Eucalyptus grandis HOM05D004871 ORTHO05D005755 1.3e-88 331.3 487 44.4
Migut.H00077 Erythranthe guttata HOM05D004871 ORTHO05D005755 3.1e-87 326.6 484 44.8
Rhsim08G0050600 Rhododendron simsii HOM05D004871 ORTHO05D005755 9.1e-87 325.1 500 44.6
Dinv35106 Davidia involucrata HOM05D004871 ORTHO05D005755 2.0e-86 323.9 474 46.0
Sc16g0004350 Simmondsia chinensis HOM05D004871 ORTHO05D005755 2.0e-86 323.9 485 45.6
SalBow2G2412 Salvia bowleyana HOM05D004871 ORTHO05D005755 1.5e-84 317.8 488 44.1
Lj7C599T13 Lonicera japonica HOM05D004871 ORTHO05D005755 5.5e-84 315.8 492 43.3
TAR371G0422 Trochodendron aralioides HOM05D004871 ORTHO05D005755 7.2e-84 315.5 475 45.5
SGA_v2.0_scaffold18G08277 Striga asiatica HOM05D004871 ORTHO05D005755 1.2e-83 314.7 482 42.7
TAR371G1027 Trochodendron aralioides HOM05D004871 ORTHO05D005755 4.7e-83 312.8 479 44.9
Rhsim08G0048900 Rhododendron simsii HOM05D004871 ORTHO05D005755 8.0e-83 312.0 481 43.7
Aqoxy5G03783 Aquilegia oxysepala HOM05D004871 ORTHO05D005755 2.3e-82 310.5 494 41.3
Peaxi162Scf00129g01652 Petunia axillaris HOM05D004871 ORTHO05D005755 2.3e-82 310.5 403 47.4
Rhsim08G0050100 Rhododendron simsii HOM05D004871 ORTHO05D005755 5.2e-82 309.3 479 43.8
TAR371G0152 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.2e-81 308.1 483 44.5
Oeu018139.1 Olea europaea HOM05D004871 ORTHO05D005755 3.4e-81 306.6 481 41.4
vmacro18283 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 3.4e-81 306.6 477 40.7
vmacro23390 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 9.8e-81 305.1 477 40.5
Rhsim08G0049400 Rhododendron simsii HOM05D004871 ORTHO05D005755 4.9e-80 302.8 433 46.7
FAN05G1656 Fragaria x ananassa HOM05D004871 ORTHO05D005755 2.4e-79 300.4 377 47.2
Rhsim08G0049600 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.4e-79 300.4 484 44.0
HanXRQChr17g0548491 Helianthus annuus HOM05D004871 ORTHO05D005755 9.2e-79 298.5 484 39.0
vmacro23391 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 9.2e-79 298.5 480 42.9
ATR0686G244 Amborella trichopoda HOM05D004871 ORTHO05D005755 2.7e-78 297.0 475 43.2
Lsat_1_v5_gn_0_47681 Lactuca sativa HOM05D004871 ORTHO05D005755 4.5e-78 296.2 477 39.4
SalBow1G4779 Salvia bowleyana HOM05D004871 ORTHO05D005755 2.9e-77 293.5 481 40.3
Glyma.16G071200 Glycine max HOM05D004871 ORTHO05D005755 8.6e-77 292.0 471 43.1
Gohir.A07G223200 Gossypium hirsutum HOM05D004871 ORTHO05D005755 1.1e-76 291.6 475 39.8
Atru.chr6.2392 Acer truncatum HOM05D004871 ORTHO05D005755 1.2e-75 288.1 290 52.8
CDE08G0710 Ceratophyllum demersum HOM05D004871 ORTHO05D005755 2.8e-75 287.0 423 42.8
Nitab4.5_0002468g0010 Nicotiana tabacum HOM05D004871 ORTHO05D005755 3.6e-75 286.6 332 47.6
Nitab4.5_0003318g0120 Nicotiana tabacum HOM05D004871 ORTHO05D005755 3.4e-73 280.0 324 47.5
HPP92_009906 Vanilla planifolia HOM05D004871 ORTHO05D005755 3.4e-73 280.0 502 40.8
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 1.3e-72 278.1 303 49.8
Rhsim08G0050400 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.0e-69 266.9 471 43.5
Rhsim08G0049300 Rhododendron simsii HOM05D004871 ORTHO05D005755 6.6e-69 265.8 484 37.4
Zm00001eb246170 Zea mays HOM05D004871 ORTHO05D005755 3.3e-68 263.5 488 37.5
Rhsim08G0050200 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.4e-66 258.1 481 40.1
unitig_899.g14805 Utricularia gibba HOM05D004871 ORTHO05D005755 4.0e-66 256.5 416 41.3
vmacro18285 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.2e-65 255.0 489 40.5
vmacro23392 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.2e-65 255.0 489 40.5
Psat3g166880 Pisum sativum HOM05D004871 ORTHO05D005755 4.4e-65 253.1 287 51.2
GSVIVG01032408001 Vitis vinifera HOM05D004871 ORTHO05D005755 1.3e-64 251.5 279 52.0
Rhsim08G0050500 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.2e-64 250.8 482 41.1
HanXRQChr15g0475301 Helianthus annuus HOM05D004871 ORTHO05D005755 6.4e-64 249.2 476 35.5
Rhsim08G0049200 Rhododendron simsii HOM05D004871 ORTHO05D005755 5.4e-63 246.1 286 51.0
VMungo1383G0924 Vigna mungo HOM05D004871 ORTHO05D005755 2.1e-62 244.2 274 54.4
TAR633G0371 Trochodendron aralioides HOM05D004871 ORTHO05D005755 6.0e-62 242.7 328 43.6
vmacro18284 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.9e-60 237.7 355 44.2
SMO298G0062 Selaginella moellendorffii HOM05D004871 ORTHO05D005755 3.6e-59 233.4 473 35.5
Rhsim08G0049900 Rhododendron simsii HOM05D004871 ORTHO05D005755 6.8e-58 229.2 481 37.6
Rhsim08G0050000 Rhododendron simsii HOM05D004871 ORTHO05D005755 6.8e-58 229.2 480 36.7
BcaB07g32983 Brassica carinata HOM05D004871 ORTHO05D005755 6.4e-56 222.6 126 88.1
FAN09G0732 Fragaria x ananassa HOM05D000795 ORTHO05D005755 7.8e-54 215.7 185 57.3
Rhsim08G0049500 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.6e-51 208.0 297 43.1
Actinidia35771 Actinidia chinensis HOM05D004871 ORTHO05D005755 5.2e-50 203.0 333 41.4
Nn1g05920 Nelumbo nucifera HOM05D004871 ORTHO05D005755 5.2e-50 203.0 263 46.0
Peaxi162Scf00129g01633 Petunia axillaris HOM05D004871 ORTHO05D005755 2.0e-49 201.1 206 53.4
Cc00_g26710 Coffea canephora HOM05D004871 ORTHO05D005755 8.1e-43 179.1 303 40.9
TAR371G0343 Trochodendron aralioides HOM05D004871 ORTHO05D005755 7.1e-39 166.0 178 49.4
Rhsim08G0050300 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.0e-37 162.2 239 41.0
TPR.G1076 Trifolium pratense HOM05D004871 ORTHO05D005755 3.9e-37 160.2 419 32.0
TAR374G1232 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.2e-33 148.7 155 53.5
TAR629G3424 Trochodendron aralioides HOM05D004871 ORTHO05D005755 5.8e-33 146.4 239 36.4
ATR0589G064 Amborella trichopoda HOM05D004871 ORTHO05D005755 1.4e-31 141.7 328 37.5
CSS0034270 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.8e-29 134.8 162 53.7
FAN05G3698 Fragaria x ananassa HOM05D004871 ORTHO05D005755 3.7e-27 127.1 102 60.8
FAN27G1866 Fragaria x ananassa HOM05D004871 ORTHO05D005755 4.0e-26 123.6 188 38.8
ATR0762G040 Amborella trichopoda HOM05D004871 ORTHO05D005755 2.0e-25 121.3 276 37.3
FAN09G0037 Fragaria x ananassa HOM05D004871 ORTHO05D005755 7.1e-23 112.8 118 51.7
CSS0039002 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.1e-20 105.5 87 58.6
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.6e-19 101.7 145 40.0
Solyc02g086440.4 Solanum lycopersicum HOM05D004871 ORTHO05D005755 4.8e-19 100.1 203 40.4
Rhsim08G0180400 Rhododendron simsii HOM05D001576 ORTHO05D000401 2.4e-18 97.8 109 45.9
HanXRQChr07g0188231 Helianthus annuus HOM05D004871 ORTHO05D005755 4.5e-17 93.6 151 35.8
Nitab4.5_0007441g0020 Nicotiana tabacum HOM05D004871 ORTHO05D005755 4.5e-17 93.6 79 53.2
CSS0033026 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 7.2e-15 86.3 72 56.9
TAR314G0001 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.1e-14 84.7 113 42.5
FAN14G0631 Fragaria x ananassa HOM05D004871 ORTHO05D005755 3.9e-13 80.5 72 56.9
Sc23g0005220 Simmondsia chinensis HOM05D002813 ORTHO05D003203 2.0e-09 68.2 290 27.2
AUR62011479 Chenopodium quinoa HOM05D001219 ORTHO05D001017 1.0e-08 65.9 418 24.4
Nitab4.5_0000028g0350 Nicotiana tabacum HOM05D001818 ORTHO05D001780 1.3e-08 65.5 195 30.3
Gohir.A05G046700 Gossypium hirsutum HOM05D002813 ORTHO05D003203 2.2e-08 64.7 279 25.8
BcaB01g01386 Brassica carinata HOM05D004106 ORTHO05D005755 6.5e-08 63.2 40 75.0
TPR.G29931 Trifolium pratense HOM05D001219 ORTHO05D001017 6.5e-08 63.2 284 24.3
Gohir.D05G048500 Gossypium hirsutum HOM05D002813 ORTHO05D003203 1.1e-07 62.4 279 25.1
TAR314G0006 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.4e-07 62.0 82 41.5
Gorai.009G049800 Gossypium raimondii HOM05D002813 ORTHO05D003203 1.9e-07 61.6 279 24.7
Aa31LG9G1950 Aethionema arabicum HOM05D002762 ORTHO05D004643 4.2e-07 60.5 274 29.6
A02p27120 Brassica napus HOM05D004871 ORTHO05D098505 5.5e-07 60.1 42 69.0
arahy.Tifrunner.gnm1.ann1.L75CTN Arachis hypogaea HOM05D002762 ORTHO05D004643 7.2e-07 59.7 268 26.9
Prupe.1G147900 Prunus persica HOM05D002762 ORTHO05D004643 9.4e-07 59.3 263 26.6
HPP92_021034 Vanilla planifolia HOM05D002503 ORTHO05D002810 9.4e-07 59.3 402 24.1
VMungo0331G0655 Vigna mungo HOM05D001219 ORTHO05D001017 9.4e-07 59.3 218 28.9
MSTRG.9106 Avicennia marina HOM05D002813 ORTHO05D003203 1.6e-06 58.5 195 30.8
THA.LOC104802549 Tarenaya hassleriana HOM05D002762 ORTHO05D004643 2.7e-06 57.8 288 25.3
Ca_00594_v3 Cicer arietinum L. HOM05D002762 ORTHO05D004643 3.6e-06 57.4 263 26.6
Psat3g054200 Pisum sativum HOM05D001219 ORTHO05D001017 4.6e-06 57.0 315 25.1
Manes.03G187500 Manihot esculenta HOM05D002762 ORTHO05D004643 7.9e-06 56.2 294 27.2
Nitab4.5_0002295g0030 Nicotiana tabacum HOM05D002762 ORTHO05D004643 7.9e-06 56.2 268 28.4


User provided reference genes

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