Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p60360 Brassica napus HOM05D005762 ORTHO05D006823 9.8e-83 310.5 203 100.0
C07p58230 Brassica napus HOM05D000058 ORTHO05D000077 1.5e-70 270.0 186 93.5
BolC7t46281H Brassica oleracea HOM05D000058 ORTHO05D000077 1.5e-70 270.0 186 93.5
BcaNung02738 Brassica carinata HOM05D005762 ORTHO05D006823 3.7e-66 255.4 196 73.0
BcaC01g01136 Brassica carinata HOM05D005762 ORTHO05D006823 1.2e-59 233.8 186 88.7
C03p88490 Brassica napus HOM05D005762 ORTHO05D006823 1.2e-59 233.8 186 80.6
BcaNung01558 Brassica carinata HOM05D005762 ORTHO05D006823 1.5e-59 233.4 202 76.2
BcaB03g12662 Brassica carinata HOM05D005762 ORTHO05D006823 2.0e-59 233.0 186 69.9
BraA08t33867Z Brassica rapa HOM05D005762 ORTHO05D006823 4.4e-59 231.9 186 77.4
BraA03t15075Z Brassica rapa HOM05D005762 ORTHO05D006823 7.6e-59 231.1 163 98.8
Sp7g28690 Schrenkiella parvula HOM05D005762 ORTHO05D006823 9.9e-59 230.7 186 69.9
CARHR238660 Cardamine hirsuta HOM05D005762 ORTHO05D006823 1.7e-58 229.9 189 70.9
A08p19060 Brassica napus HOM05D005762 ORTHO05D006823 1.5e-54 216.9 214 67.3
AT4G30820 Arabidopsis thaliana HOM05D005762 ORTHO05D006823 2.4e-52 209.5 186 62.4
THA.LOC104814737 Tarenaya hassleriana HOM05D005762 ORTHO05D006823 4.4e-51 205.3 186 60.2
Carub.0007s0975 Capsella rubella HOM05D005762 ORTHO05D006823 1.1e-49 200.7 186 61.3
Manes.14G112900 Manihot esculenta HOM05D005762 ORTHO05D006823 1.8e-39 166.8 186 52.2
Gohir.D12G082500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 3.9e-39 165.6 188 49.5
Prupe.7G266400 Prunus persica HOM05D005762 ORTHO05D006823 5.1e-39 165.2 190 49.5
Gorai.008G090500 Gossypium raimondii HOM05D005762 ORTHO05D006823 8.7e-39 164.5 192 48.4
Gohir.A12G083500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 1.1e-38 164.1 187 49.2
Sed0007428 Sechium edule HOM05D005762 ORTHO05D006823 1.5e-38 163.7 188 48.4
Duzib147G0575 Durio zibethinus HOM05D005762 ORTHO05D006823 1.9e-38 163.3 192 47.9
COL.COLO4_27292 Corchorus olitorius HOM05D005762 ORTHO05D006823 2.5e-38 162.9 192 46.9
Sed0006648 Sechium edule HOM05D005762 ORTHO05D006823 2.5e-38 162.9 189 47.6
CANSAT11G0529 Cannabis sativa HOM05D005762 ORTHO05D006823 5.6e-38 161.8 190 64.7
Atru.chr7.1163 Acer truncatum HOM05D005762 ORTHO05D006823 7.4e-38 161.4 191 47.1
CiPaw.16G107100 Carya illinoinensis HOM05D005762 ORTHO05D006823 7.4e-38 161.4 191 49.7
ClCG06G012630 Citrullus lanatus HOM05D005762 ORTHO05D006823 3.7e-37 159.1 188 46.3
Lj2g0011355 Lotus japonicus HOM05D005762 ORTHO05D006823 4.8e-37 158.7 186 48.4
Thecc.01G095900 Theobroma cacao HOM05D005762 ORTHO05D006823 1.4e-36 157.1 192 44.8
FvH4_1g00560 Fragaria vesca HOM05D005762 ORTHO05D006823 1.8e-36 156.8 189 54.0
Lalb_Chr05g0215351 Lupinus albus HOM05D005762 ORTHO05D006823 4.0e-36 155.6 190 46.8
BolC3t21157H Brassica oleracea HOM05D005762 ORTHO05D006823 9.0e-36 154.5 149 75.2
Lalb_Chr16g0380631 Lupinus albus HOM05D005762 ORTHO05D006823 9.0e-36 154.5 192 47.4
Ciclev10009604m.g Citrus clementina HOM05D005762 ORTHO05D006823 1.5e-35 153.7 190 45.8
FAN26G0640 Fragaria x ananassa HOM05D005762 ORTHO05D006823 1.5e-35 153.7 189 54.0
TWI63G0575 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 1.5e-35 153.7 194 46.4
MD15G1148500 Malus domestica HOM05D005762 ORTHO05D006823 2.0e-35 153.3 192 57.3
Psat1g057520 Pisum sativum HOM05D005762 ORTHO05D006823 2.0e-35 153.3 189 48.1
GSVIVG01023684001 Vitis vinifera HOM05D005762 ORTHO05D006823 2.6e-35 152.9 191 46.6
Cpa.g.sc199.22 Carica papaya HOM05D005762 ORTHO05D006823 1.0e-34 151.0 175 56.0
arahy.Tifrunner.gnm1.ann1.0D8FTQ Arachis hypogaea HOM05D005762 ORTHO05D006823 1.3e-34 150.6 189 46.0
arahy.Tifrunner.gnm1.ann1.3SV7H4 Arachis hypogaea HOM05D005762 ORTHO05D006823 1.3e-34 150.6 189 46.0
PGR102G1062 Punica granatum HOM05D005762 ORTHO05D006823 1.3e-34 150.6 189 48.7
TWI34G1522 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 1.3e-34 150.6 194 45.4
Phvul.004G044600 Phaseolus vulgaris HOM05D005762 ORTHO05D006823 1.7e-34 150.2 190 46.8
RcHm_v2.0_Chr2g0085191 Rosa chinensis HOM05D005762 ORTHO05D006823 1.7e-34 150.2 189 55.6
Eucgr.C02513 Eucalyptus grandis HOM05D005762 ORTHO05D006823 2.9e-34 149.4 188 43.1
Eucgr.L01546 Eucalyptus grandis HOM05D005762 ORTHO05D006823 2.9e-34 149.4 188 43.1
Peaxi162Scf00765g00313 Petunia axillaris HOM05D005762 ORTHO05D006823 1.4e-33 147.1 188 45.7
QL02p094110 Quercus lobata HOM05D005762 ORTHO05D006823 1.4e-33 147.1 191 50.8
Sabra06G0137900 Salix brachista HOM05D005762 ORTHO05D006823 2.5e-33 146.4 186 46.2
TPR.G14135 Trifolium pratense HOM05D005762 ORTHO05D006823 2.5e-33 146.4 188 50.5
Dinv42823 Davidia involucrata HOM05D005762 ORTHO05D006823 3.2e-33 146.0 192 44.8
Dinv43277 Davidia involucrata HOM05D005762 ORTHO05D006823 3.2e-33 146.0 192 44.8
HanXRQChr03g0066031 Helianthus annuus HOM05D005762 ORTHO05D006823 3.2e-33 146.0 191 46.1
MELO3C010201.2 Cucumis melo HOM05D005762 ORTHO05D006823 4.2e-33 145.6 188 45.2
Thhalv10026542m.g Eutrema salsugineum HOM05D005762 ORTHO05D006823 4.2e-33 145.6 140 63.6
Nitab4.5_0000032g0060 Nicotiana tabacum HOM05D005762 ORTHO05D006823 4.2e-33 145.6 189 46.0
HPP92_021390 Vanilla planifolia HOM05D005762 ORTHO05D006823 5.5e-33 145.2 201 43.8
Glyma.19G036900 Glycine max HOM05D005762 ORTHO05D006823 7.1e-33 144.8 190 46.3
Medtr6g006900 Medicago truncatula HOM05D005762 ORTHO05D006823 7.1e-33 144.8 188 49.5
CDE06G1965 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 1.2e-32 144.1 192 43.2
CSS0014952 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 2.1e-32 143.3 186 44.6
HanXRQChr09g0244521 Helianthus annuus HOM05D005762 ORTHO05D006823 2.1e-32 143.3 190 44.7
TAR625G0504 Trochodendron aralioides HOM05D005762 ORTHO05D006823 2.7e-32 142.9 196 42.3
unitig_0.g206 Utricularia gibba HOM05D005762 ORTHO05D006823 2.7e-32 142.9 185 44.9
Lsat_1_v5_gn_7_49601 Lactuca sativa HOM05D005762 ORTHO05D006823 3.5e-32 142.5 190 44.7
DCAR_014801 Daucus carota HOM05D005762 ORTHO05D006823 1.0e-31 141.0 187 44.4
Migut.C01281 Erythranthe guttata HOM05D005762 ORTHO05D006823 1.0e-31 141.0 190 45.8
MBI02_g32399_MAGBIO Magnolia biondii HOM05D005762 ORTHO05D006823 1.0e-31 141.0 199 49.2
CDE02G2562 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 1.3e-31 140.6 192 43.2
CSS0036647 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 1.8e-31 140.2 177 46.3
Sopen04g027270 Solanum pennellii HOM05D005762 ORTHO05D006823 2.3e-31 139.8 189 42.9
PGSC0003DMG400024111 Solanum tuberosum HOM05D005762 ORTHO05D006823 3.0e-31 139.4 189 42.9
Aqoxy6G02656 Aquilegia oxysepala HOM05D005762 ORTHO05D006823 3.9e-31 139.0 195 41.5
unitig_60.g25712 Utricularia gibba HOM05D005762 ORTHO05D006823 3.9e-31 139.0 183 47.0
Solyc04g071310.3 Solanum lycopersicum HOM05D005762 ORTHO05D006823 5.1e-31 138.7 189 42.9
SalBow7G3475 Salvia bowleyana HOM05D005762 ORTHO05D006823 6.7e-31 138.3 190 44.7
SEGI_01916 Sequoiadendron giganteum HOM05D005762 ORTHO05D006823 8.7e-31 137.9 185 43.2
PSO761G0310 Papaver somniferum HOM05D005762 ORTHO05D006823 1.1e-30 137.5 191 44.5
Potri.006G180900 Populus trichocarpa HOM05D005762 ORTHO05D006823 1.1e-30 137.5 181 44.2
SGA_v2.0_scaffold118G32537 Striga asiatica HOM05D005762 ORTHO05D006823 1.1e-30 137.5 192 43.2
AL7G21310 Arabidopsis lyrata HOM05D005762 ORTHO05D006823 1.5e-30 137.1 141 58.2
MSTRG.25456 Avicennia marina HOM05D005762 ORTHO05D006823 1.5e-30 137.1 194 44.3
Cc00_g06610 Coffea canephora HOM05D005762 ORTHO05D006823 1.5e-30 137.1 195 45.6
Hma1.2p1_0222F.1_g093870 Hydrangea macrophylla HOM05D005762 ORTHO05D006823 1.9e-30 136.7 192 42.7
DCAR_019992 Daucus carota HOM05D005762 ORTHO05D006823 2.5e-30 136.3 187 41.2
vmacro06054 Vaccinium macrocarpon HOM05D005762 ORTHO05D006823 5.7e-30 135.2 189 46.0
Ca_04188_v3 Cicer arietinum L. HOM05D005762 ORTHO05D006823 7.4e-30 134.8 188 46.8
Actinidia24370 Actinidia chinensis HOM05D000058 ORTHO05D000077 1.3e-29 134.0 204 44.6
CAN.G268.6 Capsicum annuum HOM05D005762 ORTHO05D006823 1.3e-29 134.0 184 43.5
Sabra18G0088700 Salix brachista HOM05D000058 ORTHO05D000077 3.7e-29 132.5 174 44.3
Rhsim01G0024500 Rhododendron simsii HOM05D005762 ORTHO05D006823 8.2e-29 131.3 183 44.3
ATR0767G248 Amborella trichopoda HOM05D005762 ORTHO05D006823 1.4e-28 130.6 194 41.2
Potri.018G103200 Populus trichocarpa HOM05D005762 ORTHO05D006823 2.4e-28 129.8 188 44.7
Nn8g40046 Nelumbo nucifera HOM05D005762 ORTHO05D006823 4.1e-28 129.0 199 41.2
PSO357G0319 Papaver somniferum HOM05D005762 ORTHO05D006823 4.1e-28 129.0 191 41.4
VMungo1215G2009 Vigna mungo HOM05D005762 ORTHO05D006823 9.0e-28 127.9 168 43.5
PSO170G6399 Papaver somniferum HOM05D005762 ORTHO05D006823 2.0e-27 126.7 191 40.8
Zm00001eb215170 Zea mays HOM05D005762 ORTHO05D006823 2.0e-27 126.7 195 41.5
Zm00001eb375400 Zea mays HOM05D005762 ORTHO05D006823 2.0e-27 126.7 195 41.5
Lj2g0017040 Lotus japonicus HOM05D005762 ORTHO05D006823 3.4e-27 125.9 198 39.9
AagrBONN_evm.TU.Sc2ySwM_344.3285 Anthoceros agrestis HOM05D005762 ORTHO05D006823 4.5e-27 125.6 187 38.5
Os11g0473100 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 4.5e-27 125.6 180 41.7
Os06g0171700 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 8.4e-26 121.3 183 42.1
THA.LOC104804493 Tarenaya hassleriana HOM05D005762 ORTHO05D006823 1.9e-25 120.2 133 52.6
Haze_19144 Corylus avellana HOM05D005762 ORTHO05D006823 4.6e-24 115.5 186 40.3
SHI02837 Sapria himalayana HOM05D005762 ORTHO05D006823 7.9e-24 114.8 187 39.6
Mapoly0025s0086 Marchantia polymorpha HOM05D005762 ORTHO05D006823 8.7e-23 111.3 188 35.6
ECA240G2400 Erigeron canadensis HOM05D006258 ORTHO05D007961 1.6e-21 107.1 172 41.3
SMO356G0316 Selaginella moellendorffii HOM05D005762 ORTHO05D006823 2.8e-21 106.3 186 36.6
CBR_g45648 Chara braunii HOM05D005762 ORTHO05D006823 3.7e-21 105.9 202 37.6
Pp3c7_18190 Physcomitrium patens HOM05D005762 ORTHO05D006823 6.3e-21 105.1 183 34.4
Oeu026957.1 Olea europaea HOM05D005762 ORTHO05D006823 4.1e-20 102.4 119 49.6
SGA_v2.0_scaffold69G23111 Striga asiatica HOM05D005762 ORTHO05D006823 4.1e-20 102.4 212 35.8
Lj9A721G60 Lonicera japonica HOM05D005762 ORTHO05D006823 1.0e-18 97.8 146 42.5
EL10Ac8g18914 Beta vulgaris HOM05D005762 ORTHO05D006823 2.2e-18 96.7 83 61.4
AUR62025367 Chenopodium quinoa HOM05D005762 ORTHO05D006823 2.2e-18 96.7 83 60.2
AUR62028383 Chenopodium quinoa HOM05D005762 ORTHO05D006823 5.0e-18 95.5 83 59.0
CBR_g3032 Chara braunii HOM05D005762 ORTHO05D006823 6.5e-18 95.1 90 55.6
SMO004G0001 Selaginella moellendorffii HOM05D028982 ORTHO05D006823 8.5e-18 94.7 74 62.2
vmacro13053 Vaccinium macrocarpon HOM05D005762 ORTHO05D006823 4.2e-17 92.4 74 63.5
CsaV3_1G029180 Cucumis sativus L. HOM05D005762 ORTHO05D006823 2.1e-16 90.1 59 72.9
Dinv41344 Davidia involucrata HOM05D005762 ORTHO05D006823 4.6e-16 89.0 146 37.7
Rhsim03G0259100 Rhododendron simsii HOM05D005762 ORTHO05D006823 1.4e-15 87.4 140 40.7
SGA_v2.0_scaffold63G21769 Striga asiatica HOM05D005762 ORTHO05D006823 5.1e-15 85.5 88 55.7
Sc18g0003110 Simmondsia chinensis HOM05D005762 ORTHO05D006823 1.3e-13 80.9 143 35.7
MCO02G015 Micromonas commoda HOM05D005762 ORTHO05D006823 5.3e-12 75.5 81 49.4
Rhsim01G0060600 Rhododendron simsii HOM05D005762 ORTHO05D006823 3.2e-09 66.2 110 44.5
Cre16.g672753 Chlamydomonas reinhardtii HOM05D005762 ORTHO05D006823 7.2e-09 65.1 81 45.7
Oeu064081.1 Olea europaea HOM05D005762 ORTHO05D006823 7.2e-09 65.1 54 63.0
PSO357G0231 Papaver somniferum HOM05D005762 ORTHO05D006823 2.1e-08 63.5 133 34.6
Aa31LG2G19570 Aethionema arabicum HOM05D005762 ORTHO05D006823 1.1e-06 57.8 47 63.8
Nitab4.5_0008759g0010 Nicotiana tabacum HOM05D005762 ORTHO05D006823 3.3e-06 56.2 39 66.7
Cfa020788 Carpinus fangiana HOM05D005762 ORTHO05D006823 4.4e-06 55.8 41 56.1


User provided reference genes

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