Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p04410 Brassica napus HOM05D001415 ORTHO05D001075 1.6e-45 185.7 89 100.0
BraA04t16154Z Brassica rapa HOM05D001415 ORTHO05D001075 1.6e-45 185.7 89 100.0
BcaB02g08413 Brassica carinata HOM05D001415 ORTHO05D001075 1.1e-43 179.5 89 96.6
BcaC02g09763 Brassica carinata HOM05D001415 ORTHO05D001075 1.1e-43 179.5 89 96.6
C04p36850 Brassica napus HOM05D001415 ORTHO05D001075 1.1e-43 179.5 89 96.6
BolC4t25114H Brassica oleracea HOM05D001415 ORTHO05D001075 1.5e-43 179.1 89 96.6
BcaB02g08412 Brassica carinata HOM05D001415 ORTHO05D001075 2.2e-42 175.3 89 94.4
A09p48520 Brassica napus HOM05D001415 ORTHO05D001075 9.4e-30 133.3 82 82.9
C08p30820 Brassica napus HOM05D001415 ORTHO05D001075 9.4e-30 133.3 82 82.9
BraA09t40304Z Brassica rapa HOM05D001415 ORTHO05D001075 9.4e-30 133.3 82 82.9
BcaC07g39877 Brassica carinata HOM05D001415 ORTHO05D001075 6.1e-29 130.6 82 81.7
BolC8t50708H Brassica oleracea HOM05D001415 ORTHO05D001075 6.1e-29 130.6 82 81.7
BcaB01g00087 Brassica carinata HOM05D001415 ORTHO05D001075 4.0e-28 127.9 84 73.8
Thhalv10010948m.g Eutrema salsugineum HOM05D001415 ORTHO05D001075 4.0e-28 127.9 93 69.9
AL5G36670 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 1.8e-20 102.4 79 65.8
AT3G55515 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 1.5e-19 99.4 72 69.4
CARHR165570 Cardamine hirsuta HOM05D001415 ORTHO05D001075 1.4e-17 92.8 76 64.5
Carub.0005s2224 Capsella rubella HOM05D001415 ORTHO05D001075 1.2e-16 89.7 81 60.5
BolC4t28246H Brassica oleracea HOM05D001415 ORTHO05D001075 1.5e-14 82.8 81 53.1
A04p30340 Brassica napus HOM05D001415 ORTHO05D001075 5.5e-14 80.9 81 51.9
BraA04t18474Z Brassica rapa HOM05D001415 ORTHO05D001075 5.5e-14 80.9 81 51.9
BcaC02g07426 Brassica carinata HOM05D001415 ORTHO05D001075 9.5e-14 80.1 81 54.3
C04p67490 Brassica napus HOM05D001415 ORTHO05D001075 9.5e-14 80.1 81 54.3
CARHR134540 Cardamine hirsuta HOM05D001415 ORTHO05D001075 1.6e-13 79.3 85 50.6
BcaB06g29109 Brassica carinata HOM05D001415 ORTHO05D001075 2.1e-13 79.0 84 51.2
AL4G37150 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 2.8e-13 78.6 73 56.2
AT2G39705 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 2.8e-13 78.6 73 56.2
Carub.0004s2175 Capsella rubella HOM05D001415 ORTHO05D001075 6.1e-13 77.4 73 54.8
Sp4g21960 Schrenkiella parvula HOM05D001415 ORTHO05D001075 8.0e-13 77.0 88 48.9
Thhalv10017695m.g Eutrema salsugineum HOM05D001415 ORTHO05D001075 1.4e-12 76.3 84 46.4
BcaB02g09096 Brassica carinata HOM05D001415 ORTHO05D001075 2.3e-12 75.5 87 49.4
Potri.010G201700 Populus trichocarpa HOM05D001415 ORTHO05D001075 3.0e-12 75.1 82 46.3
BcaC02g12100 Brassica carinata HOM05D001415 ORTHO05D001075 5.2e-12 74.3 84 47.6
A05p06700 Brassica napus HOM05D001415 ORTHO05D001075 5.2e-12 74.3 84 47.6
C04p07830 Brassica napus HOM05D001415 ORTHO05D001075 5.2e-12 74.3 84 47.6
BolC4t22402H Brassica oleracea HOM05D001415 ORTHO05D001075 5.2e-12 74.3 84 47.6
BraA05t19637Z Brassica rapa HOM05D001415 ORTHO05D001075 5.2e-12 74.3 84 47.6
THA.LOC104810035 Tarenaya hassleriana HOM05D001415 ORTHO05D001075 5.2e-12 74.3 85 48.2
THA.LOC109117081 Tarenaya hassleriana HOM05D001415 ORTHO05D001075 2.0e-11 72.4 86 48.8
Manes.07G117800 Manihot esculenta HOM05D001415 ORTHO05D001075 5.7e-11 70.9 84 47.6
Manes.10G028700 Manihot esculenta HOM05D001415 ORTHO05D001075 7.5e-11 70.5 83 47.0
CiPaw.02G185400 Carya illinoinensis HOM05D001415 ORTHO05D001075 1.7e-10 69.3 68 48.5
Nn2g13402 Nelumbo nucifera HOM05D001415 ORTHO05D001075 1.7e-10 69.3 76 47.4
Lalb_Chr15g0084661 Lupinus albus HOM05D001415 ORTHO05D001075 2.2e-10 68.9 79 48.1
Migut.F01456 Erythranthe guttata HOM05D001415 ORTHO05D001075 4.9e-10 67.8 79 46.8
Lalb_Chr18g0053201 Lupinus albus HOM05D001415 ORTHO05D001075 6.3e-10 67.4 68 48.5
Potri.008G057800 Populus trichocarpa HOM05D001415 ORTHO05D001075 8.3e-10 67.0 79 43.0
Gohir.A13G018500 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.1e-09 66.6 78 43.6
Aqoxy2G02269 Aquilegia oxysepala HOM05D001415 ORTHO05D001075 1.4e-09 66.2 65 46.2
Actinidia02936 Actinidia chinensis HOM05D001415 ORTHO05D001075 1.8e-09 65.9 68 48.5
ECA238G4842 Erigeron canadensis HOM05D001415 ORTHO05D001075 2.4e-09 65.5 80 48.8
CiPaw.01G289500 Carya illinoinensis HOM05D001415 ORTHO05D001075 3.1e-09 65.1 68 47.1
TPR.G3500 Trifolium pratense HOM05D001415 ORTHO05D001075 3.1e-09 65.1 68 48.5
Cc02_g07600 Coffea canephora HOM05D001415 ORTHO05D001075 4.1e-09 64.7 81 44.4
Haze_17089 Corylus avellana HOM05D001415 ORTHO05D001075 4.1e-09 64.7 80 42.5
Hma1.2p1_0998F.1_g246100 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 4.1e-09 64.7 70 47.1
DCAR_027603 Daucus carota HOM05D001415 ORTHO05D001075 5.4e-09 64.3 74 45.9
Medtr3g067980 Medicago truncatula HOM05D001415 ORTHO05D001075 5.4e-09 64.3 79 46.8
Lsat_1_v5_gn_9_64901 Lactuca sativa HOM05D001415 ORTHO05D001075 9.2e-09 63.5 79 43.0
Cfa001452 Carpinus fangiana HOM05D001415 ORTHO05D001075 1.2e-08 63.2 68 44.1
Sabra08G0042400 Salix brachista HOM05D001415 ORTHO05D001075 1.2e-08 63.2 75 45.3
Ca_05883_v3 Cicer arietinum L. HOM05D001415 ORTHO05D001075 1.6e-08 62.8 68 47.1
Migut.F01961 Erythranthe guttata HOM05D001415 ORTHO05D001075 1.6e-08 62.8 48 62.5
Hma1.2p1_1480F.1_g286050 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 1.6e-08 62.8 78 43.6
MBI14_g04657_MAGBIO Magnolia biondii HOM05D001415 ORTHO05D001075 1.6e-08 62.8 76 44.7
Lsat_1_v5_gn_2_118460 Lactuca sativa HOM05D001415 ORTHO05D001075 2.0e-08 62.4 68 48.5
Nn2g11165 Nelumbo nucifera HOM05D001415 ORTHO05D001075 2.0e-08 62.4 79 43.0
Rhsim03G0133500 Rhododendron simsii HOM05D001415 ORTHO05D001075 2.7e-08 62.0 65 47.7
Sc10g0001700 Simmondsia chinensis HOM05D001415 ORTHO05D001075 2.7e-08 62.0 66 48.5
CANSAT56G0089 Cannabis sativa HOM05D001415 ORTHO05D001075 3.5e-08 61.6 68 44.1
MD07G1201200 Malus domestica HOM05D001415 ORTHO05D001075 4.5e-08 61.2 73 45.2
Ciclev10033183m.g Citrus clementina HOM05D001415 ORTHO05D001075 5.9e-08 60.8 83 41.0
Gohir.D13G019500 Gossypium hirsutum HOM05D001415 ORTHO05D001075 5.9e-08 60.8 65 44.6
Medtr5g080260 Medicago truncatula HOM05D001415 ORTHO05D001075 5.9e-08 60.8 68 45.6
Phvul.008G191701 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 5.9e-08 60.8 68 44.1
Phvul.001G233300 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 7.8e-08 60.5 64 53.1
Lalb_Chr17g0346301 Lupinus albus HOM05D001415 ORTHO05D001075 1.0e-07 60.1 89 41.6
ClCG09G019600 Citrullus lanatus HOM05D001415 ORTHO05D001075 1.3e-07 59.7 80 45.0
TPR.G15833 Trifolium pratense HOM05D001415 ORTHO05D001075 1.3e-07 59.7 36 69.4
LjContig00141g0017499 Lotus japonicus HOM05D001415 ORTHO05D001075 1.7e-07 59.3 83 43.4
Prupe.3G029700 Prunus persica HOM05D001415 ORTHO05D001075 1.7e-07 59.3 48 56.2
SalBow6G6345 Salvia bowleyana HOM05D001415 ORTHO05D001075 1.7e-07 59.3 72 41.7
Lalb_Chr10g0104651 Lupinus albus HOM05D001415 ORTHO05D001075 2.3e-07 58.9 84 45.2
Glyma.14G067500 Glycine max HOM05D001415 ORTHO05D001075 2.9e-07 58.5 72 44.4
HanXRQChr07g0201511 Helianthus annuus HOM05D001415 ORTHO05D001075 2.9e-07 58.5 70 42.9
Potri.002G235101 Populus trichocarpa HOM05D001415 ORTHO05D001075 2.9e-07 58.5 43 60.5
Atru.chr12.418 Acer truncatum HOM05D001415 ORTHO05D001075 3.9e-07 58.2 91 38.5
CSS0013409 Camellia sinensis var. sinensis HOM05D001415 ORTHO05D001075 3.9e-07 58.2 69 42.0
CsaV3_5G026780 Cucumis sativus L. HOM05D001415 ORTHO05D001075 3.9e-07 58.2 68 47.1
Duzib114G0513 Durio zibethinus HOM05D001415 ORTHO05D001075 3.9e-07 58.2 31 77.4
Glyma.02G248900 Glycine max HOM05D001415 ORTHO05D001075 3.9e-07 58.2 69 43.5
Gohir.A05G348600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.9e-07 58.2 34 70.6
Gohir.D04G063900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.9e-07 58.2 34 70.6
Gorai.012G071500 Gossypium raimondii HOM05D001415 ORTHO05D001075 3.9e-07 58.2 34 70.6
Gorai.013G021600 Gossypium raimondii HOM05D001415 ORTHO05D001075 3.9e-07 58.2 31 77.4
MBI05_g29691_MAGBIO Magnolia biondii HOM05D001415 ORTHO05D001075 3.9e-07 58.2 100 38.0
RcHm_v2.0_Chr1g0367921 Rosa chinensis HOM05D001415 ORTHO05D001075 3.9e-07 58.2 34 70.6
Sed0019804 Sechium edule HOM05D001415 ORTHO05D001075 3.9e-07 58.2 44 54.5
Thecc.10G036800 Theobroma cacao HOM05D001415 ORTHO05D001075 3.9e-07 58.2 31 77.4
ClCG07G003480 Citrullus lanatus HOM05D001415 ORTHO05D001075 5.0e-07 57.8 74 43.2
MELO3C021616.2 Cucumis melo HOM05D001415 ORTHO05D001075 5.0e-07 57.8 70 44.3
Duzib128G0356 Durio zibethinus HOM05D001415 ORTHO05D001075 5.0e-07 57.8 31 74.2
Glyma.11G220000 Glycine max HOM05D001415 ORTHO05D001075 5.0e-07 57.8 34 73.5
HanXRQChr09g0250171 Helianthus annuus HOM05D001415 ORTHO05D001075 5.0e-07 57.8 53 56.6
HanXRQChr10g0312871 Helianthus annuus HOM05D001415 ORTHO05D001075 5.0e-07 57.8 31 77.4
Prupe.2G237800 Prunus persica HOM05D001415 ORTHO05D001075 5.0e-07 57.8 34 67.6
SalBow6G2192 Salvia bowleyana HOM05D001415 ORTHO05D001075 5.0e-07 57.8 46 58.7
PSO274G0001 Papaver somniferum HOM05D001415 ORTHO05D001075 6.6e-07 57.4 46 54.3
PSO513G0025 Papaver somniferum HOM05D001415 ORTHO05D001075 6.6e-07 57.4 46 54.3
Sed0008951 Sechium edule HOM05D001415 ORTHO05D001075 6.6e-07 57.4 78 42.3
MELO3C023874.2 Cucumis melo HOM05D001415 ORTHO05D001075 8.6e-07 57.0 77 44.2
Eucgr.J01236 Eucalyptus grandis HOM05D001415 ORTHO05D001075 8.6e-07 57.0 29 79.3
MD01G1136300 Malus domestica HOM05D001415 ORTHO05D001075 8.6e-07 57.0 31 74.2
QL08p060355 Quercus lobata HOM05D001415 ORTHO05D001075 8.6e-07 57.0 34 67.6
A03p07530 Brassica napus HOM05D004326 ORTHO05D004570 1.1e-06 56.6 49 51.0
BraA03t10081Z Brassica rapa HOM05D004326 ORTHO05D004570 1.1e-06 56.6 49 51.0
CSS0014027 Camellia sinensis var. sinensis HOM05D001415 ORTHO05D001075 1.1e-06 56.6 36 63.9
Gohir.A10G220900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.1e-06 56.6 37 64.9
Gohir.D10G233100 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.1e-06 56.6 37 64.9
Gorai.011G266700 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.1e-06 56.6 37 64.9
Lalb_Chr04g0251121 Lupinus albus HOM05D001415 ORTHO05D001075 1.1e-06 56.6 39 64.1
Sed0003934 Sechium edule HOM05D001415 ORTHO05D001075 1.1e-06 56.6 89 39.3
Dinv26032 Davidia involucrata HOM05D000371 ORTHO05D008019 1.5e-06 56.2 29 79.3
Migut.I01146 Erythranthe guttata HOM05D001415 ORTHO05D001075 1.5e-06 56.2 42 57.1
FAN10G0897 Fragaria x ananassa HOM05D001415 ORTHO05D001075 1.5e-06 56.2 77 40.3
Glyma.18G037400 Glycine max HOM05D001415 ORTHO05D001075 1.5e-06 56.2 67 46.3
SalBow7G1955 Salvia bowleyana HOM05D001415 ORTHO05D001075 1.5e-06 56.2 43 55.8
PGSC0003DMG400006357 Solanum tuberosum HOM05D001415 ORTHO05D001075 1.5e-06 56.2 59 47.5
MELO3C019818.2 Cucumis melo HOM05D001415 ORTHO05D001075 1.9e-06 55.8 44 52.3
FAN03G1064 Fragaria x ananassa HOM05D001415 ORTHO05D001075 1.9e-06 55.8 71 39.4
SalBow1G2982 Salvia bowleyana HOM05D000007 ORTHO05D000521 1.9e-06 55.8 45 51.1
Manes.04G152500 Manihot esculenta HOM05D001415 ORTHO05D001075 2.5e-06 55.5 41 63.4
CsaV3_6G036630 Cucumis sativus L. HOM05D001415 ORTHO05D001075 3.3e-06 55.1 44 52.3
MD01G1103800 Malus domestica HOM05D001415 ORTHO05D001075 3.3e-06 55.1 53 45.3
Nn2g11570 Nelumbo nucifera HOM05D001415 ORTHO05D001075 3.3e-06 55.1 31 71.0
Potri.001G161200 Populus trichocarpa HOM05D001415 ORTHO05D001075 3.3e-06 55.1 35 62.9
BolC3t14783H Brassica oleracea HOM05D001415 ORTHO05D001075 4.3e-06 54.7 40 52.5
CAN.G1366.20 Capsicum annuum HOM05D001415 ORTHO05D001075 4.3e-06 54.7 31 71.0
Lalb_Chr02g0152101 Lupinus albus HOM05D001415 ORTHO05D001075 4.3e-06 54.7 37 59.5
PSO135G0377 Papaver somniferum HOM05D001415 ORTHO05D001075 4.3e-06 54.7 45 55.6
CSS0026842 Camellia sinensis var. sinensis HOM05D001415 ORTHO05D001075 5.6e-06 54.3 31 67.7
Dinv37809 Davidia involucrata HOM05D001415 ORTHO05D001075 5.6e-06 54.3 34 70.6
HanXRQChr01g0010481 Helianthus annuus HOM05D001415 ORTHO05D001075 5.6e-06 54.3 38 60.5
HPP92_006626 Vanilla planifolia HOM05D001415 ORTHO05D001075 5.6e-06 54.3 81 38.3
ATR0626G034 Amborella trichopoda HOM05D001415 ORTHO05D001075 7.3e-06 53.9 36 61.1
A10p23030 Brassica napus HOM05D004326 ORTHO05D004570 7.3e-06 53.9 49 46.9
BolC9t58947H Brassica oleracea HOM05D004326 ORTHO05D004570 7.3e-06 53.9 49 46.9
BraA10t44372Z Brassica rapa HOM05D004326 ORTHO05D004570 7.3e-06 53.9 49 46.9
DCAR_022634 Daucus carota HOM05D001415 ORTHO05D001075 7.3e-06 53.9 36 63.9
Lsat_1_v5_gn_5_169241 Lactuca sativa HOM05D001415 ORTHO05D001075 7.3e-06 53.9 38 60.5
MD07G1170600 Malus domestica HOM05D001415 ORTHO05D001075 7.3e-06 53.9 48 50.0
Potri.018G072101 Populus trichocarpa HOM05D008584 ORTHO05D010813 7.3e-06 53.9 44 50.0
Atru.chr1.4181 Acer truncatum HOM05D001415 ORTHO05D001075 9.5e-06 53.5 36 61.1
Gohir.A10G049600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 9.5e-06 53.5 35 60.0
Potri.003G073900 Populus trichocarpa HOM05D001415 ORTHO05D001075 9.5e-06 53.5 56 44.6


User provided reference genes

Program Settings