Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p01240 Brassica napus HOM05D000459 ORTHO05D041230 4.3e-86 321.2 158 100.0
BraA04t15843Z Brassica rapa HOM05D000459 ORTHO05D041230 2.0e-51 206.1 100 100.0
Sp5g02190 Schrenkiella parvula HOM05D000459 ORTHO05D000798 5.6e-17 91.7 85 60.0
Thhalv10006041m.g Eutrema salsugineum HOM05D000459 ORTHO05D000798 1.2e-16 90.5 85 58.8
BcaC07g42660 Brassica carinata HOM05D000459 ORTHO05D000798 2.1e-16 89.7 85 58.8
BcaC07g40623 Brassica carinata HOM05D000459 ORTHO05D000798 2.8e-16 89.4 85 58.8
C08p36060 Brassica napus HOM05D000459 ORTHO05D000798 2.8e-16 89.4 85 58.8
BolC8t51186H Brassica oleracea HOM05D000459 ORTHO05D000798 2.8e-16 89.4 85 58.8
BraA09t40750Z Brassica rapa HOM05D000459 ORTHO05D000798 2.8e-16 89.4 85 58.8
Aa31LG10G15260 Aethionema arabicum HOM05D000459 ORTHO05D000798 8.1e-16 87.8 85 57.6
Carub.0230s0001 Capsella rubella HOM05D000459 ORTHO05D000798 1.1e-15 87.4 85 56.5
CARHR171490 Cardamine hirsuta HOM05D000459 ORTHO05D000798 2.3e-15 86.3 85 55.3
AL5G43430 Arabidopsis lyrata HOM05D000459 ORTHO05D000798 4.0e-15 85.5 85 55.3
AT3G61180 Arabidopsis thaliana HOM05D000459 ORTHO05D000798 4.0e-15 85.5 85 55.3
THA.LOC104817275 Tarenaya hassleriana HOM05D000459 ORTHO05D000798 3.7e-13 79.0 85 49.4
BcaC02g12185 Brassica carinata HOM05D000459 ORTHO05D000798 4.9e-13 78.6 85 50.6
BraA04t18862Z Brassica rapa HOM05D000087 ORTHO05D000798 4.9e-13 78.6 85 49.4
BcaC02g07050 Brassica carinata HOM05D000459 ORTHO05D000798 6.4e-13 78.2 85 49.4
BcaC02g07071 Brassica carinata HOM05D000459 ORTHO05D000798 6.4e-13 78.2 85 49.4
A04p34000 Brassica napus HOM05D002904 ORTHO05D003206 6.4e-13 78.2 85 49.4
C04p06680 Brassica napus HOM05D000459 ORTHO05D000798 6.4e-13 78.2 85 49.4
C04p71810 Brassica napus HOM05D000087 ORTHO05D000439 6.4e-13 78.2 85 49.4
BolC4t22290H Brassica oleracea HOM05D000459 ORTHO05D000798 6.4e-13 78.2 85 49.4
Sp4g27830 Schrenkiella parvula HOM05D000459 ORTHO05D000798 6.4e-13 78.2 85 49.4
AL4G44950 Arabidopsis lyrata HOM05D000459 ORTHO05D000798 1.1e-12 77.4 85 48.2
A05p05750 Brassica napus HOM05D000459 ORTHO05D000798 1.1e-12 77.4 85 48.2
CARHR141030 Cardamine hirsuta HOM05D000459 ORTHO05D000798 1.1e-12 77.4 85 48.2
BolC4t28679H Brassica oleracea HOM05D000087 ORTHO05D000798 1.4e-12 77.0 85 49.4
Carub.0004s2846 Capsella rubella HOM05D000459 ORTHO05D000798 1.9e-12 76.6 85 48.2
Aa31LG1G27210 Aethionema arabicum HOM05D000459 ORTHO05D000798 7.1e-12 74.7 85 47.1
FvH4_3g08230 Fragaria vesca HOM05D000459 ORTHO05D000798 2.1e-08 63.2 85 38.8
Prupe.4G056500 Prunus persica HOM05D000459 ORTHO05D000798 3.6e-08 62.4 85 38.8
CANSAT35G0596 Cannabis sativa HOM05D000459 ORTHO05D000798 8.1e-08 61.2 87 39.1
RcHm_v2.0_Chr5g0009921 Rosa chinensis HOM05D000459 ORTHO05D000798 1.1e-07 60.8 85 37.6
SGA_v2.0_scaffold277G46686 Striga asiatica HOM05D000459 ORTHO05D000798 1.1e-07 60.8 85 37.6
MD05G1306100 Malus domestica HOM05D000459 ORTHO05D000798 1.4e-07 60.5 85 36.5
FAN21G2806 Fragaria x ananassa HOM05D000459 ORTHO05D000798 1.8e-07 60.1 85 38.8
FAN25G1326 Fragaria x ananassa HOM05D000459 ORTHO05D000798 1.8e-07 60.1 85 38.8
GSVIVG01027503001 Vitis vinifera HOM05D000459 ORTHO05D000798 1.8e-07 60.1 85 38.8
MD07G1126800 Malus domestica HOM05D000459 ORTHO05D000798 2.3e-07 59.7 84 39.3
Ciclev10020664m.g Citrus clementina HOM05D000459 ORTHO05D000798 3.1e-07 59.3 85 40.0
DCAR_006912 Daucus carota HOM05D000459 ORTHO05D000798 3.1e-07 59.3 85 40.0
Nitab4.5_0003865g0040 Nicotiana tabacum HOM05D000459 ORTHO05D000798 3.1e-07 59.3 85 37.6
QL08p050159 Quercus lobata HOM05D000459 ORTHO05D000798 3.1e-07 59.3 85 35.3
vmacro13327 Vaccinium macrocarpon HOM05D000459 ORTHO05D000798 3.1e-07 59.3 85 38.8
CSS0032938 Camellia sinensis var. sinensis HOM05D000459 ORTHO05D000798 4.0e-07 58.9 85 38.8
Dinv32436 Davidia involucrata HOM05D000459 ORTHO05D000798 4.0e-07 58.9 85 38.8
FAN16G0169 Fragaria x ananassa HOM05D000459 ORTHO05D000798 4.0e-07 58.9 85 38.8
Hma1.2p1_0033F.1_g020490 Hydrangea macrophylla HOM05D000459 ORTHO05D000798 4.0e-07 58.9 85 37.6
Sc02g0002170 Simmondsia chinensis HOM05D000459 ORTHO05D000798 4.0e-07 58.9 85 40.0
Cfa004202 Carpinus fangiana HOM05D000459 ORTHO05D000798 6.8e-07 58.2 85 37.6
Cc02_g37400 Coffea canephora HOM05D000459 ORTHO05D000798 6.8e-07 58.2 85 37.6
Peaxi162Scf00959g00414 Petunia axillaris HOM05D000459 ORTHO05D000798 6.8e-07 58.2 85 36.5
AUR62022754 Chenopodium quinoa HOM05D000459 ORTHO05D000798 8.9e-07 57.8 85 37.6
MSTRG.20805 Avicennia marina HOM05D000459 ORTHO05D000798 1.2e-06 57.4 87 35.6
CSS0036091 Camellia sinensis var. sinensis HOM05D000459 ORTHO05D000798 1.2e-06 57.4 85 36.5
MELO3C014022.2 Cucumis melo HOM05D000459 ORTHO05D000798 1.2e-06 57.4 85 38.8
Peaxi162Scf00021g01017 Petunia axillaris HOM05D000459 ORTHO05D000798 1.2e-06 57.4 85 37.6
SGA_v2.0_scaffold95G28859 Striga asiatica HOM05D000459 ORTHO05D000798 1.2e-06 57.4 85 36.5
Thecc.01G366200 Theobroma cacao HOM05D000459 ORTHO05D000798 1.2e-06 57.4 85 38.8
Haze_15207 Corylus avellana HOM05D000459 ORTHO05D000798 1.5e-06 57.0 85 36.5
Solyc01g091600.4 Solanum lycopersicum HOM05D000459 ORTHO05D000798 1.5e-06 57.0 85 36.5
Sopen01g037370 Solanum pennellii HOM05D000459 ORTHO05D000798 1.5e-06 57.0 85 36.5
PGSC0003DMG400027772 Solanum tuberosum HOM05D000459 ORTHO05D000798 1.5e-06 57.0 85 36.5
Actinidia12719 Actinidia chinensis HOM05D000459 ORTHO05D000798 2.0e-06 56.6 85 36.5
MD10G1285100 Malus domestica HOM05D000459 ORTHO05D000798 2.0e-06 56.6 85 35.3
Nitab4.5_0000258g0300 Nicotiana tabacum HOM05D000459 ORTHO05D000798 2.0e-06 56.6 85 36.5
QL12p017564 Quercus lobata HOM05D000459 ORTHO05D000798 2.0e-06 56.6 78 41.0
Solyc05g051040.4 Solanum lycopersicum HOM05D000459 ORTHO05D000798 2.0e-06 56.6 85 37.6
Sopen05g029490 Solanum pennellii HOM05D000459 ORTHO05D000798 2.0e-06 56.6 85 37.6
CsaV3_3G003540 Cucumis sativus L. HOM05D000459 ORTHO05D000798 2.6e-06 56.2 85 37.6
ClCG05G001800 Citrullus lanatus HOM05D000459 ORTHO05D000798 3.4e-06 55.8 85 36.5
Dinv38995 Davidia involucrata HOM05D000459 ORTHO05D000798 3.4e-06 55.8 85 35.3
ECA236G5145 Erigeron canadensis HOM05D000459 ORTHO05D000798 3.4e-06 55.8 85 36.5
Lj9A578G59 Lonicera japonica HOM05D000459 ORTHO05D000798 3.4e-06 55.8 85 37.6
CsaV3_3G009200 Cucumis sativus L. HOM05D000459 ORTHO05D000798 4.4e-06 55.5 85 37.6
Duzib133G0664 Durio zibethinus HOM05D000459 ORTHO05D000798 4.4e-06 55.5 85 37.6
Gohir.A03G018201 Gossypium hirsutum HOM05D000459 ORTHO05D000798 4.4e-06 55.5 85 40.0
HanXRQChr06g0169761 Helianthus annuus HOM05D000459 ORTHO05D000798 4.4e-06 55.5 85 36.5
Haze_08932 Corylus avellana HOM05D000459 ORTHO05D000798 5.8e-06 55.1 85 38.8
DCAR_004666 Daucus carota HOM05D000459 ORTHO05D000798 5.8e-06 55.1 85 34.1
Lsat_1_v5_gn_7_5561 Lactuca sativa HOM05D000459 ORTHO05D000798 5.8e-06 55.1 85 36.5
Potri.002G155200 Populus trichocarpa HOM05D000459 ORTHO05D000798 5.8e-06 55.1 85 37.6
PGR031G0719 Punica granatum HOM05D000459 ORTHO05D000798 5.8e-06 55.1 87 35.6
CANSAT56G1484 Cannabis sativa HOM05D000459 ORTHO05D000798 7.6e-06 54.7 85 36.5
Cfa012118 Carpinus fangiana HOM05D000459 ORTHO05D000798 7.6e-06 54.7 85 37.6
Manes.01G260900 Manihot esculenta HOM05D000459 ORTHO05D000798 7.6e-06 54.7 85 35.3
Oeu053299.3 Olea europaea HOM05D000459 ORTHO05D000798 7.6e-06 54.7 85 35.3
Potri.014G075000 Populus trichocarpa HOM05D000459 ORTHO05D000798 7.6e-06 54.7 85 37.6
Rhsim07G0020100 Rhododendron simsii HOM05D000459 ORTHO05D000798 7.6e-06 54.7 85 34.1
PGSC0003DMG400006990 Solanum tuberosum HOM05D000459 ORTHO05D000798 7.6e-06 54.7 85 36.5
CiPaw.01G055300 Carya illinoinensis HOM05D000459 ORTHO05D000798 9.9e-06 54.3 85 35.3
COL.COLO4_12609 Corchorus olitorius HOM05D000459 ORTHO05D000798 9.9e-06 54.3 85 34.1
Oeu058609.1 Olea europaea HOM05D000459 ORTHO05D000798 9.9e-06 54.3 85 35.3


User provided reference genes

Program Settings