Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 1.4e-249 865.9 458 100.0
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 1.3e-247 859.4 464 98.5
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 7.5e-240 833.6 458 95.6
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 3.7e-239 831.2 458 96.7
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 1.1e-235 819.7 458 94.5
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 8.3e-231 803.5 465 93.8
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 1.6e-229 799.3 458 94.1
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 8.6e-228 793.5 469 90.8
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 4.3e-227 791.2 458 92.1
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 2.9e-223 778.5 456 91.2
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 2.9e-223 778.5 456 91.2
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 4.9e-223 777.7 473 88.8
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 3.5e-221 771.5 464 88.1
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 2.6e-216 755.4 466 89.1
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 2.9e-215 751.9 464 87.9
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 3.8e-215 751.5 465 86.9
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 1.4e-214 749.6 458 88.4
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 2.4e-214 748.8 479 86.6
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 1.2e-213 746.5 458 88.6
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 2.3e-212 742.3 460 87.8
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 1.2e-200 703.4 464 83.2
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 7.6e-200 700.7 467 82.9
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.0e-191 673.7 470 77.2
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 8.5e-183 644.0 412 85.0
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 1.2e-181 640.2 474 72.2
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 1.8e-180 636.3 473 72.3
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 1.6e-178 629.8 465 73.1
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 2.8e-178 629.0 476 71.8
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 6.3e-178 627.9 473 71.5
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 2.4e-177 625.9 468 70.9
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 1.5e-176 623.2 449 76.6
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 2.0e-176 622.9 478 69.0
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 2.6e-176 622.5 490 70.0
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 5.9e-176 621.3 478 68.6
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.9e-176 621.3 468 72.0
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 1.0e-175 620.5 475 69.5
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 1.3e-175 620.2 459 71.5
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 2.2e-175 619.4 475 68.8
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 5.0e-175 618.2 477 69.4
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 2.5e-174 615.9 472 69.1
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 4.2e-174 615.1 459 70.2
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.2e-174 615.1 475 68.8
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 1.2e-173 613.6 464 70.7
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 2.7e-173 612.5 472 71.4
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 3.6e-173 612.1 469 71.0
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 3.6e-173 612.1 472 68.6
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 4.6e-173 611.7 477 70.4
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 7.9e-173 610.9 464 70.5
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.0e-172 610.5 461 74.2
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 1.4e-172 610.1 485 68.7
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 3.0e-172 609.0 479 68.7
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 3.9e-172 608.6 469 70.6
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 5.1e-172 608.2 470 68.9
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 5.1e-172 608.2 469 70.6
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 6.7e-172 607.8 464 70.7
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 8.8e-172 607.4 472 68.9
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 1.5e-171 606.7 490 67.6
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 1.5e-171 606.7 473 68.7
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 2.6e-171 605.9 469 69.5
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 2.6e-171 605.9 469 69.5
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.4e-171 605.1 468 68.4
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 5.7e-171 604.7 464 68.5
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 2.8e-170 602.4 465 69.7
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 4.8e-170 601.7 467 68.3
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 6.3e-170 601.3 463 70.2
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 1.1e-169 600.5 472 67.8
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 1.4e-169 600.1 470 68.9
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 2.4e-169 599.4 472 68.6
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 2.4e-169 599.4 472 67.6
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 1.2e-168 597.0 468 68.4
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 2.6e-168 595.9 467 67.5
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 2.6e-168 595.9 504 65.1
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 7.7e-168 594.3 462 69.9
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 7.7e-168 594.3 499 64.3
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 1.0e-167 594.0 460 68.9
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 3.8e-167 592.0 469 67.6
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 6.5e-167 591.3 524 62.8
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 1.1e-166 590.5 459 67.5
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.1e-166 590.5 459 67.5
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 1.4e-166 590.1 469 68.9
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 2.5e-166 589.3 478 67.6
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 2.5e-166 589.3 403 76.4
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 3.2e-166 589.0 481 68.0
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 5.5e-166 588.2 474 67.5
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 7.2e-166 587.8 466 68.7
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 4.7e-165 585.1 450 70.2
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 4.7e-165 585.1 468 69.0
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 6.1e-165 584.7 504 64.3
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 1.0e-164 583.9 471 69.9
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 1.0e-164 583.9 513 64.1
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.3e-164 582.8 449 67.9
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 8.8e-164 580.9 384 76.3
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 2.6e-163 579.3 459 68.4
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 2.6e-163 579.3 475 66.7
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 5.7e-163 578.2 469 68.9
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 1.7e-162 576.6 471 68.8
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 2.2e-162 576.2 463 67.0
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 3.7e-162 575.5 472 66.5
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 3.5e-160 568.9 345 80.9
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.2e-159 566.2 468 65.8
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 3.8e-159 565.5 378 74.1
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 3.8e-159 565.5 531 58.8
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 3.8e-159 565.5 464 67.0
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 6.5e-159 564.7 515 62.1
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 4.7e-157 558.5 404 72.0
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 1.0e-156 557.4 500 63.0
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 5.2e-156 555.1 492 62.8
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 1.2e-155 553.9 449 66.4
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 2.0e-155 553.1 332 82.2
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 1.8e-153 546.6 468 65.2
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 1.2e-152 543.9 431 68.0
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 2.7e-152 542.7 465 64.1
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 1.3e-151 540.4 477 63.3
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 8.5e-151 537.7 461 67.0
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 3.2e-150 535.8 482 62.4
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 6.8e-148 528.1 465 63.0
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 1.2e-147 527.3 447 62.0
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 5.7e-147 525.0 465 62.6
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 4.1e-145 518.8 427 66.0
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 2.5e-142 509.6 285 86.0
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 4.2e-142 508.8 454 58.8
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 7.2e-142 508.1 460 62.6
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 6.1e-141 505.0 279 85.7
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 1.8e-140 503.4 404 67.6
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 3.4e-139 499.2 461 62.9
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 1.3e-138 497.3 503 58.8
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 1.6e-136 490.3 331 71.6
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 7.3e-134 481.5 457 58.4
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 2.6e-131 473.0 330 68.5
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 7.5e-131 471.5 481 54.5
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 9.2e-129 464.5 395 63.3
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 4.6e-128 462.2 494 54.9
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 6.2e-125 451.8 334 68.6
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 6.4e-122 441.8 270 74.8
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 8.3e-122 441.4 428 59.1
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 4.6e-120 435.6 576 49.1
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.0e-119 434.5 360 61.9
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.7e-119 433.7 444 57.2
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 4.6e-112 409.1 467 54.2
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 5.1e-111 405.6 437 55.4
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 6.2e-101 372.1 337 55.8
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 2.4e-100 370.2 327 54.7
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.2e-98 363.6 287 64.8
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 3.2e-97 359.8 387 53.0
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 1.8e-76 290.8 260 57.7
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 1.3e-74 284.6 459 44.7
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 3.8e-58 229.9 467 40.5
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 4.8e-53 213.0 384 35.4
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 2.3e-39 167.5 237 48.5
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 5.7e-38 162.9 120 69.2
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 2.0e-35 154.5 403 32.3
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 5.7e-30 136.3 81 80.2
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 5.0e-26 123.2 169 45.0
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.7e-21 107.1 176 43.8
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 4.5e-19 100.1 103 52.4
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 1.5e-17 95.1 143 42.0
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 1.2e-14 85.5 199 36.7
Oeu061378.1 Olea europaea HOM05D004480 ORTHO05D005546 1.5e-14 85.1 187 38.5


User provided reference genes

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