Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 3.0e-309 1064.3 528 100.0
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 3.0e-309 1064.3 528 100.0
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 3.0e-309 1064.3 528 100.0
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 3.0e-309 1064.3 528 100.0
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 3.0e-309 1064.3 528 100.0
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 1.0e-304 1049.3 524 99.2
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 2.2e-304 1048.1 524 98.9
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 1.5e-295 1018.8 528 96.6
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 2.3e-293 1011.5 528 95.8
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 4.8e-291 1003.8 525 96.0
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 4.8e-291 1003.8 527 95.8
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 2.0e-289 998.4 526 96.0
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 5.5e-287 990.3 499 98.4
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 5.2e-285 983.8 525 94.7
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 6.8e-285 983.4 528 94.7
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 1.2e-284 982.6 528 94.3
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 1.2e-284 982.6 528 94.3
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 1.2e-284 982.6 528 94.3
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 2.6e-284 981.5 528 94.5
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 2.6e-284 981.5 528 94.5
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 3.1e-282 974.5 528 93.9
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 2.7e-281 971.5 499 97.6
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 3.5e-281 971.1 527 93.2
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.3e-279 964.5 499 96.8
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.3e-279 964.5 499 96.8
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.3e-279 964.5 499 96.8
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 2.4e-274 948.3 527 91.3
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 1.4e-269 932.6 499 94.4
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 1.2e-262 909.4 527 89.0
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 5.4e-258 894.0 516 89.9
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 7.1e-258 893.6 479 93.3
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 1.0e-256 889.8 499 91.8
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 1.5e-255 885.9 525 86.5
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 4.0e-253 877.9 528 84.7
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 6.8e-253 877.1 457 96.3
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 5.8e-244 847.4 508 87.4
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 3.8e-243 844.7 503 87.9
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 8.4e-243 843.6 523 84.7
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 9.3e-242 840.1 421 100.0
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 3.5e-241 838.2 420 100.0
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 3.4e-236 821.6 498 85.7
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 7.6e-236 820.5 489 87.5
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 2.8e-230 802.0 457 90.2
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 1.9e-226 789.3 392 100.0
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 1.3e-216 756.5 452 87.2
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 8.7e-216 753.8 489 82.2
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 2.5e-215 752.3 455 86.4
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 5.1e-200 701.4 462 80.5
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 5.9e-188 661.4 355 93.8
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 8.0e-185 651.0 457 76.1
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 4.5e-180 635.2 461 75.5
SHI26645 Sapria himalayana HOM05D004537 ORTHO05D005492 5.5e-170 601.7 318 93.7
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.0e-168 597.4 522 63.8
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 6.8e-168 594.7 439 73.6
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 3.1e-160 569.3 284 97.9
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.6e-159 566.2 355 82.0
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 1.3e-158 563.9 297 97.3
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 2.0e-156 556.6 284 96.5
RhsimMtG0000400 Rhododendron simsii HOM05D004537 ORTHO05D005492 9.5e-154 547.7 317 87.1
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 5.4e-141 505.4 365 74.5
unitig_87.g28000 Utricularia gibba HOM05D004537 ORTHO05D005492 1.7e-139 500.4 254 96.9
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 1.2e-137 494.2 659 47.8
Ah.14g079610 Amaranthus hybridus HOM05D004537 ORTHO05D005492 2.8e-137 493.0 250 96.4
HanXRQChr08g0236111 Helianthus annuus HOM05D004537 ORTHO05D005492 3.8e-134 482.6 254 94.5
Psat0s12108g0080 Pisum sativum HOM05D004537 ORTHO05D005492 2.4e-133 479.9 254 94.1
Pp3c4_28940 Physcomitrium patens HOM05D004537 ORTHO05D005492 1.2e-132 477.6 274 87.2
Pp3c4_28946 Physcomitrium patens HOM05D004537 ORTHO05D005492 1.2e-132 477.6 274 87.2
Solyc11g063610.3 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.3e-131 474.2 265 92.1
unitig_87.g28001 Utricularia gibba HOM05D004537 ORTHO05D005492 9.9e-127 458.0 242 96.3
RcHm_v2.0_MTg0498791 Rosa chinensis HOM05D004537 ORTHO05D005492 1.9e-122 443.7 261 87.7
PSO384G3370 Papaver somniferum HOM05D004537 ORTHO05D005492 9.9e-119 431.4 227 96.9
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 1.6e-116 424.1 527 51.0
LjContig00315g0010412 Lotus japonicus HOM05D004537 ORTHO05D005492 2.5e-114 416.8 307 73.3
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 5.3e-112 409.1 235 87.2
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 3.4e-111 406.4 432 53.0
BraSC48t46325Z Brassica rapa HOM05D004537 ORTHO05D005492 2.8e-105 386.7 204 96.6
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 3.7e-105 386.3 312 70.8
HanXRQChr04g0127221 Helianthus annuus HOM05D004537 ORTHO05D005492 4.8e-105 386.0 222 91.9
RcHm_v2.0_MTg0498781 Rosa chinensis HOM05D004537 ORTHO05D005492 2.2e-102 377.1 189 96.3
Nn003s41396 Nelumbo nucifera HOM05D004537 ORTHO05D005492 3.3e-98 363.2 189 94.7
Nn1g09964 Nelumbo nucifera HOM05D004537 ORTHO05D005492 3.3e-98 363.2 189 94.7
Nn1g10125 Nelumbo nucifera HOM05D004537 ORTHO05D005492 3.3e-98 363.2 189 94.7
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 2.0e-95 354.0 504 44.8
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.6e-95 353.6 355 59.4
HanXRQChr04g0127211 Helianthus annuus HOM05D004537 ORTHO05D005492 1.7e-94 350.9 189 91.5
MD13G1127000 Malus domestica HOM05D004537 ORTHO05D005492 1.6e-92 344.4 262 76.3
SMO053G0009 Selaginella moellendorffii HOM05D004537 ORTHO05D005492 1.3e-89 334.7 427 52.7
CAN.G61.11 Capsicum annuum HOM05D004537 ORTHO05D005492 1.9e-85 320.9 328 55.8
Solyc08g029280.2 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.1e-82 311.6 321 56.1
Haze_27101 Corylus avellana HOM05D004537 ORTHO05D005492 2.6e-82 310.5 373 43.2
TPR.G4012 Trifolium pratense HOM05D004537 ORTHO05D005492 2.2e-81 307.4 161 96.3
CAN.G416.37 Capsicum annuum HOM05D004537 ORTHO05D005492 2.8e-81 307.0 197 79.2
Solyc02g021770.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.2e-73 280.8 159 89.9
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.4e-67 261.5 434 44.5
BraSC48t46324Z Brassica rapa HOM05D004537 ORTHO05D005492 9.1e-64 248.8 235 63.0
SHI26667 Sapria himalayana HOM05D004537 ORTHO05D005492 6.5e-62 242.7 244 57.8
SHI27475 Sapria himalayana HOM05D004537 ORTHO05D005492 5.5e-61 239.6 183 69.9
Haze_27411 Corylus avellana HOM05D004537 ORTHO05D005492 6.1e-60 236.1 283 51.2
MELO3C027747.2 Cucumis melo HOM05D004537 ORTHO05D005492 8.3e-57 225.7 118 96.6
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 1.1e-56 225.3 134 77.6
CARHR288190 Cardamine hirsuta HOM05D004537 ORTHO05D005492 2.4e-56 224.2 105 100.0
SHI20135 Sapria himalayana HOM05D004537 ORTHO05D005492 5.4e-56 223.0 175 68.0
PGR071G0006 Punica granatum HOM05D004537 ORTHO05D005492 2.0e-55 221.1 241 56.4
Lalb_Chr11g0071071 Lupinus albus HOM05D004537 ORTHO05D005492 1.7e-54 218.0 128 85.2
MELO3C021523.2 Cucumis melo HOM05D004537 ORTHO05D005492 1.2e-52 211.8 148 77.7
Migut.E01634 Erythranthe guttata HOM05D004537 ORTHO05D005492 2.8e-52 210.7 138 81.9
Ah.10g027900 Amaranthus hybridus HOM05D004537 ORTHO05D005492 4.0e-51 206.8 105 93.3
Ah.10g028280 Amaranthus hybridus HOM05D004537 ORTHO05D005492 4.0e-51 206.8 105 93.3
Migut.E00896 Erythranthe guttata HOM05D004537 ORTHO05D005492 8.9e-51 205.7 137 81.0
HPP92_007209 Vanilla planifolia HOM05D004537 ORTHO05D005492 5.9e-47 193.0 100 95.0
SHI27477 Sapria himalayana HOM05D004537 ORTHO05D005492 3.9e-46 190.3 227 51.1
Aa31csc464G10 Aethionema arabicum HOM05D004537 ORTHO05D005492 1.9e-45 188.0 91 95.6
SalBow1G2743 Salvia bowleyana HOM05D004537 ORTHO05D005492 9.5e-45 185.7 95 92.6
HanXRQChr05g0159721 Helianthus annuus HOM05D004537 ORTHO05D005492 1.2e-44 185.3 109 82.6
SGA_v2.0_scaffold400G50927 Striga asiatica HOM05D004537 ORTHO05D005492 1.8e-43 181.4 94 91.5
Medtr8g106255 Medicago truncatula HOM05D004537 ORTHO05D005492 2.2e-41 174.5 91 93.4
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 6.4e-41 172.9 153 66.0
Lsat_1_v5_gn_8_134521 Lactuca sativa HOM05D004537 ORTHO05D005492 1.9e-40 171.4 99 82.8
Eucgr.E01613 Eucalyptus grandis HOM05D004537 ORTHO05D005492 2.0e-39 167.9 95 91.6
SHI36146 Sapria himalayana HOM05D004537 ORTHO05D005492 2.7e-39 167.5 85 92.9
Medtr0024s0110 Medicago truncatula HOM05D004537 ORTHO05D005492 7.8e-39 166.0 197 50.8
CAN.G889.6 Capsicum annuum HOM05D004537 ORTHO05D005492 1.0e-38 165.6 91 92.3
CAN.G999.40 Capsicum annuum HOM05D004537 ORTHO05D005492 2.3e-38 164.5 156 60.9
CAN.G60.10 Capsicum annuum HOM05D004537 ORTHO05D005492 3.9e-38 163.7 165 58.8
Nitab4.5_0000074g0200 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.5e-37 161.8 102 78.4
Nitab4.5_0000161g0030 Nicotiana tabacum HOM05D008163 ORTHO05D010305 1.2e-34 152.1 127 63.8
SHI27476 Sapria himalayana HOM05D004537 ORTHO05D005492 1.2e-34 152.1 92 81.5
SHI01747 Sapria himalayana HOM05D004537 ORTHO05D005492 1.5e-34 151.8 163 59.5
Lsat_1_v5_gn_4_114400 Lactuca sativa HOM05D004537 ORTHO05D005492 2.0e-34 151.4 89 80.9
Glyma.03G094400 Glycine max HOM05D004537 ORTHO05D005492 4.4e-34 150.2 81 90.1
SHI26666 Sapria himalayana HOM05D004537 ORTHO05D005492 2.4e-32 144.4 106 71.7
Lalb_Chr20g0115011 Lupinus albus HOM05D004537 ORTHO05D005492 5.2e-27 126.7 112 66.1
SHI20133 Sapria himalayana HOM05D004537 ORTHO05D005492 8.9e-27 125.9 80 78.8
GSVIVG01020676001 Vitis vinifera HOM05D004537 ORTHO05D005492 2.0e-26 124.8 129 58.9
Lalb_Chr00c21g0405811 Lupinus albus HOM05D004537 ORTHO05D005492 1.6e-23 115.2 56 96.4
Nitab4.5_0001234g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 4.6e-23 113.6 92 72.8
Solyc08g029290.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 7.8e-23 112.8 76 73.7
Mapoly0006s0021 Marchantia polymorpha HOM05D004537 ORTHO05D005492 1.3e-22 112.1 64 84.4
GSVIVG01012277001 Vitis vinifera HOM05D004537 ORTHO05D005492 8.6e-22 109.4 70 78.6
HanXRQChr16g0503301 Helianthus annuus HOM05D004537 ORTHO05D005492 7.3e-21 106.3 73 69.9
ClCG09G001530 Citrullus lanatus HOM05D004537 ORTHO05D005492 3.6e-20 104.0 68 79.4
C04p32420 Brassica napus HOM05D004537 ORTHO05D005492 1.8e-19 101.7 70 77.1
CAN.G1103.8 Capsicum annuum HOM05D004537 ORTHO05D005492 3.1e-19 100.9 53 86.8
ECA240G1937 Erigeron canadensis HOM05D004537 ORTHO05D011667 2.2e-17 94.7 47 97.9
EL10Ac5g12760 Beta vulgaris HOM05D004537 ORTHO05D005492 2.4e-16 91.3 46 91.3
TPR.G39033 Trifolium pratense HOM05D004537 ORTHO05D005492 6.0e-15 86.7 50 84.0
SHI20134 Sapria himalayana HOM05D004537 ORTHO05D005492 5.1e-14 83.6 50 80.0
Ah.03g142980 Amaranthus hybridus HOM05D001159 ORTHO05D005492 6.6e-14 83.2 48 87.5
Nitab4.5_0002322g0200 Nicotiana tabacum HOM05D004537 ORTHO05D015169 1.5e-13 82.0 41 95.1
Nitab4.5_0001127g0350 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.6e-12 78.6 41 90.2
SHI30018 Sapria himalayana HOM05D004537 ORTHO05D005492 6.2e-12 76.6 56 69.6
MELO3C021574.2 Cucumis melo HOM05D004537 ORTHO05D005492 3.1e-11 74.3 50 78.0
BolC4t24790H Brassica oleracea HOM05D004537 ORTHO05D005492 6.9e-11 73.2 35 94.3
ATR1125G006 Amborella trichopoda HOM05D004537 ORTHO05D005492 9.0e-11 72.8 33 97.0
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.2e-10 72.4 36 91.7
arahy.Tifrunner.gnm1.ann1.7DQW64 Arachis hypogaea HOM05D000963 ORTHO05D005131 1.3e-09 68.9 34 94.1
Nitab4.5_0003938g0030 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.2e-09 68.2 61 60.7
TPR.G9938 Trifolium pratense HOM05D004537 ORTHO05D005492 4.9e-09 67.0 46 73.9


User provided reference genes

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