Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p10540 Brassica napus HOM05D004769 ORTHO05D005605 9.3e-183 643.7 385 100.0
C04p44180 Brassica napus HOM05D004769 ORTHO05D005605 7.4e-172 607.4 389 89.2
BraA04t16720Z Brassica rapa HOM05D004769 ORTHO05D005605 7.4e-172 607.4 389 95.4
BolC4t25993H Brassica oleracea HOM05D004769 ORTHO05D005605 1.6e-171 606.3 389 88.4
BcaC02g09560 Brassica carinata HOM05D004769 ORTHO05D005605 2.4e-162 575.9 389 85.3
Carub.0007s3249 Capsella rubella HOM05D004769 ORTHO05D005605 2.3e-157 559.3 405 83.2
Sp7g05100 Schrenkiella parvula HOM05D004769 ORTHO05D005605 1.3e-155 553.5 385 79.2
AL7G46000 Arabidopsis lyrata HOM05D004769 ORTHO05D005605 3.2e-151 538.9 397 83.4
Thhalv10027788m.g Eutrema salsugineum HOM05D004769 ORTHO05D005605 1.4e-149 533.5 410 80.5
THA.LOC104823824 Tarenaya hassleriana HOM05D004769 ORTHO05D005605 2.2e-139 499.6 411 76.4
CARHR215720 Cardamine hirsuta HOM05D004769 ORTHO05D005605 2.9e-128 462.6 351 82.1
Aqoxy5G00268 Aquilegia oxysepala HOM05D004769 ORTHO05D005605 4.2e-119 432.2 411 69.3
TAR375G0174 Trochodendron aralioides HOM05D004769 ORTHO05D005605 2.8e-118 429.5 400 66.5
GSVIVG01026312001 Vitis vinifera HOM05D004769 ORTHO05D005605 4.7e-118 428.7 417 64.7
Ca_05772_v3 Cicer arietinum L. HOM05D004769 ORTHO05D005605 1.4e-117 427.2 394 65.0
Cc07_g12960 Coffea canephora HOM05D004769 ORTHO05D005605 2.3e-117 426.4 414 64.0
Hma1.2p1_0158F.1_g069800 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 2.6e-116 422.9 405 64.2
HPP92_017811 Vanilla planifolia HOM05D004769 ORTHO05D005605 1.3e-115 420.6 401 67.3
COL.COLO4_05842 Corchorus olitorius HOM05D004769 ORTHO05D005605 1.7e-115 420.2 392 63.8
MBI04_g35346_MAGBIO Magnolia biondii HOM05D004769 ORTHO05D005605 2.2e-115 419.9 427 65.1
Migut.H02243 Erythranthe guttata HOM05D004769 ORTHO05D005605 3.7e-115 419.1 404 68.6
Peaxi162Scf00442g00627 Petunia axillaris HOM05D004769 ORTHO05D005605 4.9e-115 418.7 437 60.0
Thecc.04G060900 Theobroma cacao HOM05D004769 ORTHO05D005605 4.9e-115 418.7 449 61.9
Haze_14305 Corylus avellana HOM05D004769 ORTHO05D005605 1.8e-114 416.8 442 64.7
CsaV3_5G020660 Cucumis sativus L. HOM05D004769 ORTHO05D005605 2.4e-114 416.4 442 64.0
Dinv19070 Davidia involucrata HOM05D004769 ORTHO05D005605 2.4e-114 416.4 425 64.7
Potri.017G144121 Populus trichocarpa HOM05D004769 ORTHO05D005605 5.4e-114 415.2 438 66.9
PGR042G1215 Punica granatum HOM05D004769 ORTHO05D005605 5.4e-114 415.2 429 67.8
Cpa.g.sc178.7 Carica papaya HOM05D004769 ORTHO05D005605 7.0e-114 414.8 459 60.8
Gohir.D08G062500 Gossypium hirsutum HOM05D004769 ORTHO05D005605 7.0e-114 414.8 428 67.1
Gorai.004G064700 Gossypium raimondii HOM05D004769 ORTHO05D005605 7.0e-114 414.8 427 67.2
Actinidia35715 Actinidia chinensis HOM05D004769 ORTHO05D005605 2.0e-113 413.3 413 65.1
CiPaw.03G077600 Carya illinoinensis HOM05D004769 ORTHO05D005605 2.7e-113 412.9 449 63.3
Nitab4.5_0000574g0160 Nicotiana tabacum HOM05D004769 ORTHO05D005605 2.7e-113 412.9 451 63.6
Zm00001eb377290 Zea mays HOM05D004769 ORTHO05D005605 2.7e-113 412.9 391 60.4
Potri.004G075700 Populus trichocarpa HOM05D004769 ORTHO05D005605 3.5e-113 412.5 434 64.7
ClCG01G008650 Citrullus lanatus HOM05D004769 ORTHO05D005605 4.5e-113 412.1 445 64.5
PSO017G5633 Papaver somniferum HOM05D004769 ORTHO05D005605 4.5e-113 412.1 447 66.0
Gohir.A08G052900 Gossypium hirsutum HOM05D004769 ORTHO05D005605 5.9e-113 411.8 433 65.8
TWI74G1557 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 5.9e-113 411.8 430 65.3
ECA233G3826 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.3e-112 410.6 386 69.4
RcHm_v2.0_Chr4g0398571 Rosa chinensis HOM05D004769 ORTHO05D005605 6.6e-112 408.3 421 66.5
HanXRQChr08g0218471 Helianthus annuus HOM05D004769 ORTHO05D005605 1.9e-111 406.8 393 67.9
Sc11g0004750 Simmondsia chinensis HOM05D004769 ORTHO05D005605 1.9e-111 406.8 421 66.5
Atru.chr1.1954 Acer truncatum HOM05D004769 ORTHO05D005605 2.5e-111 406.4 422 65.4
CSS0001926 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 2.5e-111 406.4 245 81.6
CANSAT78G2338 Cannabis sativa HOM05D004769 ORTHO05D005605 2.5e-111 406.4 443 63.7
Prupe.1G069400 Prunus persica HOM05D004769 ORTHO05D005605 3.3e-111 406.0 435 64.6
CAN.G525.4 Capsicum annuum HOM05D004769 ORTHO05D005605 5.6e-111 405.2 445 57.8
Rhsim10G0183300 Rhododendron simsii HOM05D004769 ORTHO05D005605 5.6e-111 405.2 386 71.0
AUR62017457 Chenopodium quinoa HOM05D004769 ORTHO05D005605 7.3e-111 404.8 376 67.3
FvH4_4g06670 Fragaria vesca HOM05D004769 ORTHO05D005605 7.3e-111 404.8 421 65.6
Medtr5g077180 Medicago truncatula HOM05D004769 ORTHO05D005605 7.3e-111 404.8 436 64.2
PGSC0003DMG400023617 Solanum tuberosum HOM05D004769 ORTHO05D005605 9.5e-111 404.4 440 58.9
Cfa007768 Carpinus fangiana HOM05D004769 ORTHO05D005605 1.6e-110 403.7 446 63.2
Sabra04G0050400 Salix brachista HOM05D004769 ORTHO05D005605 1.6e-110 403.7 444 59.7
Hma1.2p1_0034F.1_g021310 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 2.8e-110 402.9 246 81.3
Lsat_1_v5_gn_8_18601 Lactuca sativa HOM05D004769 ORTHO05D005605 6.1e-110 401.7 388 68.8
MSTRG.3686 Avicennia marina HOM05D004769 ORTHO05D005605 2.3e-109 399.8 430 59.8
TPR.G9995 Trifolium pratense HOM05D004769 ORTHO05D005605 2.3e-109 399.8 440 62.7
Lj2C513G15 Lonicera japonica HOM05D004769 ORTHO05D005605 4.0e-109 399.1 380 59.5
Os05g0178900 Oryza sativa ssp. japonica HOM05D004769 ORTHO05D005605 5.2e-109 398.7 437 63.6
Lalb_Chr17g0345901 Lupinus albus HOM05D004769 ORTHO05D005605 6.8e-109 398.3 247 81.4
Phvul.008G239200 Phaseolus vulgaris HOM05D004769 ORTHO05D005605 6.8e-109 398.3 244 81.6
MELO3C025080.2 Cucumis melo HOM05D004769 ORTHO05D005605 8.9e-109 397.9 492 57.3
TWI77G0470 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 8.9e-109 397.9 245 80.8
Sopen04g006720 Solanum pennellii HOM05D004769 ORTHO05D005605 1.2e-108 397.5 444 57.9
AUR62032521 Chenopodium quinoa HOM05D004769 ORTHO05D005605 1.5e-108 397.1 370 60.3
SGA_v2.0_scaffold115G32089 Striga asiatica HOM05D004769 ORTHO05D005605 1.5e-108 397.1 387 66.1
Solyc04g014560.4 Solanum lycopersicum HOM05D004769 ORTHO05D005605 2.0e-108 396.7 454 57.0
TAR374G1377 Trochodendron aralioides HOM05D004769 ORTHO05D005605 2.0e-108 396.7 424 58.3
ATR0083G043 Amborella trichopoda HOM05D004769 ORTHO05D005605 2.6e-108 396.4 417 67.1
Glyma.14G211600 Glycine max HOM05D004769 ORTHO05D005605 4.4e-108 395.6 244 81.1
Sed0006929 Sechium edule HOM05D004769 ORTHO05D005605 5.7e-108 395.2 449 57.7
VMungo0647G0921 Vigna mungo HOM05D004769 ORTHO05D005605 7.5e-108 394.8 245 80.4
Lalb_Chr04g0251441 Lupinus albus HOM05D004769 ORTHO05D005605 2.2e-107 393.3 228 82.9
SGA_v2.0_scaffold45G17131 Striga asiatica HOM05D004769 ORTHO05D005605 2.2e-107 393.3 386 71.2
Lj4A255T24 Lonicera japonica HOM05D004769 ORTHO05D005605 4.9e-107 392.1 400 64.8
FAN07G0829 Fragaria x ananassa HOM05D004769 ORTHO05D005605 8.3e-107 391.3 402 63.2
vmacro20487 Vaccinium macrocarpon HOM05D004769 ORTHO05D005605 1.8e-106 390.2 388 70.1
arahy.Tifrunner.gnm1.ann1.SAK0JK Arachis hypogaea HOM05D004769 ORTHO05D005605 2.4e-106 389.8 262 74.0
FAN12G3741 Fragaria x ananassa HOM05D004769 ORTHO05D005605 3.2e-106 389.4 411 66.7
MD16G1242400 Malus domestica HOM05D004769 ORTHO05D005605 3.2e-106 389.4 410 64.9
unitig_748.g7024 Utricularia gibba HOM05D004769 ORTHO05D005605 4.1e-106 389.0 245 78.0
FAN22G0974 Fragaria x ananassa HOM05D004769 ORTHO05D005605 7.0e-106 388.3 411 65.0
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 7.0e-106 388.3 242 78.9
FAN17G2568 Fragaria x ananassa HOM05D004769 ORTHO05D005605 9.2e-106 387.9 408 63.7
EL10Ac6g13916 Beta vulgaris HOM05D004769 ORTHO05D005605 5.9e-105 385.2 458 60.5
MD13G1237000 Malus domestica HOM05D004769 ORTHO05D005605 2.3e-104 383.3 414 64.5
Glyma.02G241900 Glycine max HOM05D004769 ORTHO05D005605 9.5e-103 377.9 479 56.8
DCAR_028435 Daucus carota HOM05D004769 ORTHO05D005605 2.8e-102 376.3 236 80.5
Migut.K01113 Erythranthe guttata HOM05D004769 ORTHO05D005605 4.7e-102 375.6 229 78.6
Oeu029083.1 Olea europaea HOM05D004769 ORTHO05D005605 1.1e-101 374.4 476 57.4
SMO351G0501 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 4.0e-101 372.5 408 62.0
Oeu032315.1 Olea europaea HOM05D004769 ORTHO05D005605 8.9e-101 371.3 487 53.0
QL02p060102 Quercus lobata HOM05D004769 ORTHO05D005605 1.2e-100 370.9 528 54.2
Nn1g02020 Nelumbo nucifera HOM05D004769 ORTHO05D005605 2.0e-100 370.2 436 60.3
Ah.02g128700 Amaranthus hybridus HOM05D004769 ORTHO05D005605 2.9e-99 366.3 512 48.4
MapolyY_B0025 Marchantia polymorpha HOM05D004769 ORTHO05D005605 1.2e-97 360.9 243 73.3
Mapoly0017s0020 Marchantia polymorpha HOM05D004769 ORTHO05D005605 5.0e-96 355.5 225 75.6
Pp3c14_14980 Physcomitrium patens HOM05D004769 ORTHO05D005605 3.6e-94 349.4 228 71.9
Pp3c14_14989 Physcomitrium patens HOM05D004769 ORTHO05D005605 3.6e-94 349.4 228 71.9
CBR_g22246 Chara braunii HOM05D004769 ORTHO05D005605 6.2e-94 348.6 228 73.7
LjContig00141g0012428 Lotus japonicus HOM05D004769 ORTHO05D005605 6.2e-94 348.6 433 53.3
PSO170G3102 Papaver somniferum HOM05D004769 ORTHO05D005605 3.1e-85 319.7 389 58.6
Eucgr.J01630 Eucalyptus grandis HOM05D004769 ORTHO05D005605 1.0e-80 304.7 388 61.3
CDE02G3274 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 4.4e-76 289.3 154 84.4
AT5G37370 Arabidopsis thaliana HOM05D004769 ORTHO05D005605 2.4e-74 283.5 261 77.8
Pp3c17_5870 Physcomitrium patens HOM05D004769 ORTHO05D005605 1.1e-71 274.6 188 71.8
Lalb_Chr10g0104091 Lupinus albus HOM05D004769 ORTHO05D005605 1.5e-71 274.2 145 85.5
Dinv28230 Davidia involucrata HOM05D004769 ORTHO05D005605 2.1e-65 253.8 315 61.3
CDE02G0598 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 3.9e-64 249.6 159 72.3
Nitab4.5_0005193g0040 Nicotiana tabacum HOM05D004769 ORTHO05D005605 1.1e-63 248.1 354 58.8
Sed0026946 Sechium edule HOM05D004769 ORTHO05D005605 1.6e-62 244.2 347 57.6
Cre03.g178300 Chlamydomonas reinhardtii HOM05D004769 ORTHO05D005605 6.2e-62 242.3 219 57.1
MCO07G113 Micromonas commoda HOM05D004769 ORTHO05D005605 5.8e-60 235.7 226 50.0
PRCOL_00000163 Prasinoderma coloniale HOM05D004769 ORTHO05D005605 7.6e-60 235.3 211 55.0
SEGI_40758 Sequoiadendron giganteum HOM05D004769 ORTHO05D005605 5.5e-58 229.2 143 80.4
Ciclev10018227m.g Citrus clementina HOM05D004769 ORTHO05D005605 1.6e-57 227.6 146 75.3
Lj1g0013060 Lotus japonicus HOM05D004769 ORTHO05D005605 1.4e-53 214.5 173 64.7
Zm00001eb283000 Zea mays HOM05D004769 ORTHO05D005605 3.1e-53 213.4 313 58.1
CDE02G1258 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 9.0e-53 211.8 279 60.2
SMO231G0026 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 8.4e-51 205.3 371 52.3
Ciclev10015797m.g Citrus clementina HOM05D004769 ORTHO05D005605 3.2e-50 203.4 347 57.6
Aa31LG9G17630 Aethionema arabicum HOM05D004769 ORTHO05D005605 7.1e-50 202.2 98 94.9
Duzib211G0206 Durio zibethinus HOM05D004769 ORTHO05D005605 2.7e-49 200.3 327 56.9
Oeu048972.1 Olea europaea HOM05D004769 ORTHO05D005605 3.9e-48 196.4 114 79.8
CSS0045560 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 1.9e-42 177.6 92 83.7
Sed0001997 Sechium edule HOM05D004769 ORTHO05D005605 4.2e-42 176.4 101 81.2
Gohir.A02G124601 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.1e-39 168.3 96 83.3
Zm00001eb361740 Zea mays HOM05D004769 ORTHO05D005605 1.3e-38 164.9 96 80.2
Manes.02G080000 Manihot esculenta HOM05D004769 ORTHO05D005605 3.7e-38 163.3 323 54.2
SMO231G0020 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 8.2e-38 162.2 130 58.5
Zm00001eb046660 Zea mays HOM05D004769 ORTHO05D005605 7.7e-36 155.6 84 83.3
Zm00001eb221230 Zea mays HOM05D004769 ORTHO05D005605 8.5e-35 152.1 83 81.9
HanXRQChr14g0429111 Helianthus annuus HOM05D004769 ORTHO05D005605 5.1e-32 142.9 80 85.0
Gohir.A11G193800 Gossypium hirsutum HOM05D004769 ORTHO05D005605 3.3e-31 140.2 85 80.0
HanXRQChr14g0429051 Helianthus annuus HOM05D004769 ORTHO05D005605 1.3e-30 138.3 80 83.8
Psat2g044720 Pisum sativum HOM05D004769 ORTHO05D005605 1.3e-27 128.3 103 69.9
MD01G1153700 Malus domestica HOM05D004769 ORTHO05D005605 2.9e-27 127.1 79 74.7
Lalb_Chr10g0104101 Lupinus albus HOM05D004769 ORTHO05D005605 3.2e-26 123.6 297 49.8
Gohir.A08G086562 Gossypium hirsutum HOM05D004769 ORTHO05D005605 2.6e-23 114.0 83 69.9
CSS0036345 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 1.3e-22 111.7 262 57.6
ATR0127G005 Amborella trichopoda HOM05D004769 ORTHO05D005605 1.4e-21 108.2 78 73.1
Lj2g0009880 Lotus japonicus HOM05D004769 ORTHO05D005605 5.9e-20 102.8 74 67.6
CDE02G3573 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 3.8e-19 100.1 215 48.4
HanXRQChr08g0224021 Helianthus annuus HOM05D004769 ORTHO05D005605 1.5e-18 98.2 60 78.3
Lj1g0013083 Lotus japonicus HOM05D004769 ORTHO05D005605 3.2e-18 97.1 68 64.7
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 2.3e-16 90.9 241 53.1
FAN07G1815 Fragaria x ananassa HOM05D004769 ORTHO05D005605 9.7e-15 85.5 234 53.8
SMO351G0097 Selaginella moellendorffii HOM05D007698 ORTHO05D009663 1.7e-14 84.7 61 62.3
Actinidia28787 Actinidia chinensis HOM05D004769 ORTHO05D005605 3.8e-11 73.6 267 45.7
Zm00001eb313200 Zea mays HOM05D004769 ORTHO05D005605 6.5e-11 72.8 43 79.1
AagrBONN_evm.TU.Sc2ySwM_344.2680 Anthoceros agrestis HOM05D004769 ORTHO05D005605 1.7e-06 58.2 248 37.9


User provided reference genes

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