Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p39180 Brassica napus HOM05D006362 ORTHO05D008295 0.0e+00 1113.2 563 100.0
BraA03t13067Z Brassica rapa HOM05D006362 ORTHO05D008295 0.0e+00 1105.9 563 99.3
BolC3t17030H Brassica oleracea HOM05D006362 ORTHO05D008295 0.0e+00 1093.2 563 98.2
C03p47540 Brassica napus HOM05D006362 ORTHO05D008295 0.0e+00 1088.9 563 97.7
Carub.0003s1481 Capsella rubella HOM05D006362 ORTHO05D008295 1.0e-310 1069.3 563 95.7
AL3G27550 Arabidopsis lyrata HOM05D006362 ORTHO05D008295 1.0e-307 1059.3 563 94.7
AT3G15160 Arabidopsis thaliana HOM05D006362 ORTHO05D008295 3.3e-306 1054.3 563 94.1
BcaC01g03890 Brassica carinata HOM05D006362 ORTHO05D008295 1.7e-305 1052.0 585 92.3
Thhalv10020417m.g Eutrema salsugineum HOM05D006362 ORTHO05D008295 3.7e-305 1050.8 563 94.3
Sp3g13370 Schrenkiella parvula HOM05D006362 ORTHO05D008295 1.2e-303 1045.8 563 93.6
CARHR090140 Cardamine hirsuta HOM05D006362 ORTHO05D008295 7.7e-303 1043.1 561 94.5
Aa31LG8G2360 Aethionema arabicum HOM05D006362 ORTHO05D008295 2.0e-290 1001.9 564 89.2
THA.LOC104818092 Tarenaya hassleriana HOM05D006362 ORTHO05D008295 5.9e-271 937.2 567 84.1
Thecc.07G046200 Theobroma cacao HOM05D006362 ORTHO05D008295 1.5e-242 842.8 571 75.3
Manes.15G074800 Manihot esculenta HOM05D006362 ORTHO05D008295 2.9e-241 838.6 569 75.7
Gorai.002G084800 Gossypium raimondii HOM05D006362 ORTHO05D008295 8.4e-241 837.0 570 74.7
GSVIVG01001989001 Vitis vinifera HOM05D006362 ORTHO05D008295 1.4e-240 836.3 569 75.2
Gohir.A01G076501 Gossypium hirsutum HOM05D006362 ORTHO05D008295 7.1e-240 833.9 570 74.4
Potri.011G135800 Populus trichocarpa HOM05D006362 ORTHO05D008295 3.5e-239 831.6 567 75.0
QL08p012554 Quercus lobata HOM05D006362 ORTHO05D008295 8.7e-238 827.0 567 75.0
CsaV3_1G044730 Cucumis sativus L. HOM05D006362 ORTHO05D008295 1.1e-237 826.6 569 73.8
Sed0025840 Sechium edule HOM05D006362 ORTHO05D008295 1.1e-237 826.6 573 72.9
TAR626G1624 Trochodendron aralioides HOM05D006362 ORTHO05D008295 1.5e-237 826.2 567 74.8
Eucgr.F03442 Eucalyptus grandis HOM05D006362 ORTHO05D008295 3.3e-237 825.1 569 74.0
Duzib268G0905 Durio zibethinus HOM05D006362 ORTHO05D008295 7.3e-237 823.9 570 73.9
TWI38G1299 Tripterygium wilfordii HOM05D006362 ORTHO05D008295 9.6e-237 823.5 564 74.8
Atru.chr2.3247 Acer truncatum HOM05D006362 ORTHO05D008295 1.2e-236 823.2 568 75.0
MELO3C018085.2 Cucumis melo HOM05D006362 ORTHO05D008295 2.1e-236 822.4 569 73.3
Gohir.D01G064000 Gossypium hirsutum HOM05D006362 ORTHO05D008295 1.4e-235 819.7 570 73.7
Ciclev10007871m.g Citrus clementina HOM05D006362 ORTHO05D008295 2.4e-235 818.9 569 74.0
MD03G1209000 Malus domestica HOM05D006362 ORTHO05D008295 1.5e-234 816.2 564 74.1
Sc14g0006480 Simmondsia chinensis HOM05D006362 ORTHO05D008295 2.0e-234 815.8 572 72.9
RcHm_v2.0_Chr4g0399351 Rosa chinensis HOM05D006362 ORTHO05D008295 3.4e-234 815.1 577 73.1
Dinv40729 Davidia involucrata HOM05D006362 ORTHO05D008295 4.4e-234 814.7 568 74.3
FvH4_4g07170 Fragaria vesca HOM05D006362 ORTHO05D008295 7.6e-234 813.9 568 74.1
FAN12G0341 Fragaria x ananassa HOM05D006362 ORTHO05D008295 1.3e-233 813.1 568 74.1
Cfa020397 Carpinus fangiana HOM05D006362 ORTHO05D008295 1.9e-232 809.3 554 75.8
Oeu021406.2 Olea europaea HOM05D006362 ORTHO05D008295 1.9e-232 809.3 573 71.7
CANSAT11G0353 Cannabis sativa HOM05D006362 ORTHO05D008295 7.1e-232 807.4 567 72.8
Lj3g0015245 Lotus japonicus HOM05D006362 ORTHO05D008295 7.1e-232 807.4 567 73.4
TPR.G25875 Trifolium pratense HOM05D006362 ORTHO05D008295 3.5e-231 805.1 569 71.5
Prupe.4G206200 Prunus persica HOM05D006362 ORTHO05D008295 1.7e-230 802.7 555 74.8
PSO832G4364 Papaver somniferum HOM05D006362 ORTHO05D008295 3.9e-230 801.6 565 72.6
Ah.06g182950 Amaranthus hybridus HOM05D006362 ORTHO05D008295 5.1e-230 801.2 574 71.1
FAN22G0212 Fragaria x ananassa HOM05D006362 ORTHO05D008295 8.7e-230 800.4 577 72.4
Hma1.2p1_1344F.1_g277040 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 3.3e-229 798.5 559 74.2
Aqoxy1G03661 Aquilegia oxysepala HOM05D006362 ORTHO05D008295 4.3e-229 798.1 562 72.1
arahy.Tifrunner.gnm1.ann1.Z96I2W Arachis hypogaea HOM05D006362 ORTHO05D008295 1.6e-228 796.2 563 71.4
Medtr4g081050 Medicago truncatula HOM05D006362 ORTHO05D008295 1.6e-228 796.2 573 70.9
Lalb_Chr03g0030071 Lupinus albus HOM05D006362 ORTHO05D008295 2.8e-228 795.4 568 71.8
Psat7g162880 Pisum sativum HOM05D006362 ORTHO05D008295 1.8e-227 792.7 573 70.5
Gorai.009G425700 Gossypium raimondii HOM05D006362 ORTHO05D008295 5.3e-227 791.2 571 72.0
Glyma.06G271800 Glycine max HOM05D006362 ORTHO05D008295 1.2e-226 790.0 566 71.9
AUR62020525 Chenopodium quinoa HOM05D006362 ORTHO05D008295 5.8e-226 787.7 549 74.0
PGR031G2573 Punica granatum HOM05D006362 ORTHO05D008295 5.8e-226 787.7 552 73.9
Nn1g07069 Nelumbo nucifera HOM05D006362 ORTHO05D008295 9.9e-226 786.9 551 74.4
Haze_09637 Corylus avellana HOM05D006362 ORTHO05D008295 5.4e-224 781.2 630 66.7
Cc05_g13400 Coffea canephora HOM05D006362 ORTHO05D008295 1.2e-223 780.0 566 71.6
Nitab4.5_0002342g0020 Nicotiana tabacum HOM05D006362 ORTHO05D008295 1.2e-223 780.0 567 71.6
DCAR_022536 Daucus carota HOM05D006362 ORTHO05D008295 3.5e-223 778.5 590 69.0
Solyc10g006410.3 Solanum lycopersicum HOM05D006362 ORTHO05D008295 1.3e-222 776.5 566 70.1
Ca_18860_v3 Cicer arietinum L. HOM05D006362 ORTHO05D008295 2.3e-222 775.8 557 71.6
Phvul.011G136800 Phaseolus vulgaris HOM05D006362 ORTHO05D008295 3.9e-222 775.0 555 72.3
Sopen10g002360 Solanum pennellii HOM05D006362 ORTHO05D008295 8.7e-222 773.9 566 70.0
arahy.Tifrunner.gnm1.ann1.GJJ2CM Arachis hypogaea HOM05D006362 ORTHO05D008295 1.9e-221 772.7 551 71.7
ATR0697G203 Amborella trichopoda HOM05D006362 ORTHO05D008295 1.6e-220 769.6 564 69.7
CAN.G1781.12 Capsicum annuum HOM05D006362 ORTHO05D008295 1.1e-219 766.9 558 70.6
ECA240G1610 Erigeron canadensis HOM05D006362 ORTHO05D008295 3.1e-219 765.4 568 69.7
HanXRQChr13g0407741 Helianthus annuus HOM05D006362 ORTHO05D008295 5.3e-219 764.6 562 70.1
EL10Ac4g07932 Beta vulgaris HOM05D006362 ORTHO05D008295 1.2e-218 763.5 563 70.5
Rhsim06G0213400 Rhododendron simsii HOM05D006362 ORTHO05D008295 7.6e-218 760.8 618 66.8
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 3.2e-216 755.4 572 70.1
HPP92_009387 Vanilla planifolia HOM05D006362 ORTHO05D008295 2.5e-213 745.7 565 68.1
Gohir.A04G020300 Gossypium hirsutum HOM05D006362 ORTHO05D008295 2.8e-212 742.3 571 69.4
AUR62015672 Chenopodium quinoa HOM05D006362 ORTHO05D008295 4.8e-212 741.5 572 68.2
SGA_v2.0_scaffold80G25930 Striga asiatica HOM05D006362 ORTHO05D008295 4.8e-212 741.5 565 68.0
ClCG05G014560 Citrullus lanatus HOM05D006362 ORTHO05D008295 5.3e-211 738.0 587 66.6
CDE05G0917 Ceratophyllum demersum HOM05D006362 ORTHO05D008295 6.9e-211 737.6 557 69.5
Peaxi162Scf00387g00613 Petunia axillaris HOM05D006362 ORTHO05D008295 6.9e-211 737.6 556 69.6
Lj1C868T5 Lonicera japonica HOM05D006362 ORTHO05D008295 1.1e-205 720.3 540 70.2
Migut.M01793 Erythranthe guttata HOM05D006362 ORTHO05D008295 3.4e-202 708.8 562 66.2
FAN17G1244 Fragaria x ananassa HOM05D006362 ORTHO05D008295 2.2e-201 706.1 575 66.8
Os04g0626900 Oryza sativa ssp. japonica HOM05D006362 ORTHO05D008295 8.5e-201 704.1 565 63.7
Sabra11G0122000 Salix brachista HOM05D006362 ORTHO05D008295 7.2e-200 701.0 610 63.8
Lsat_1_v5_gn_5_81640 Lactuca sativa HOM05D006362 ORTHO05D008295 2.5e-197 692.6 554 67.0
Nitab4.5_0002229g0190 Nicotiana tabacum HOM05D006362 ORTHO05D008295 3.7e-196 688.7 588 64.1
Hund23291 Selenicereus undatus HOM05D006362 ORTHO05D008295 9.1e-195 684.1 516 68.4
CiPaw.11G185900 Carya illinoinensis HOM05D006362 ORTHO05D008295 3.8e-185 652.1 433 77.6
Mapoly0021s0009 Marchantia polymorpha HOM05D006362 ORTHO05D008295 1.4e-171 607.1 572 56.1
BolC3t17019H Brassica oleracea HOM05D006362 ORTHO05D008295 2.7e-170 602.8 321 96.9
Gohir.D05G366200 Gossypium hirsutum HOM05D006362 ORTHO05D008295 5.9e-170 601.7 444 70.9
Pp3c24_12510 Physcomitrium patens HOM05D006362 ORTHO05D008295 1.8e-166 590.1 573 54.6
vmacro11753 Vaccinium macrocarpon HOM05D006362 ORTHO05D008295 2.3e-166 589.7 686 50.3
SMO115G0345 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 2.3e-153 546.6 561 53.8
AagrBONN_evm.TU.Sc2ySwM_117.2426 Anthoceros agrestis HOM05D006362 ORTHO05D008295 7.3e-152 541.6 568 51.6
Pp3c23_6050 Physcomitrium patens HOM05D006362 ORTHO05D008295 1.4e-139 500.7 555 51.5
PGSC0003DMG403014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 8.1e-103 378.6 272 67.3
HPP92_009392 Vanilla planifolia HOM05D006362 ORTHO05D008295 3.3e-96 356.7 277 66.8
Zm00001eb070060 Zea mays HOM05D006362 ORTHO05D008295 2.8e-87 327.0 277 61.0
CSS0013960 Camellia sinensis var. sinensis HOM05D006362 ORTHO05D008295 1.7e-84 317.8 225 73.8
PGSC0003DMG402014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 3.8e-68 263.5 197 68.5
SEGI_18975 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 1.9e-51 208.0 164 65.9
Rhsim12G0205700 Rhododendron simsii HOM05D006362 ORTHO05D008295 1.8e-49 201.4 302 46.7
CBR_g57499 Chara braunii HOM05D006362 ORTHO05D008295 2.6e-48 197.6 242 43.4
Cpa.g.sc131.92 Carica papaya HOM05D006362 ORTHO05D008295 1.2e-40 172.2 116 73.3
Gorai.002G084600 Gossypium raimondii HOM05D006362 ORTHO05D008295 3.4e-40 170.6 120 70.0
Gohir.D01G063866 Gossypium hirsutum HOM05D006362 ORTHO05D008295 9.2e-38 162.5 120 67.5
SHI31860 Sapria himalayana HOM05D006362 ORTHO05D008295 9.2e-38 162.5 149 58.4
SEGI_13710 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 1.4e-33 148.7 129 56.6
VMungo0251G2436 Vigna mungo HOM05D006362 ORTHO05D008295 9.8e-32 142.5 117 65.0
Hma1.2p1_1609F.1_g293480 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 8.6e-28 129.4 178 47.2
SMO347G0562 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 2.0e-24 118.2 174 43.7
HPP92_009393 Vanilla planifolia HOM05D006362 ORTHO05D008295 5.8e-24 116.7 94 61.7
SMO228G0126 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 9.2e-22 109.4 191 39.8
CBR_g57501 Chara braunii HOM05D006362 ORTHO05D008295 3.3e-19 100.9 123 45.5
HanXRQChr16g0507081 Helianthus annuus HOM05D006362 ORTHO05D008295 1.5e-16 92.0 84 58.3
SMO111G0176 Selaginella moellendorffii HOM05D013632 ORTHO05D008295 4.9e-15 87.0 95 47.4
SMO167G0061 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 6.4e-15 86.7 137 43.1
BcaB04g20946 Brassica carinata HOM05D006362 ORTHO05D008295 6.0e-13 80.1 45 82.2
Cc02_g13940 Coffea canephora HOM05D006362 ORTHO05D008295 9.6e-11 72.8 57 73.7
SMO014G0021 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 2.8e-10 71.2 176 32.4
SMO118G0508 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 2.8e-10 71.2 210 29.5
Lsat_1_v5_gn_3_32440 Lactuca sativa HOM05D006362 ORTHO05D228842 1.1e-09 69.3 51 74.5
SMO122G0015 Selaginella moellendorffii HOM05D006362 ORTHO05D374567 1.1e-09 69.3 95 42.1
Cpa.g.sc131.91 Carica papaya HOM05D006362 ORTHO05D116658 8.9e-09 66.2 37 86.5
SMO009G0006 Selaginella moellendorffii HOM05D013632 ORTHO05D379378 2.0e-08 65.1 139 36.0
SMO144G0005 Selaginella moellendorffii HOM05D013632 ORTHO05D378182 1.9e-06 58.5 74 43.2


User provided reference genes

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