Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p13090 Brassica napus HOM05D007469 ORTHO05D003360 5.1e-126 454.9 319 100.0
BraA04t16968Z Brassica rapa HOM05D007469 ORTHO05D003360 6.9e-115 417.9 319 92.8
C04p46840 Brassica napus HOM05D007469 ORTHO05D003360 7.1e-112 407.9 319 93.4
BolC4t26272H Brassica oleracea HOM05D007469 ORTHO05D003360 7.1e-112 407.9 319 93.4
BcaB06g27455 Brassica carinata HOM05D007469 ORTHO05D003360 7.3e-109 397.9 319 89.3
Sp7g01840 Schrenkiella parvula HOM05D007469 ORTHO05D003360 1.1e-99 367.5 319 87.5
CARHR261930 Cardamine hirsuta HOM05D007469 ORTHO05D003360 3.8e-89 332.4 320 82.2
Thhalv10027842m.g Eutrema salsugineum HOM05D007469 ORTHO05D003360 1.3e-84 317.4 296 84.8
AT5G40160 Arabidopsis thaliana HOM05D007469 ORTHO05D003360 1.2e-82 310.8 322 78.0
AL7G49850 Arabidopsis lyrata HOM05D007469 ORTHO05D003360 2.7e-79 299.7 321 75.7
Carub.0007s3552 Capsella rubella HOM05D007469 ORTHO05D003360 5.7e-77 292.0 323 75.9
Aa31LG9G1510 Aethionema arabicum HOM05D007469 ORTHO05D003360 4.4e-69 265.8 333 57.7
THA.LOC104805414 Tarenaya hassleriana HOM05D007469 ORTHO05D003360 1.1e-61 241.1 326 65.6
Atru.chr8.2427 Acer truncatum HOM05D007469 ORTHO05D003360 9.2e-43 178.3 290 64.8
Ciclev10013529m.g Citrus clementina HOM05D007469 ORTHO05D003360 4.5e-42 176.0 296 61.5
Oeu047333.1 Olea europaea HOM05D007469 ORTHO05D003360 6.6e-41 172.2 264 67.8
Thecc.04G004300 Theobroma cacao HOM05D007469 ORTHO05D003360 2.5e-40 170.2 256 67.6
Lj7C409T15 Lonicera japonica HOM05D007469 ORTHO05D003360 1.0e-38 164.9 322 54.3
Dinv35031 Davidia involucrata HOM05D000028 ORTHO05D000390 5.2e-38 162.5 162 60.5
CiPaw.03G035300 Carya illinoinensis HOM05D007469 ORTHO05D003360 6.8e-38 162.2 261 67.4
Manes.15G180348 Manihot esculenta HOM05D007469 ORTHO05D003360 1.2e-37 161.4 329 54.4
Aqoxy3G00905 Aquilegia oxysepala HOM05D007469 ORTHO05D003360 2.0e-37 160.6 243 70.0
Sabra16G0184600 Salix brachista HOM05D007469 ORTHO05D003360 3.4e-37 159.8 276 59.1
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 3.4e-37 159.8 279 60.9
Duzib264G1016 Durio zibethinus HOM05D007469 ORTHO05D003360 2.2e-36 157.1 273 61.9
Gohir.D07G225500 Gossypium hirsutum HOM05D007469 ORTHO05D003360 2.9e-36 156.8 255 67.1
Gohir.A07G218400 Gossypium hirsutum HOM05D007469 ORTHO05D003360 6.4e-36 155.6 257 66.9
Hma1.2p1_0697F.1_g204960 Hydrangea macrophylla HOM05D007469 ORTHO05D003360 2.0e-34 150.6 233 70.8
arahy.Tifrunner.gnm1.ann1.5026CX Arachis hypogaea HOM05D007469 ORTHO05D003360 3.5e-34 149.8 257 60.3
Gorai.001G259900 Gossypium raimondii HOM05D007469 ORTHO05D003360 3.5e-34 149.8 256 66.8
MELO3C021518.2 Cucumis melo HOM05D007469 ORTHO05D003360 4.6e-34 149.4 333 53.8
Cc02_g31090 Coffea canephora HOM05D007469 ORTHO05D003360 6.6e-33 145.6 275 62.2
arahy.Tifrunner.gnm1.ann1.RR2C2G Arachis hypogaea HOM05D007469 ORTHO05D003360 8.6e-33 145.2 264 59.5
Peaxi162Scf00290g00012 Petunia axillaris HOM05D007469 ORTHO05D003360 1.9e-32 144.1 259 65.3
QL02p077481 Quercus lobata HOM05D007469 ORTHO05D003360 3.3e-32 143.3 324 56.5
GSVIVG01032525001 Vitis vinifera HOM05D007469 ORTHO05D003360 3.3e-32 143.3 225 69.8
MSTRG.15502 Avicennia marina HOM05D007469 ORTHO05D003360 1.6e-31 141.0 264 62.9
unitig_0.g2798 Utricularia gibba HOM05D007469 ORTHO05D003360 3.6e-31 139.8 251 65.7
Eucgr.J02176 Eucalyptus grandis HOM05D007469 ORTHO05D003360 4.7e-31 139.4 173 50.3
EL10Ac8g18402 Beta vulgaris HOM05D007469 ORTHO05D003360 8.0e-31 138.7 150 56.0
CsaV3_5G037380 Cucumis sativus L. HOM05D007469 ORTHO05D003360 1.4e-30 137.9 325 53.2
PGR083G2689 Punica granatum HOM05D007469 ORTHO05D003360 1.8e-30 137.5 196 46.4
Hund20037 Selenicereus undatus HOM05D007469 ORTHO05D009499 1.8e-30 137.5 149 57.7
Dinv33523 Davidia involucrata HOM05D007469 ORTHO05D003360 3.1e-30 136.7 136 59.6
CANSAT64G0136 Cannabis sativa HOM05D007469 ORTHO05D003360 8.9e-30 135.2 278 60.1
CANSAT64G2834 Cannabis sativa HOM05D007469 ORTHO05D003360 1.5e-29 134.4 322 53.7
Rhsim10G0026300 Rhododendron simsii HOM05D007469 ORTHO05D003360 2.0e-29 134.0 345 53.3
Psat0s5166g0040 Pisum sativum HOM05D007469 ORTHO05D003360 5.8e-29 132.5 265 60.4
Haze_14632 Corylus avellana HOM05D007469 ORTHO05D003360 9.8e-29 131.7 216 44.9
Sed0015996 Sechium edule HOM05D007469 ORTHO05D003360 9.8e-29 131.7 288 60.4
Prupe.3G132600 Prunus persica HOM05D007469 ORTHO05D003360 2.2e-28 130.6 280 58.6
Nn4g22877 Nelumbo nucifera HOM05D007469 ORTHO05D003360 3.7e-28 129.8 300 56.7
Sc18g0006210 Simmondsia chinensis HOM05D007469 ORTHO05D003360 4.9e-28 129.4 262 37.0
TPR.G666 Trifolium pratense HOM05D007469 ORTHO05D003360 6.4e-28 129.0 281 56.9
Potri.001G295200 Populus trichocarpa HOM05D007469 ORTHO05D003360 1.1e-27 128.3 285 55.8
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 7.0e-27 125.6 82 76.8
SGA_v2.0_scaffold30G12492 Striga asiatica HOM05D007469 ORTHO05D003360 1.2e-26 124.8 154 52.6
TAR371G0800 Trochodendron aralioides HOM05D007469 ORTHO05D003360 1.2e-26 124.8 274 56.2
Lalb_Chr08g0233251 Lupinus albus HOM05D007469 ORTHO05D003360 2.0e-26 124.0 251 61.8
ClCG00G005290 Citrullus lanatus HOM05D007469 ORTHO05D003360 2.7e-26 123.6 178 47.8
ClCG09G018690 Citrullus lanatus HOM05D007469 ORTHO05D003360 2.7e-26 123.6 178 47.8
ClCG09G018760 Citrullus lanatus HOM05D007469 ORTHO05D003360 2.7e-26 123.6 178 47.8
CDE10G0535 Ceratophyllum demersum HOM05D007469 ORTHO05D003360 4.6e-26 122.9 266 58.3
HanXRQChr15g0488381 Helianthus annuus HOM05D007469 ORTHO05D003360 6.0e-26 122.5 125 62.4
RcHm_v2.0_Chr7g0226491 Rosa chinensis HOM05D007469 ORTHO05D003360 6.0e-26 122.5 275 58.5
Cfa007462 Carpinus fangiana HOM05D007469 ORTHO05D003360 7.8e-26 122.1 215 42.8
FvH4_5g31250 Fragaria vesca HOM05D007469 ORTHO05D003360 1.7e-25 120.9 275 58.5
DCAR_013974 Daucus carota HOM05D007469 ORTHO05D003360 2.3e-25 120.6 251 62.9
Medtr2g048680 Medicago truncatula HOM05D007469 ORTHO05D003360 6.6e-25 119.0 198 44.4
Actinidia06038 Actinidia chinensis HOM05D007469 ORTHO05D003360 1.5e-24 117.9 277 57.4
SalBow7G0002 Salvia bowleyana HOM05D007469 ORTHO05D003360 2.5e-24 117.1 176 46.6
Lsat_1_v5_gn_4_181880 Lactuca sativa HOM05D007469 ORTHO05D003360 3.3e-24 116.7 125 59.2
ATR1159G025 Amborella trichopoda HOM05D007469 ORTHO05D003360 4.3e-24 116.3 275 54.5
Ah.10g030590 Amaranthus hybridus HOM05D007469 ORTHO05D003360 5.6e-24 115.9 145 50.3
CAN.G824.9 Capsicum annuum HOM05D007469 ORTHO05D003360 9.5e-24 115.2 252 61.1
Glyma.11G211316 Glycine max HOM05D007469 ORTHO05D003360 9.5e-24 115.2 251 62.2
Cpa.g.sc88.45 Carica papaya HOM05D007469 ORTHO05D003360 1.6e-23 114.4 191 73.3
Migut.K01363 Erythranthe guttata HOM05D007469 ORTHO05D003360 2.1e-23 114.0 210 66.7
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 3.6e-23 113.2 160 48.8
CSS0038198 Camellia sinensis var. sinensis HOM05D007469 ORTHO05D003360 8.1e-23 112.1 289 54.0
Ca_02547_v3 Cicer arietinum L. HOM05D007469 ORTHO05D003360 8.1e-23 112.1 258 58.9
Lj1g0016351 Lotus japonicus HOM05D007469 ORTHO05D003360 1.1e-22 111.7 273 57.9
Nitab4.5_0004567g0040 Nicotiana tabacum HOM05D007469 ORTHO05D003360 1.1e-22 111.7 279 57.3
AUR62021431 Chenopodium quinoa HOM05D007469 ORTHO05D003360 2.3e-22 110.5 148 49.3
Nitab4.5_0001969g0030 Nicotiana tabacum HOM05D007469 ORTHO05D003360 3.1e-22 110.2 287 55.7
Glyma.18G044300 Glycine max HOM05D007469 ORTHO05D003360 4.4e-21 106.3 250 60.4
VMungo0540G0432 Vigna mungo HOM05D007469 ORTHO05D003360 4.4e-21 106.3 245 61.2
Phvul.006G086600 Phaseolus vulgaris HOM05D007469 ORTHO05D003360 1.3e-20 104.8 246 61.0
HPP92_010841 Vanilla planifolia HOM05D007469 ORTHO05D003360 1.7e-20 104.4 130 51.5
CSS0050487 Camellia sinensis var. sinensis HOM05D007469 ORTHO05D003360 3.7e-20 103.2 116 55.2
Rhsim10G0026800 Rhododendron simsii HOM05D007469 ORTHO05D003360 1.4e-19 101.3 185 44.3
ECA232G1734 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.2e-19 100.1 127 54.3
Zm00001eb208780 Zea mays HOM05D007469 ORTHO05D003360 7.1e-19 99.0 248 56.9
MBI14_g12788_MAGBIO Magnolia biondii HOM05D007469 ORTHO05D003360 1.0e-17 95.1 253 58.1
Solyc09g009290.3 Solanum lycopersicum HOM05D007469 ORTHO05D003360 1.0e-17 95.1 140 47.1
SEGI_15817 Sequoiadendron giganteum HOM05D005999 ORTHO05D003360 2.3e-17 94.0 111 46.8
Sopen09g004030 Solanum pennellii HOM05D007469 ORTHO05D003360 1.5e-16 91.3 140 46.4
Actinidia36064 Actinidia chinensis HOM05D007469 ORTHO05D003360 3.3e-16 90.1 279 52.3
PSO161G0131 Papaver somniferum HOM05D007469 ORTHO05D003360 2.8e-15 87.0 185 39.5
MD05G1026500 Malus domestica HOM05D007469 ORTHO05D003360 2.6e-13 80.5 185 39.5
vmacro05796 Vaccinium macrocarpon HOM05D007469 ORTHO05D003360 1.1e-11 75.1 160 74.4
arahy.Tifrunner.gnm1.ann1.74V199 Arachis hypogaea HOM05D005999 ORTHO05D003360 1.9e-11 74.3 77 46.8
arahy.Tifrunner.gnm1.ann1.JK0YGC Arachis hypogaea HOM05D005999 ORTHO05D003360 1.9e-11 74.3 77 46.8
Lalb_Chr05g0212151 Lupinus albus HOM05D005999 ORTHO05D003360 1.9e-11 74.3 78 48.7
GSVIVG01005198001 Vitis vinifera HOM05D005999 ORTHO05D003360 4.1e-11 73.2 76 48.7
MBI05_g32278_MAGBIO Magnolia biondii HOM05D005999 ORTHO05D003360 7.1e-11 72.4 76 44.7
Atru.chr3.914 Acer truncatum HOM05D005999 ORTHO05D003360 9.2e-11 72.0 91 44.0
Atru.chr3.919 Acer truncatum HOM05D005999 ORTHO05D003360 9.2e-11 72.0 91 44.0
Lj2g0014093 Lotus japonicus HOM05D005999 ORTHO05D003360 9.2e-11 72.0 78 44.9
CANSAT01G1435 Cannabis sativa HOM05D005999 ORTHO05D003360 1.2e-10 71.6 77 44.2
Ciclev10025620m.g Citrus clementina HOM05D005999 ORTHO05D003360 1.2e-10 71.6 76 46.1
VMungo1215G1128 Vigna mungo HOM05D005999 ORTHO05D003360 1.6e-10 71.2 76 43.4
Thhalv10004296m.g Eutrema salsugineum HOM05D005999 ORTHO05D003360 2.7e-10 70.5 78 46.2
CARHR281700 Cardamine hirsuta HOM05D005999 ORTHO05D003360 3.5e-10 70.1 78 46.2
BcaC04g23109 Brassica carinata HOM05D005999 ORTHO05D003360 6.0e-10 69.3 78 44.9
BolC9t54096H Brassica oleracea HOM05D005999 ORTHO05D003360 6.0e-10 69.3 78 44.9
Sp2g30630 Schrenkiella parvula HOM05D005999 ORTHO05D003360 1.0e-09 68.6 78 44.9
Zm00001eb170850 Zea mays HOM05D005999 ORTHO05D003360 1.0e-09 68.6 87 39.1
C09p12060 Brassica napus HOM05D005999 ORTHO05D003360 1.3e-09 68.2 78 44.9
PSO170G6629 Papaver somniferum HOM05D005999 ORTHO05D003360 1.3e-09 68.2 78 46.2
PSO210G1231 Papaver somniferum HOM05D005999 ORTHO05D003360 1.3e-09 68.2 78 46.2
Glyma.11G081800 Glycine max HOM05D005999 ORTHO05D003360 1.7e-09 67.8 72 43.1
THA.LOC104826498 Tarenaya hassleriana HOM05D005999 ORTHO05D003360 1.7e-09 67.8 102 37.3
BcaB04g20127 Brassica carinata HOM05D005999 ORTHO05D003360 2.3e-09 67.4 105 38.1
A09p10170 Brassica napus HOM05D005999 ORTHO05D003360 2.3e-09 67.4 78 43.6
BraA09t36663Z Brassica rapa HOM05D005999 ORTHO05D003360 2.3e-09 67.4 78 43.6
CANSAT54G2046 Cannabis sativa HOM05D005999 ORTHO05D003360 3.0e-09 67.0 80 42.5
Phvul.002G104000 Phaseolus vulgaris HOM05D005999 ORTHO05D003360 3.0e-09 67.0 76 43.4
ECA232G4368 Erigeron canadensis HOM05D005999 ORTHO05D003360 3.9e-09 66.6 90 35.6
Zm00001eb211570 Zea mays HOM05D005999 ORTHO05D003360 3.9e-09 66.6 87 37.9
Zm00001eb242830 Zea mays HOM05D005999 ORTHO05D003360 3.9e-09 66.6 87 37.9
Carub.0008s2845 Capsella rubella HOM05D005999 ORTHO05D003360 5.1e-09 66.2 78 43.6
Nn6g31889 Nelumbo nucifera HOM05D005999 ORTHO05D003360 5.1e-09 66.2 76 44.7
Manes.01G151300 Manihot esculenta HOM05D005999 ORTHO05D003360 6.6e-09 65.9 90 42.2
AL8G45550 Arabidopsis lyrata HOM05D005999 ORTHO05D003360 8.6e-09 65.5 104 36.5
Lalb_Chr16g0377331 Lupinus albus HOM05D005999 ORTHO05D003360 8.6e-09 65.5 147 36.7
Oeu020651.1 Olea europaea HOM05D005999 ORTHO05D003360 8.6e-09 65.5 76 40.8
COL.COLO4_22501 Corchorus olitorius HOM05D005999 ORTHO05D003360 1.1e-08 65.1 78 42.3
Nitab4.5_0000188g0250 Nicotiana tabacum HOM05D005999 ORTHO05D003360 1.1e-08 65.1 91 39.6
Os03g0135600 Oryza sativa ssp. japonica HOM05D005999 ORTHO05D003360 1.1e-08 65.1 73 38.4
Sopen02g012860 Solanum pennellii HOM05D005999 ORTHO05D003360 1.1e-08 65.1 91 39.6
PGSC0003DMG400002708 Solanum tuberosum HOM05D007469 ORTHO05D003360 1.1e-08 65.1 132 40.9
Lj6A806T47 Lonicera japonica HOM05D005999 ORTHO05D003360 1.9e-08 64.3 76 40.8
Migut.L00736 Erythranthe guttata HOM05D005999 ORTHO05D003360 2.5e-08 63.9 74 41.9
Solyc02g061820.4 Solanum lycopersicum HOM05D005999 ORTHO05D003360 2.5e-08 63.9 91 38.5
PGSC0003DMG400008679 Solanum tuberosum HOM05D005999 ORTHO05D003360 2.5e-08 63.9 91 39.6
SalBow5G5732 Salvia bowleyana HOM05D005999 ORTHO05D003360 4.3e-08 63.2 78 37.2
CsaV3_6G047550 Cucumis sativus L. HOM05D005999 ORTHO05D003360 5.6e-08 62.8 78 41.0
TAR628G0133 Trochodendron aralioides HOM05D005999 ORTHO05D003360 5.6e-08 62.8 74 45.9
Sc16g0001790 Simmondsia chinensis HOM05D005999 ORTHO05D003360 7.3e-08 62.4 81 39.5
HPP92_001740 Vanilla planifolia HOM05D005999 ORTHO05D003360 7.3e-08 62.4 86 37.2
CAN.G865.12 Capsicum annuum HOM05D005999 ORTHO05D003360 9.6e-08 62.0 78 41.0
ATR0661G352 Amborella trichopoda HOM05D005999 ORTHO05D003360 1.2e-07 61.6 74 41.9
MSTRG.3620 Avicennia marina HOM05D005999 ORTHO05D003360 1.2e-07 61.6 74 39.2
A04p13070 Brassica napus HOM05D007469 ORTHO05D026517 1.2e-07 61.6 29 96.6
Glyma.01G161900 Glycine max HOM05D005999 ORTHO05D003360 1.2e-07 61.6 65 46.2
Zm00001eb002820 Zea mays HOM05D005999 ORTHO05D003360 1.2e-07 61.6 94 34.0
Cpa.g.sc6.319 Carica papaya HOM05D005999 ORTHO05D003360 1.6e-07 61.2 102 35.3
DCAR_011582 Daucus carota HOM05D005999 ORTHO05D003360 1.6e-07 61.2 76 38.2
Dinv08545 Davidia involucrata HOM05D005999 ORTHO05D003360 1.6e-07 61.2 87 39.1
Gorai.003G005300 Gossypium raimondii HOM05D005999 ORTHO05D003360 1.6e-07 61.2 135 32.6
Medtr5g022050 Medicago truncatula HOM05D005999 ORTHO05D003360 1.6e-07 61.2 78 43.6
Sed0006391 Sechium edule HOM05D005999 ORTHO05D003360 1.6e-07 61.2 77 41.6
Glyma.11G081900 Glycine max HOM05D005999 ORTHO05D003360 2.1e-07 60.8 88 37.5
MELO3C007947.2 Cucumis melo HOM05D005999 ORTHO05D003360 2.8e-07 60.5 77 40.3
Potri.007G060400 Populus trichocarpa HOM05D005999 ORTHO05D003360 3.6e-07 60.1 80 40.0
Thecc.01G010800 Theobroma cacao HOM05D005999 ORTHO05D003360 6.2e-07 59.3 139 33.8
VMungo1215G2992 Vigna mungo HOM05D005999 ORTHO05D003360 6.2e-07 59.3 73 42.5
Ah.02g129080 Amaranthus hybridus HOM05D005999 ORTHO05D003360 8.1e-07 58.9 74 41.9
Ah.04g155230 Amaranthus hybridus HOM05D007469 ORTHO05D026517 8.1e-07 58.9 38 65.8
Prupe.7G175600 Prunus persica HOM05D005999 ORTHO05D003360 8.1e-07 58.9 73 42.5
CANSAT25G3254 Cannabis sativa HOM05D005999 ORTHO05D003360 1.1e-06 58.5 147 34.7
CSS0035556 Camellia sinensis var. sinensis HOM05D005999 ORTHO05D003360 1.4e-06 58.2 86 37.2
MD02G1122900 Malus domestica HOM05D005999 ORTHO05D003360 1.4e-06 58.2 90 36.7
Aa31LG9G1330 Aethionema arabicum HOM05D005999 ORTHO05D003360 1.8e-06 57.8 174 29.9
ECA080G0002 Erigeron canadensis HOM05D000340 ORTHO05D000821 1.8e-06 57.8 31 90.3
Medtr5g023090 Medicago truncatula HOM05D005999 ORTHO05D003360 1.8e-06 57.8 73 45.2
AUR62026216 Chenopodium quinoa HOM05D005999 ORTHO05D003360 2.4e-06 57.4 82 39.0
AUR62026380 Chenopodium quinoa HOM05D005999 ORTHO05D003360 2.4e-06 57.4 82 39.0
Phvul.002G103900 Phaseolus vulgaris HOM05D005999 ORTHO05D003360 3.1e-06 57.0 73 41.1
CSS0001074 Camellia sinensis var. sinensis HOM05D005999 ORTHO05D003360 4.0e-06 56.6 86 37.2
Duzib147G0884 Durio zibethinus HOM05D005999 ORTHO05D003360 5.2e-06 56.2 147 32.7
EL10Ac6g13337 Beta vulgaris HOM05D005999 ORTHO05D003360 8.9e-06 55.5 83 36.1
PGR119G0821 Punica granatum HOM05D005999 ORTHO05D003360 8.9e-06 55.5 167 32.3


User provided reference genes

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