Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p55220 Brassica napus HOM05D005319 ORTHO05D041784 1.8e-34 148.7 75 100.0
BraA03t14581Z Brassica rapa HOM05D005319 ORTHO05D041784 1.8e-34 148.7 75 100.0
BcaNung06598 Brassica carinata HOM05D005319 ORTHO05D010222 3.6e-14 81.3 57 71.9
Sp7g22260 Schrenkiella parvula HOM05D005319 ORTHO05D006632 2.6e-12 75.1 45 82.2
CARHR231700 Cardamine hirsuta HOM05D005319 ORTHO05D006632 5.7e-12 73.9 45 80.0
BcaC06g32892 Brassica carinata HOM05D008164 ORTHO05D010222 7.5e-12 73.6 45 80.0
Thhalv10024416m.g Eutrema salsugineum HOM05D005319 ORTHO05D006632 9.7e-12 73.2 45 80.0
A01p15600 Brassica napus HOM05D005319 ORTHO05D006632 1.3e-11 72.8 42 85.7
C01p19580 Brassica napus HOM05D005319 ORTHO05D006632 1.3e-11 72.8 42 85.7
BraA01t01501Z Brassica rapa HOM05D005319 ORTHO05D006632 1.3e-11 72.8 42 85.7
AT4G24270 Arabidopsis thaliana HOM05D005319 ORTHO05D006632 1.7e-11 72.4 45 77.8
Carub.0007s1678 Capsella rubella HOM05D005319 ORTHO05D006632 2.2e-11 72.0 45 77.8
BcaC09g50887 Brassica carinata HOM05D005319 ORTHO05D006632 2.8e-11 71.6 42 83.3
BcaNung01135 Brassica carinata HOM05D005319 ORTHO05D006632 2.8e-11 71.6 42 83.3
Aa31LG7G10320 Aethionema arabicum HOM05D005319 ORTHO05D006632 3.7e-11 71.2 42 83.3
AL7G28980 Arabidopsis lyrata HOM05D005319 ORTHO05D006632 4.8e-11 70.9 45 75.6
BolC1t01883H Brassica oleracea HOM05D005319 ORTHO05D006632 8.3e-11 70.1 42 81.0
PGR142G1786 Punica granatum HOM05D005319 ORTHO05D006632 8.3e-11 70.1 42 78.6
Gohir.D05G110000 Gossypium hirsutum HOM05D005319 ORTHO05D006632 3.1e-10 68.2 42 73.8
Gorai.009G114100 Gossypium raimondii HOM05D005319 ORTHO05D006632 3.1e-10 68.2 42 73.8
Ciclev10000238m.g Citrus clementina HOM05D005319 ORTHO05D006632 7.0e-10 67.0 41 75.6
Dinv29683 Davidia involucrata HOM05D005319 ORTHO05D006632 1.2e-09 66.2 46 71.7
Gohir.A05G109700 Gossypium hirsutum HOM05D005319 ORTHO05D006632 2.0e-09 65.5 42 71.4
Gohir.D10G083500 Gossypium hirsutum HOM05D005319 ORTHO05D006632 3.5e-09 64.7 42 71.4
Gorai.011G090800 Gossypium raimondii HOM05D005319 ORTHO05D006632 3.5e-09 64.7 42 71.4
THA.LOC104806623 Tarenaya hassleriana HOM05D005319 ORTHO05D006632 3.5e-09 64.7 45 66.7
Duzib192G0868 Durio zibethinus HOM05D005319 ORTHO05D006632 4.5e-09 64.3 42 71.4
FvH4_5g27610 Fragaria vesca HOM05D005319 ORTHO05D006632 7.7e-09 63.5 47 66.0
MD15G1443600 Malus domestica HOM05D005319 ORTHO05D006632 7.7e-09 63.5 49 63.3
Lj5g0014697 Lotus japonicus HOM05D005319 ORTHO05D006632 1.0e-08 63.2 45 64.4
Medtr8g015930 Medicago truncatula HOM05D005319 ORTHO05D006632 1.0e-08 63.2 45 66.7
SHI04990 Sapria himalayana HOM05D005319 ORTHO05D006632 1.0e-08 63.2 42 73.8
FAN04G2290 Fragaria x ananassa HOM05D005319 ORTHO05D006632 1.3e-08 62.8 42 71.4
FAN13G2205 Fragaria x ananassa HOM05D005319 ORTHO05D006632 1.3e-08 62.8 42 71.4
FAN18G0588 Fragaria x ananassa HOM05D005319 ORTHO05D006632 1.3e-08 62.8 42 71.4
Prupe.1G586100 Prunus persica HOM05D005319 ORTHO05D006632 1.3e-08 62.8 49 63.3
Thecc.06G020300 Theobroma cacao HOM05D005319 ORTHO05D006632 2.2e-08 62.0 42 69.0
TAR628G0438 Trochodendron aralioides HOM05D005319 ORTHO05D006632 2.2e-08 62.0 60 51.7
MD08G1248800 Malus domestica HOM05D005319 ORTHO05D006632 2.9e-08 61.6 49 61.2
vmacro19823 Vaccinium macrocarpon HOM05D005319 ORTHO05D006632 3.8e-08 61.2 47 63.8
CiPaw.05G159200 Carya illinoinensis HOM05D005319 ORTHO05D006632 5.0e-08 60.8 45 62.2
ECA240G4281 Erigeron canadensis HOM05D005319 ORTHO05D006632 5.0e-08 60.8 47 68.1
Gohir.A10G157900 Gossypium hirsutum HOM05D005319 ORTHO05D006632 5.0e-08 60.8 42 66.7
CSS0030211 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 6.5e-08 60.5 47 63.8
CSS0036760 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 6.5e-08 60.5 47 63.8
CANSAT01G0698 Cannabis sativa HOM05D005319 ORTHO05D006632 6.5e-08 60.5 45 62.2
Actinidia26200 Actinidia chinensis HOM05D005319 ORTHO05D006632 8.5e-08 60.1 47 61.7
arahy.Tifrunner.gnm1.ann1.2TW5YI Arachis hypogaea HOM05D005319 ORTHO05D006632 8.5e-08 60.1 45 62.2
Ca_00016_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 8.5e-08 60.1 42 66.7
Psat1g223960 Pisum sativum HOM05D005319 ORTHO05D006632 8.5e-08 60.1 42 66.7
TPR.G5958 Trifolium pratense HOM05D005319 ORTHO05D006632 8.5e-08 60.1 42 66.7
Atru.chr6.211 Acer truncatum HOM05D005319 ORTHO05D006632 1.1e-07 59.7 54 55.6
Cc02_g23690 Coffea canephora HOM05D005319 ORTHO05D006632 1.1e-07 59.7 47 61.7
Glyma.16G000500 Glycine max HOM05D005319 ORTHO05D006632 1.1e-07 59.7 45 62.2
Lsat_1_v5_gn_9_125320 Lactuca sativa HOM05D005319 ORTHO05D006632 1.1e-07 59.7 47 61.7
RcHm_v2.0_Chr7g0219031 Rosa chinensis HOM05D005319 ORTHO05D006632 1.1e-07 59.7 42 69.0
FvH4_5g37876 Fragaria vesca HOM05D003496 ORTHO05D003909 1.5e-07 59.3 56 58.9
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 1.5e-07 59.3 45 62.2
Phvul.006G221600 Phaseolus vulgaris HOM05D005319 ORTHO05D006632 1.5e-07 59.3 45 62.2
VMungo1127G0564 Vigna mungo HOM05D005319 ORTHO05D006632 1.5e-07 59.3 45 60.0
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 1.9e-07 58.9 47 63.8
Zm00001eb260720 Zea mays HOM05D005319 ORTHO05D006632 1.9e-07 58.9 54 55.6
Aqoxy6G00019 Aquilegia oxysepala HOM05D005319 ORTHO05D006632 2.5e-07 58.5 47 59.6
ECA247G0718 Erigeron canadensis HOM05D005319 ORTHO05D006632 2.5e-07 58.5 47 66.0
MBI03_g34263_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 2.5e-07 58.5 52 53.8
QL02p103594 Quercus lobata HOM05D005319 ORTHO05D006632 2.5e-07 58.5 42 64.3
Sc12g0006940 Simmondsia chinensis HOM05D005319 ORTHO05D006632 2.5e-07 58.5 45 60.0
DCAR_003273 Daucus carota HOM05D005319 ORTHO05D006632 3.2e-07 58.2 42 64.3
Lj5A285G49 Lonicera japonica HOM05D005319 ORTHO05D006632 3.2e-07 58.2 47 57.4
Potri.004G229732 Populus trichocarpa HOM05D005319 ORTHO05D006632 3.2e-07 58.2 42 61.9
Rhsim05G0118000 Rhododendron simsii HOM05D005319 ORTHO05D006632 3.2e-07 58.2 46 60.9
CsaV3_5G027480 Cucumis sativus L. HOM05D005319 ORTHO05D006632 5.5e-07 57.4 40 67.5
FAN08G2337 Fragaria x ananassa HOM05D003496 ORTHO05D003909 5.5e-07 57.4 41 68.3
Glyma.12G164200 Glycine max HOM05D005319 ORTHO05D006632 5.5e-07 57.4 45 60.0
Manes.07G031200 Manihot esculenta HOM05D005319 ORTHO05D006632 5.5e-07 57.4 42 66.7
Sed0027556 Sechium edule HOM05D005319 ORTHO05D006632 5.5e-07 57.4 40 67.5
HPP92_001202 Vanilla planifolia HOM05D005319 ORTHO05D006632 5.5e-07 57.4 45 57.8
Cfa004432 Carpinus fangiana HOM05D005319 ORTHO05D006632 7.2e-07 57.0 42 61.9
Haze_09972 Corylus avellana HOM05D005319 ORTHO05D006632 7.2e-07 57.0 42 61.9
HanXRQChr03g0090101 Helianthus annuus HOM05D005319 ORTHO05D006632 7.2e-07 57.0 47 61.7
CAN.G855.58 Capsicum annuum HOM05D005319 ORTHO05D006632 9.4e-07 56.6 42 64.3
GSVIVG01023136001 Vitis vinifera HOM05D005319 ORTHO05D006632 9.4e-07 56.6 42 69.0
MELO3C022920.2 Cucumis melo HOM05D005319 ORTHO05D006632 1.2e-06 56.2 40 65.0
ClCG11G000090 Citrullus lanatus HOM05D005319 ORTHO05D006632 1.6e-06 55.8 40 65.0
Sabra01G0174900 Salix brachista HOM05D005319 ORTHO05D006632 1.6e-06 55.8 41 61.0
PSO170G3892 Papaver somniferum HOM05D005319 ORTHO05D006632 2.1e-06 55.5 45 57.8
PGSC0003DMG400020717 Solanum tuberosum HOM05D005319 ORTHO05D006632 2.1e-06 55.5 42 61.9
Hma1.2p1_0052F.1_g030050 Hydrangea macrophylla HOM05D005319 ORTHO05D006632 2.7e-06 55.1 49 57.1
Nitab4.5_0003247g0020 Nicotiana tabacum HOM05D005319 ORTHO05D006632 2.7e-06 55.1 42 61.9
Peaxi162Scf00011g02012 Petunia axillaris HOM05D005319 ORTHO05D006632 2.7e-06 55.1 42 61.9
Os08g0113200 Oryza sativa ssp. japonica HOM05D005319 ORTHO05D006632 3.6e-06 54.7 47 55.3
Solyc01g102970.3 Solanum lycopersicum HOM05D005319 ORTHO05D006632 3.6e-06 54.7 43 62.8
Sopen01g045380 Solanum pennellii HOM05D005319 ORTHO05D006632 3.6e-06 54.7 43 62.8
COL.COLO4_31114 Corchorus olitorius HOM05D005319 ORTHO05D006632 4.7e-06 54.3 45 53.3
Nn5g27146 Nelumbo nucifera HOM05D005319 ORTHO05D006632 4.7e-06 54.3 42 57.1
Nitab4.5_0005164g0040 Nicotiana tabacum HOM05D005319 ORTHO05D006632 4.7e-06 54.3 41 63.4
Oeu043603.1 Olea europaea HOM05D005319 ORTHO05D006632 4.7e-06 54.3 47 53.2
PSO017G2844 Papaver somniferum HOM05D005319 ORTHO05D006632 4.7e-06 54.3 45 57.8
CDE04G1013 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 6.1e-06 53.9 47 51.1


User provided reference genes

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