Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 9.2e-146 520.4 298 100.0
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 5.6e-143 511.1 299 96.3
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 1.0e-136 490.3 302 94.7
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 2.5e-135 485.7 304 93.8
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 8.9e-133 477.2 304 92.4
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 2.4e-130 469.2 299 91.3
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 5.4e-130 468.0 299 93.3
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 7.1e-130 467.6 299 90.6
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 1.2e-129 466.8 299 90.3
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 7.8e-129 464.2 299 90.3
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 1.0e-128 463.8 299 90.6
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 2.9e-123 445.7 299 89.0
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 6.4e-123 444.5 300 87.7
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 6.4e-123 444.5 300 87.7
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 6.4e-123 444.5 300 87.7
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 6.6e-120 434.5 298 88.6
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 2.0e-116 422.9 299 80.9
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 1.7e-115 419.9 299 78.3
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 7.8e-113 411.0 299 75.9
Sp3g20420 Schrenkiella parvula HOM05D003921 ORTHO05D004394 1.1e-111 407.1 299 77.9
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 5.6e-111 404.8 299 81.6
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 2.1e-110 402.9 299 81.3
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 7.6e-108 394.4 299 73.6
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 7.1e-106 387.9 299 75.9
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 1.9e-95 353.2 301 73.1
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 1.0e-83 314.3 298 65.8
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 1.1e-82 310.8 297 63.6
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 1.8e-80 303.5 297 61.6
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 3.9e-80 302.4 297 61.3
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 6.7e-80 301.6 301 60.8
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 4.3e-79 298.9 293 59.4
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 9.7e-79 297.7 303 58.4
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 3.7e-78 295.8 301 64.8
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 3.7e-78 295.8 295 60.7
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 6.3e-78 295.0 296 60.5
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 1.1e-77 294.3 295 60.0
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 1.8e-77 293.5 295 60.0
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 4.1e-77 292.4 298 59.1
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 5.3e-77 292.0 260 62.7
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 1.2e-76 290.8 286 63.3
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 1.5e-76 290.4 262 62.6
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 5.9e-76 288.5 267 61.4
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 5.0e-75 285.4 299 58.9
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 8.5e-75 284.6 283 62.5
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 8.5e-75 284.6 300 59.7
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 5.5e-74 282.0 299 59.9
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 5.5e-74 282.0 299 59.9
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 7.2e-74 281.6 296 61.8
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 1.2e-73 280.8 303 64.7
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 2.1e-73 280.0 300 60.0
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 3.6e-73 279.3 301 62.5
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 3.6e-73 279.3 303 64.0
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 4.6e-73 278.9 297 60.9
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 4.6e-73 278.9 250 62.0
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 4.6e-73 278.9 306 55.9
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 4.6e-73 278.9 299 60.9
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 7.9e-73 278.1 266 65.4
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 1.8e-72 276.9 268 60.4
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 3.0e-72 276.2 296 60.8
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 3.9e-72 275.8 265 64.2
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 1.1e-71 274.2 300 56.3
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 1.5e-71 273.9 262 61.8
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 1.5e-71 273.9 264 64.8
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 4.3e-71 272.3 260 64.2
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.2e-70 270.0 243 67.9
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.2e-70 270.0 244 68.4
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 3.7e-70 269.2 243 68.3
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 3.7e-70 269.2 243 68.3
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 4.8e-70 268.9 260 66.5
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 6.3e-70 268.5 267 64.4
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 6.3e-70 268.5 243 68.3
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 8.2e-70 268.1 304 60.9
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 1.1e-69 267.7 298 59.1
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.4e-69 267.3 291 60.8
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 1.4e-69 267.3 265 62.3
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.8e-69 266.9 260 65.4
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.8e-69 266.9 297 57.2
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 2.4e-69 266.5 293 60.8
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 4.1e-69 265.8 306 57.8
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 4.1e-69 265.8 292 59.6
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 5.3e-69 265.4 262 59.5
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 5.3e-69 265.4 290 59.0
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.2e-68 264.2 301 53.5
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 2.2e-67 260.0 301 55.1
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 2.9e-67 259.6 303 55.1
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 3.8e-67 259.2 300 59.0
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 5.0e-67 258.8 292 59.9
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 1.1e-66 257.7 288 54.9
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 1.1e-66 257.7 259 59.1
CANSAT11G2317 Cannabis sativa HOM05D003921 ORTHO05D004394 1.4e-66 257.3 219 65.3
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 5.5e-66 255.4 261 63.6
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 9.4e-66 254.6 292 59.9
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 9.4e-66 254.6 262 62.2
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 1.6e-65 253.8 304 57.6
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 1.6e-65 253.8 291 54.6
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 2.1e-65 253.4 295 53.9
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 2.7e-65 253.1 299 58.2
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 4.7e-65 252.3 298 55.7
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 4.7e-65 252.3 298 55.7
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 2.3e-64 250.0 265 56.2
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 5.2e-64 248.8 299 57.5
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 6.7e-64 248.4 251 59.8
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 1.1e-63 247.7 275 58.5
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 2.0e-63 246.9 286 54.2
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 2.6e-63 246.5 261 61.7
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 4.4e-63 245.7 270 56.3
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 4.4e-63 245.7 294 53.1
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 5.7e-63 245.4 288 57.6
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 7.4e-63 245.0 297 53.2
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 1.3e-62 244.2 243 65.0
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 6.3e-62 241.9 314 55.1
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 3.1e-61 239.6 297 56.9
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 4.1e-61 239.2 286 52.4
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 7.7e-60 235.0 293 51.5
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 3.8e-59 232.6 277 52.0
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 3.8e-59 232.6 297 54.5
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.1e-58 231.1 244 58.6
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 2.5e-58 229.9 254 58.7
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.1e-57 226.9 306 54.6
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.7e-57 226.5 302 55.3
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 2.7e-57 226.5 298 52.7
BcaC09g49189 Brassica carinata HOM05D003921 ORTHO05D004394 2.3e-56 223.4 193 72.0
Sopen01g002090 Solanum pennellii HOM05D003921 ORTHO05D004394 3.0e-56 223.0 210 63.3
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 2.6e-55 219.9 293 53.6
Dinv22984 Davidia involucrata HOM05D003921 ORTHO05D004394 4.4e-55 219.2 300 47.0
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 8.2e-54 214.9 297 52.2
Pp3c6_25210 Physcomitrium patens HOM05D003921 ORTHO05D004394 8.2e-54 214.9 308 44.8
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 3.1e-53 213.0 298 54.0
SMO174G0035 Selaginella moellendorffii HOM05D003921 ORTHO05D004394 3.1e-53 213.0 259 49.8
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 4.1e-53 212.6 266 57.5
Os07g0475800 Oryza sativa ssp. japonica HOM05D003921 ORTHO05D004394 1.6e-52 210.7 296 55.1
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 2.0e-52 210.3 302 47.0
FAN10G0556 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.0e-52 210.3 215 63.3
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.0e-51 208.0 285 51.6
Ca_25165_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 8.5e-51 204.9 268 56.0
SHI13875 Sapria himalayana HOM05D003921 ORTHO05D004394 2.5e-50 203.4 251 50.2
Mapoly0140s0011 Marchantia polymorpha HOM05D003921 ORTHO05D004394 8.3e-46 188.3 252 45.6
CDE04G0151 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 1.9e-42 177.2 206 55.3
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 5.5e-42 175.6 279 42.7
Ah.06g188070 Amaranthus hybridus HOM05D003921 ORTHO05D004394 8.0e-41 171.8 157 66.9
Oeu019922.1 Olea europaea HOM05D003921 ORTHO05D004394 2.2e-38 163.7 251 46.6
Nn1g08099 Nelumbo nucifera HOM05D003921 ORTHO05D004394 8.3e-38 161.8 154 55.8
CBR_g18581 Chara braunii HOM05D001161 ORTHO05D000497 9.2e-37 158.3 259 44.4
HPP92_008700 Vanilla planifolia HOM05D003921 ORTHO05D004394 1.6e-36 157.5 141 59.6
PRCOL_00003036 Prasinoderma coloniale HOM05D003921 ORTHO05D004394 3.5e-36 156.4 252 41.7
AagrBONN_evm.TU.Sc2ySwM_228.1082 Anthoceros agrestis HOM05D003921 ORTHO05D004394 7.7e-36 155.2 287 38.3
MSTRG.14093 Avicennia marina HOM05D003921 ORTHO05D004394 1.7e-35 154.1 174 56.3
Ca_27419_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 6.6e-35 152.1 184 61.4
DCAR_018123 Daucus carota HOM05D003921 ORTHO05D004394 8.6e-35 151.8 263 45.6
Hund09280 Selenicereus undatus HOM05D003921 ORTHO05D004394 4.7e-33 146.0 160 58.8
Hund09282 Selenicereus undatus HOM05D003921 ORTHO05D004394 4.7e-33 146.0 160 58.8
Eucgr.K01460 Eucalyptus grandis HOM05D003921 ORTHO05D004394 6.8e-32 142.1 156 51.3
Cre07.g351750 Chlamydomonas reinhardtii HOM05D003921 ORTHO05D004394 8.9e-32 141.7 244 42.2
Nn1g01220 Nelumbo nucifera HOM05D003921 ORTHO05D004394 3.4e-31 139.8 157 50.3
Oeu019920.1 Olea europaea HOM05D003921 ORTHO05D004394 1.3e-30 137.9 283 41.0
Oeu021724.1 Olea europaea HOM05D003921 ORTHO05D004394 3.7e-30 136.3 291 39.2
MSTRG.14095 Avicennia marina HOM05D003921 ORTHO05D004394 9.2e-29 131.7 171 51.5
MSTRG.5717 Avicennia marina HOM05D003921 ORTHO05D004394 7.8e-28 128.6 193 52.8
MCO16G303 Micromonas commoda HOM05D003921 ORTHO05D004394 1.3e-27 127.9 206 40.3
RcHm_v2.0_Chr5g0027461 Rosa chinensis HOM05D003921 ORTHO05D017011 6.6e-27 125.6 141 47.5
Oeu023230.1 Olea europaea HOM05D003921 ORTHO05D004394 6.4e-22 109.0 293 33.4
Nn4g26407 Nelumbo nucifera HOM05D003921 ORTHO05D004394 8.3e-22 108.6 106 60.4
GSVIVG01018514001 Vitis vinifera HOM05D003921 ORTHO05D004394 4.1e-21 106.3 266 32.3
Actinidia25037 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.3e-19 101.3 81 64.2
ATR0564G120 Amborella trichopoda HOM05D003921 ORTHO05D004394 3.0e-19 100.1 197 39.6
Actinidia13554 Actinidia chinensis HOM05D003921 ORTHO05D004394 3.3e-18 96.7 70 70.0
Actinidia39598 Actinidia chinensis HOM05D003921 ORTHO05D004394 8.1e-17 92.0 71 63.4
Nn4g26401 Nelumbo nucifera HOM05D003921 ORTHO05D004394 4.1e-13 79.7 75 57.3
Ca_29708_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 2.1e-12 77.4 83 63.9
Actinidia31394 Actinidia chinensis HOM05D003921 ORTHO05D004394 2.7e-12 77.0 94 52.1
Ah.06g188140 Amaranthus hybridus HOM05D003921 ORTHO05D004394 6.6e-11 72.4 154 41.6
Prupe.2G115300 Prunus persica HOM05D003921 ORTHO05D004394 6.6e-11 72.4 113 50.4
CDE08G0595 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 4.3e-10 69.7 115 47.0
Dinv10307 Davidia involucrata HOM05D003921 ORTHO05D004394 4.3e-10 69.7 48 70.8
FvH4_1g22470 Fragaria vesca HOM05D003475 ORTHO05D035452 2.3e-08 63.9 59 57.6
Gohir.D12G264333 Gossypium hirsutum HOM05D003921 ORTHO05D004394 4.0e-08 63.2 246 30.1
Oeu039213.1 Olea europaea HOM05D003921 ORTHO05D004394 6.8e-08 62.4 59 64.4
Ah.06g188080 Amaranthus hybridus HOM05D003921 ORTHO05D004394 8.9e-08 62.0 97 46.4
Gorai.008G283700 Gossypium raimondii HOM05D003921 ORTHO05D004394 2.9e-06 57.0 246 29.3


User provided reference genes

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