Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p39750 Brassica napus HOM05D005732 ORTHO05D007062 1.1e-108 396.7 209 100.0
BraA03t13125Z Brassica rapa HOM05D005732 ORTHO05D007062 6.1e-104 380.9 209 97.6
BolC3t17024H Brassica oleracea HOM05D005732 ORTHO05D007062 1.1e-102 376.7 209 95.7
BcaC01g03830 Brassica carinata HOM05D005732 ORTHO05D007062 2.0e-102 375.9 209 95.2
BolC3t17097H Brassica oleracea HOM05D005732 ORTHO05D007062 2.0e-102 375.9 209 95.2
C03p48190 Brassica napus HOM05D005732 ORTHO05D007062 6.5e-98 360.9 209 92.3
BcaB04g18894 Brassica carinata HOM05D005732 ORTHO05D007062 8.8e-95 350.5 205 91.2
BcaB06g25723 Brassica carinata HOM05D005732 ORTHO05D007062 8.5e-90 334.0 207 87.4
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 1.1e-89 333.6 207 87.4
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 1.1e-89 333.6 207 87.4
Thhalv10021518m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 8.0e-88 327.4 209 84.2
AL3G29050 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 2.3e-87 325.9 211 84.4
Sp3g14670 Schrenkiella parvula HOM05D005732 ORTHO05D007062 2.6e-86 322.4 207 83.6
BraA05t22147Z Brassica rapa HOM05D005732 ORTHO05D007062 4.4e-86 321.6 207 84.5
AT3G16300 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 3.7e-85 318.5 209 82.8
Carub.0003s1605 Capsella rubella HOM05D005732 ORTHO05D007062 1.4e-84 316.6 209 82.3
BcaC05g28895 Brassica carinata HOM05D005732 ORTHO05D007062 7.0e-84 314.3 205 84.4
CARHR091510 Cardamine hirsuta HOM05D005732 ORTHO05D007062 4.7e-80 301.6 207 78.7
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 5.4e-68 261.5 206 71.8
THA.LOC104817966 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 1.1e-57 227.3 167 68.9
Thecc.06G097400 Theobroma cacao HOM05D005732 ORTHO05D007062 2.1e-43 179.9 168 55.4
COL.COLO4_30485 Corchorus olitorius HOM05D000181 ORTHO05D008575 6.6e-42 174.9 169 53.3
Haze_15828 Corylus avellana HOM05D005732 ORTHO05D007062 4.3e-41 172.2 205 47.3
Gohir.A02G118700 Gossypium hirsutum HOM05D005732 ORTHO05D007062 5.6e-41 171.8 169 53.3
CANSAT56G1056 Cannabis sativa HOM05D005732 ORTHO05D007062 7.3e-41 171.4 167 53.9
Duzib192G0605 Durio zibethinus HOM05D005732 ORTHO05D007062 9.6e-41 171.0 170 54.7
Cpa.g.c29422 Carica papaya HOM05D005732 ORTHO05D007062 1.3e-40 170.6 174 51.7
TAR383G0371 Trochodendron aralioides HOM05D005732 ORTHO05D007062 1.3e-40 170.6 176 51.7
FAN14G0018 Fragaria x ananassa HOM05D005732 ORTHO05D007062 1.6e-40 170.2 167 50.9
Cfa003665 Carpinus fangiana HOM05D005732 ORTHO05D007062 3.6e-40 169.1 205 46.8
FAN02G4216 Fragaria x ananassa HOM05D005732 ORTHO05D007062 3.6e-40 169.1 167 50.9
FvH4_6g32160 Fragaria vesca HOM05D005732 ORTHO05D007062 4.8e-40 168.7 167 50.3
TAR626G0582 Trochodendron aralioides HOM05D005732 ORTHO05D007062 6.2e-40 168.3 167 52.7
RcHm_v2.0_Chr2g0140051 Rosa chinensis HOM05D005732 ORTHO05D007062 8.1e-40 167.9 165 52.1
FAN05G5290 Fragaria x ananassa HOM05D005732 ORTHO05D007062 1.1e-39 167.5 167 50.3
Dinv37994 Davidia involucrata HOM05D005732 ORTHO05D007062 1.8e-39 166.8 167 52.1
Eucgr.F03064 Eucalyptus grandis HOM05D005732 ORTHO05D007062 4.0e-39 165.6 169 50.9
FAN09G2308 Fragaria x ananassa HOM05D005732 ORTHO05D007062 4.0e-39 165.6 170 49.4
Gorai.003G063300 Gossypium raimondii HOM05D005732 ORTHO05D007062 4.0e-39 165.6 169 50.9
Prupe.3G061300 Prunus persica HOM05D005732 ORTHO05D007062 5.3e-39 165.2 169 52.1
Lalb_Chr04g0262901 Lupinus albus HOM05D005732 ORTHO05D007062 6.9e-39 164.9 171 49.7
Manes.11G035100 Manihot esculenta HOM05D005732 ORTHO05D007062 2.0e-38 163.3 169 50.9
CiPaw.01G232900 Carya illinoinensis HOM05D005732 ORTHO05D007062 2.6e-38 162.9 167 50.9
Actinidia09002 Actinidia chinensis HOM05D005732 ORTHO05D007062 4.4e-38 162.2 197 45.7
Oeu050609.1 Olea europaea HOM05D005732 ORTHO05D007062 4.4e-38 162.2 204 43.6
TWI75G0681 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 7.6e-38 161.4 182 47.8
Cc04_g02710 Coffea canephora HOM05D005732 ORTHO05D007062 9.9e-38 161.0 171 51.5
Manes.04G132400 Manihot esculenta HOM05D005732 ORTHO05D007062 1.7e-37 160.2 169 49.1
Lj3g0008110 Lotus japonicus HOM05D005732 ORTHO05D007062 4.9e-37 158.7 167 49.1
Ciclev10026574m.g Citrus clementina HOM05D005732 ORTHO05D007062 6.4e-37 158.3 167 49.1
VMungo0331G0354 Vigna mungo HOM05D005732 ORTHO05D007062 6.4e-37 158.3 167 50.3
PSO173G0088 Papaver somniferum HOM05D005732 ORTHO05D007062 8.4e-37 157.9 169 49.1
vmacro16985 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 8.4e-37 157.9 182 45.6
Medtr8g013900 Medicago truncatula HOM05D005732 ORTHO05D007062 1.1e-36 157.5 176 47.2
Lj5A55G45 Lonicera japonica HOM05D005732 ORTHO05D007062 1.4e-36 157.1 165 52.1
Nn2g11615 Nelumbo nucifera HOM05D005732 ORTHO05D007062 1.4e-36 157.1 176 46.0
HanXRQChr09g0275891 Helianthus annuus HOM05D005732 ORTHO05D007062 1.9e-36 156.8 165 49.7
Hma1.2p1_1689F.1_g297591 Hydrangea macrophylla HOM05D005732 ORTHO05D007062 1.9e-36 156.8 174 47.7
Psat4g197440 Pisum sativum HOM05D005732 ORTHO05D007062 2.4e-36 156.4 201 44.8
Glyma.07G017000 Glycine max HOM05D005732 ORTHO05D007062 3.2e-36 156.0 167 50.3
Phvul.010G146500 Phaseolus vulgaris HOM05D005732 ORTHO05D007062 3.2e-36 156.0 167 49.1
SalBow1G6954 Salvia bowleyana HOM05D005732 ORTHO05D007062 3.2e-36 156.0 167 48.5
SalBow2G2342 Salvia bowleyana HOM05D005732 ORTHO05D007062 4.2e-36 155.6 167 48.5
CSS0002541 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 9.3e-36 154.5 165 49.7
Gohir.D03G059300 Gossypium hirsutum HOM05D005732 ORTHO05D007062 9.3e-36 154.5 169 47.9
Migut.I00910 Erythranthe guttata HOM05D005732 ORTHO05D007062 1.2e-35 154.1 167 48.5
HanXRQChr16g0501231 Helianthus annuus HOM05D005732 ORTHO05D007062 1.2e-35 154.1 177 48.0
PGR102G2433 Punica granatum HOM05D005732 ORTHO05D007062 1.2e-35 154.1 165 46.7
MSTRG.22648 Avicennia marina HOM05D005732 ORTHO05D007062 2.7e-35 152.9 204 44.6
MD09G1205900 Malus domestica HOM05D005732 ORTHO05D007062 2.7e-35 152.9 167 47.9
TWI18G0404 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 2.7e-35 152.9 169 46.7
Aqoxy7G01470 Aquilegia oxysepala HOM05D005732 ORTHO05D007062 3.5e-35 152.5 204 43.1
arahy.Tifrunner.gnm1.ann1.U1FWF5 Arachis hypogaea HOM05D005732 ORTHO05D007062 4.6e-35 152.1 167 49.1
arahy.Tifrunner.gnm1.ann1.Z2G3LM Arachis hypogaea HOM05D005732 ORTHO05D007062 4.6e-35 152.1 167 49.1
CSS0032474 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 4.6e-35 152.1 165 49.1
Potri.001G188000 Populus trichocarpa HOM05D005732 ORTHO05D007062 4.6e-35 152.1 169 47.3
AUR62031884 Chenopodium quinoa HOM05D005732 ORTHO05D007062 6.0e-35 151.8 165 49.7
MSTRG.11037 Avicennia marina HOM05D005732 ORTHO05D007062 7.8e-35 151.4 212 43.4
MBI04_g40322_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 7.8e-35 151.4 167 47.3
Potri.003G050400 Populus trichocarpa HOM05D005732 ORTHO05D007062 7.8e-35 151.4 169 47.3
Sabra03G0028400 Salix brachista HOM05D005732 ORTHO05D007062 7.8e-35 151.4 169 48.5
Sp5g35990 Schrenkiella parvula HOM05D005732 ORTHO05D007062 7.8e-35 151.4 167 46.1
CSS0006657 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 1.0e-34 151.0 195 42.1
AUR62022181 Chenopodium quinoa HOM05D005732 ORTHO05D007062 1.0e-34 151.0 165 49.7
ECA232G1272 Erigeron canadensis HOM05D000181 ORTHO05D008575 1.0e-34 151.0 166 49.4
PSO832G1217 Papaver somniferum HOM05D005732 ORTHO05D007062 1.0e-34 151.0 167 47.9
DCAR_016197 Daucus carota HOM05D005732 ORTHO05D007062 1.3e-34 150.6 165 46.7
Sc15g0001950 Simmondsia chinensis HOM05D005732 ORTHO05D007062 1.7e-34 150.2 159 49.7
Sed0001710 Sechium edule HOM05D005732 ORTHO05D007062 2.3e-34 149.8 160 49.4
GSVIVG01017014001 Vitis vinifera HOM05D005732 ORTHO05D007062 3.0e-34 149.4 144 54.2
AL2G41770 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 5.1e-34 148.7 165 46.7
EL10Ac9g22102 Beta vulgaris HOM05D005732 ORTHO05D007062 5.1e-34 148.7 165 49.7
HanXRQChr02g0032191 Helianthus annuus HOM05D005732 ORTHO05D007062 5.1e-34 148.7 189 43.4
ECA247G0174 Erigeron canadensis HOM05D005732 ORTHO05D007062 6.6e-34 148.3 168 47.6
Lsat_1_v5_gn_4_99921 Lactuca sativa HOM05D005732 ORTHO05D007062 8.7e-34 147.9 165 46.7
Atru.chr1.3497 Acer truncatum HOM05D005732 ORTHO05D007062 1.5e-33 147.1 167 46.1
AT1G79780 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 2.5e-33 146.4 165 46.7
MELO3C024451.2 Cucumis melo HOM05D005732 ORTHO05D007062 2.5e-33 146.4 174 46.0
Hund06653 Selenicereus undatus HOM05D005732 ORTHO05D007062 2.5e-33 146.4 161 47.8
CsaV3_7G035420 Cucumis sativus L. HOM05D005732 ORTHO05D007062 3.3e-33 146.0 167 47.3
Aa31LG4G50 Aethionema arabicum HOM05D005732 ORTHO05D007062 4.3e-33 145.6 177 44.1
Lsat_1_v5_gn_1_34600 Lactuca sativa HOM05D005732 ORTHO05D007062 4.3e-33 145.6 164 47.6
Carub.0002s2773 Capsella rubella HOM05D005732 ORTHO05D007062 5.6e-33 145.2 165 45.5
CiPaw.02G147000 Carya illinoinensis HOM05D005732 ORTHO05D007062 5.6e-33 145.2 169 46.7
THA.LOC104813551 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 5.6e-33 145.2 147 50.3
A07p26310 Brassica napus HOM05D005732 ORTHO05D007062 7.3e-33 144.8 161 45.3
BraA07t30275Z Brassica rapa HOM05D005732 ORTHO05D007062 7.3e-33 144.8 161 45.3
BolC6t38039H Brassica oleracea HOM05D005732 ORTHO05D007062 9.6e-33 144.4 167 43.1
Thhalv10019180m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 9.6e-33 144.4 161 45.3
QL05p020542 Quercus lobata HOM05D005732 ORTHO05D007062 9.6e-33 144.4 213 40.4
Solyc03g120870.3 Solanum lycopersicum HOM05D005732 ORTHO05D007062 9.6e-33 144.4 194 41.2
C06p28700 Brassica napus HOM05D005732 ORTHO05D007062 1.3e-32 144.1 197 39.6
Sopen03g039690 Solanum pennellii HOM05D005732 ORTHO05D007062 2.1e-32 143.3 194 42.3
Sabra01G0152800 Salix brachista HOM05D005732 ORTHO05D007062 4.0e-31 139.0 182 41.8
Peaxi162Scf00038g00842 Petunia axillaris HOM05D005732 ORTHO05D007062 1.2e-30 137.5 195 39.0
PGSC0003DMG400002535 Solanum tuberosum HOM05D005732 ORTHO05D007062 1.2e-30 137.5 165 44.2
DCAR_026348 Daucus carota HOM05D005732 ORTHO05D007062 2.0e-30 136.7 160 46.2
Duzib160G0019 Durio zibethinus HOM05D005732 ORTHO05D007062 5.8e-30 135.2 131 53.4
TPR.G35018 Trifolium pratense HOM05D005732 ORTHO05D007062 5.8e-30 135.2 168 45.8
Os01g0725400 Oryza sativa ssp. japonica HOM05D005732 ORTHO05D007062 4.9e-29 132.1 167 44.3
Ca_23241_v3 Cicer arietinum L. HOM05D005732 ORTHO05D007062 6.4e-29 131.7 167 44.9
Lj9A511T51 Lonicera japonica HOM05D005732 ORTHO05D007062 4.2e-28 129.0 199 38.7
unitig_46.g18459 Utricularia gibba HOM05D005732 ORTHO05D007062 1.2e-27 127.5 160 43.8
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 4.6e-27 125.6 116 53.4
MBI19_g26309_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 6.7e-26 121.7 164 42.7
Rhsim12G0202300 Rhododendron simsii HOM05D005732 ORTHO05D007062 8.7e-26 121.3 176 44.9
Prupe.3G065500 Prunus persica HOM05D005732 ORTHO05D007062 2.1e-24 116.7 118 51.7
MBI04_g44953_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 1.4e-23 114.0 109 51.4
Lj9C524T15 Lonicera japonica HOM05D005732 ORTHO05D007062 3.0e-18 96.3 165 38.2
CDE02G4152 Ceratophyllum demersum HOM05D005732 ORTHO05D007062 5.7e-17 92.0 166 33.1
vmacro17018 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 2.8e-16 89.7 118 39.0
CARHR074750 Cardamine hirsuta HOM05D005732 ORTHO05D007062 8.2e-16 88.2 70 55.7
ClCG09G000040 Citrullus lanatus HOM05D005732 ORTHO05D007062 1.4e-15 87.4 89 48.3
ATR0705G087 Amborella trichopoda HOM05D005732 ORTHO05D007062 1.6e-11 73.9 63 55.6
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 3.9e-10 69.3 56 60.7
ATR0705G122 Amborella trichopoda HOM05D005732 ORTHO05D007062 6.7e-10 68.6 98 38.8
Dinv30452 Davidia involucrata HOM05D005732 ORTHO05D007062 6.3e-08 62.0 96 38.5
CARHR049040 Cardamine hirsuta HOM05D005732 ORTHO05D007062 2.4e-07 60.1 43 60.5
SMO367G0421 Selaginella moellendorffii HOM05D002464 ORTHO05D002530 6.9e-07 58.5 112 32.1


User provided reference genes

Program Settings