Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p38500 Brassica napus HOM05D006647 ORTHO05D008232 2.9e-117 425.2 213 100.0
BraA03t12997Z Brassica rapa HOM05D006647 ORTHO05D008232 6.6e-114 414.1 207 99.5
BcaC01g03971 Brassica carinata HOM05D006647 ORTHO05D008232 1.5e-113 412.9 207 99.0
A03p38460 Brassica napus HOM05D006647 ORTHO05D008232 3.3e-113 411.8 207 99.0
BolC3t16926H Brassica oleracea HOM05D006647 ORTHO05D008232 4.3e-113 411.4 207 98.6
C03p46630 Brassica napus HOM05D006647 ORTHO05D008232 1.2e-110 403.3 209 97.1
Sp1g00030 Schrenkiella parvula HOM05D006647 ORTHO05D008232 1.6e-91 339.7 208 85.6
Sp5g00020 Schrenkiella parvula HOM05D006647 ORTHO05D008232 1.6e-91 339.7 208 85.6
CARHR291410 Cardamine hirsuta HOM05D006647 ORTHO05D008232 4.8e-88 328.2 206 83.5
AL5G46420 Arabidopsis lyrata HOM05D006647 ORTHO05D008232 1.8e-87 326.2 206 85.0
Carub.0005s3017 Capsella rubella HOM05D006647 ORTHO05D008232 1.8e-87 326.2 206 83.5
AT5G26880 Arabidopsis thaliana HOM05D006647 ORTHO05D008232 1.8e-82 309.7 210 80.0
Thhalv10006150m.g Eutrema salsugineum HOM05D006647 ORTHO05D008232 4.3e-81 305.1 176 87.5
THA.LOC104801981 Tarenaya hassleriana HOM05D006647 ORTHO05D008232 6.7e-74 281.2 206 72.3
RcHm_v2.0_Chr1g0314911 Rosa chinensis HOM05D006647 ORTHO05D008232 2.6e-70 269.2 205 67.8
FAN03G0714 Fragaria x ananassa HOM05D006647 ORTHO05D008232 5.5e-68 261.5 189 68.8
FvH4_7g00690 Fragaria vesca HOM05D006647 ORTHO05D008232 2.7e-67 259.2 189 68.3
Atru.chr11.2639 Acer truncatum HOM05D006647 ORTHO05D008232 3.9e-66 255.4 200 65.5
Manes.07G004100 Manihot esculenta HOM05D006647 ORTHO05D008232 2.0e-65 253.1 195 67.7
Prupe.2G009700 Prunus persica HOM05D006647 ORTHO05D008232 7.4e-65 251.1 212 64.2
CiPaw.13G002900 Carya illinoinensis HOM05D006647 ORTHO05D008232 1.7e-64 250.0 190 68.4
VMungo1080G0119 Vigna mungo HOM05D006647 ORTHO05D008232 1.7e-64 250.0 193 67.4
Haze_03236 Corylus avellana HOM05D006647 ORTHO05D008232 2.2e-64 249.6 203 64.5
Nn2g15502 Nelumbo nucifera HOM05D006647 ORTHO05D008232 2.8e-64 249.2 203 65.0
Cfa010738 Carpinus fangiana HOM05D006647 ORTHO05D008232 3.7e-64 248.8 203 64.0
MD07G1006600 Malus domestica HOM05D006647 ORTHO05D008232 3.7e-64 248.8 181 69.6
Phvul.005G036700 Phaseolus vulgaris HOM05D006647 ORTHO05D008232 3.7e-64 248.8 190 66.8
Glyma.08G152700 Glycine max HOM05D006647 ORTHO05D008232 6.3e-64 248.1 141 81.6
Potri.009G064500 Populus trichocarpa HOM05D006647 ORTHO05D008232 2.4e-63 246.1 192 66.7
Sabra09G0047700 Salix brachista HOM05D006647 ORTHO05D008232 2.4e-63 246.1 194 65.5
TWI73G0313 Tripterygium wilfordii HOM05D006647 ORTHO05D008232 4.1e-63 245.4 167 71.9
Lalb_Chr25g0283211 Lupinus albus HOM05D006647 ORTHO05D008232 6.9e-63 244.6 201 62.7
Dinv09377 Davidia involucrata HOM05D006647 ORTHO05D008232 1.2e-62 243.8 204 62.3
Medtr3g027870 Medicago truncatula HOM05D006647 ORTHO05D008232 1.2e-62 243.8 209 60.3
arahy.Tifrunner.gnm1.ann1.BH4E67 Arachis hypogaea HOM05D006647 ORTHO05D008232 2.0e-62 243.0 142 79.6
arahy.Tifrunner.gnm1.ann1.K7GJAS Arachis hypogaea HOM05D006647 ORTHO05D008232 2.0e-62 243.0 142 79.6
Ciclev10032303m.g Citrus clementina HOM05D006647 ORTHO05D008232 2.0e-62 243.0 200 62.5
TPR.G12287 Trifolium pratense HOM05D006647 ORTHO05D008232 2.0e-62 243.0 205 60.0
Lj5g0023478 Lotus japonicus HOM05D006647 ORTHO05D008232 3.4e-62 242.3 162 71.0
Lj9A629T102 Lonicera japonica HOM05D006647 ORTHO05D008232 5.9e-62 241.5 139 80.6
FAN06G3601 Fragaria x ananassa HOM05D006647 ORTHO05D008232 1.3e-61 240.4 145 75.9
FAN10G4164 Fragaria x ananassa HOM05D006647 ORTHO05D008232 1.3e-61 240.4 145 75.9
Hma1.2p1_0929F.1_g237940 Hydrangea macrophylla HOM05D006647 ORTHO05D008232 1.3e-61 240.4 139 78.4
GSVIVG01032057001 Vitis vinifera HOM05D006647 ORTHO05D008232 2.9e-61 239.2 150 76.0
DCAR_006301 Daucus carota HOM05D006647 ORTHO05D008232 6.5e-61 238.0 141 78.7
Psat5g204920 Pisum sativum HOM05D006647 ORTHO05D008232 6.5e-61 238.0 166 68.7
CSS0029691 Camellia sinensis var. sinensis HOM05D006647 ORTHO05D008232 1.9e-60 236.5 212 59.0
PSO339G5555 Papaver somniferum HOM05D006647 ORTHO05D008232 1.9e-60 236.5 209 59.8
TAR633G0758 Trochodendron aralioides HOM05D006647 ORTHO05D008232 4.2e-60 235.3 190 64.2
CsaV3_7G031240 Cucumis sativus L. HOM05D006647 ORTHO05D008232 1.2e-59 233.8 190 63.2
Thecc.01G413900 Theobroma cacao HOM05D006647 ORTHO05D008232 3.6e-59 232.3 139 74.8
QL04p005221 Quercus lobata HOM05D006647 ORTHO05D008232 6.1e-59 231.5 173 67.6
PSO384G2587 Papaver somniferum HOM05D006647 ORTHO05D008232 1.4e-58 230.3 209 59.3
Sed0007518 Sechium edule HOM05D006647 ORTHO05D008232 1.4e-58 230.3 147 71.4
MSTRG.5006 Avicennia marina HOM05D006647 ORTHO05D008232 5.1e-58 228.4 189 64.0
Eucgr.G03394 Eucalyptus grandis HOM05D006647 ORTHO05D008232 1.1e-57 227.3 200 60.5
Actinidia20680 Actinidia chinensis HOM05D006647 ORTHO05D008232 1.5e-57 226.9 190 62.6
CANSAT01G0516 Cannabis sativa HOM05D006647 ORTHO05D008232 2.6e-57 226.1 171 66.7
Gohir.A08G145600 Gossypium hirsutum HOM05D006647 ORTHO05D008232 4.4e-57 225.3 188 60.6
Nitab4.5_0011905g0020 Nicotiana tabacum HOM05D006647 ORTHO05D008232 9.7e-57 224.2 192 61.5
Peaxi162Scf00428g00819 Petunia axillaris HOM05D006647 ORTHO05D008232 2.8e-56 222.6 156 68.6
Gohir.D08G166600 Gossypium hirsutum HOM05D006647 ORTHO05D008232 3.7e-56 222.2 178 63.5
Duzib138G0958 Durio zibethinus HOM05D006647 ORTHO05D008232 4.8e-56 221.9 194 58.2
Gorai.004G174000 Gossypium raimondii HOM05D006647 ORTHO05D008232 6.3e-56 221.5 188 59.6
HanXRQChr01g0017301 Helianthus annuus HOM05D006647 ORTHO05D008232 1.1e-55 220.7 163 65.0
Sc11g0009300 Simmondsia chinensis HOM05D006647 ORTHO05D008232 1.1e-55 220.7 150 68.7
Nitab4.5_0001542g0050 Nicotiana tabacum HOM05D006647 ORTHO05D008232 1.8e-55 219.9 159 69.2
AUR62009372 Chenopodium quinoa HOM05D006647 ORTHO05D008232 5.3e-55 218.4 139 72.7
HPP92_015763 Vanilla planifolia HOM05D006647 ORTHO05D008232 1.2e-54 217.2 162 66.0
ECA248G3327 Erigeron canadensis HOM05D006647 ORTHO05D008232 3.5e-54 215.7 124 78.2
COL.COLO4_23898 Corchorus olitorius HOM05D006647 ORTHO05D008232 1.7e-53 213.4 143 70.6
MSTRG.5008 Avicennia marina HOM05D006647 ORTHO05D008232 2.5e-52 209.5 142 70.4
ATR0605G070 Amborella trichopoda HOM05D006647 ORTHO05D008232 3.2e-52 209.1 143 66.4
Migut.N01481 Erythranthe guttata HOM05D006647 ORTHO05D008232 3.2e-52 209.1 151 68.9
CDE06G2349 Ceratophyllum demersum HOM05D006647 ORTHO05D008232 7.2e-52 208.0 129 72.9
Solyc01g086900.4 Solanum lycopersicum HOM05D006647 ORTHO05D008232 1.2e-51 207.2 195 59.5
Sopen01g033910 Solanum pennellii HOM05D006647 ORTHO05D008232 1.2e-51 207.2 195 59.5
EL10Ac2g04310 Beta vulgaris HOM05D006647 ORTHO05D008232 1.8e-50 203.4 209 56.0
MBI01_g36432_MAGBIO Magnolia biondii HOM05D006647 ORTHO05D008232 1.1e-49 200.7 194 56.7
Hund20080 Selenicereus undatus HOM05D006647 ORTHO05D008232 1.1e-49 200.7 182 60.4
ClCG09G004320 Citrullus lanatus HOM05D006647 ORTHO05D008232 1.5e-49 200.3 189 56.6
FAN01G1843 Fragaria x ananassa HOM05D006647 ORTHO05D008232 2.0e-49 199.9 156 65.4
FAN01G0876 Fragaria x ananassa HOM05D006647 ORTHO05D008232 2.6e-49 199.5 160 65.0
unitig_0.g1579 Utricularia gibba HOM05D006647 ORTHO05D008232 3.3e-49 199.1 168 59.5
Cc02_g28430 Coffea canephora HOM05D006647 ORTHO05D008232 1.3e-48 197.2 112 77.7
Migut.O00562 Erythranthe guttata HOM05D006647 ORTHO05D008232 4.8e-48 195.3 112 76.8
Rhsim01G0130800 Rhododendron simsii HOM05D006647 ORTHO05D008232 6.3e-48 194.9 286 41.6
Mapoly0078s0003 Marchantia polymorpha HOM05D006647 ORTHO05D008232 3.1e-47 192.6 131 66.4
SalBow4G2297 Salvia bowleyana HOM05D006647 ORTHO05D008232 3.1e-47 192.6 111 77.5
Oeu010354.1 Olea europaea HOM05D006647 ORTHO05D008232 1.7e-45 186.8 110 81.8
Pp3c8_11960 Physcomitrium patens HOM05D006647 ORTHO05D008232 2.9e-45 186.0 131 62.6
PGR031G3323 Punica granatum HOM05D006647 ORTHO05D008232 1.1e-44 184.1 188 54.8
Lsat_1_v5_gn_1_109441 Lactuca sativa HOM05D006647 ORTHO05D008232 1.9e-44 183.3 144 61.8
AagrBONN_evm.TU.Sc2ySwM_362.154 Anthoceros agrestis HOM05D006647 ORTHO05D008232 4.0e-42 175.6 118 66.1
SGA_v2.0_scaffold4G02252 Striga asiatica HOM05D006647 ORTHO05D008232 8.8e-42 174.5 189 52.4
CBR_g41537 Chara braunii HOM05D006647 ORTHO05D008232 3.7e-40 169.1 119 66.4
Pp3c23_8130 Physcomitrium patens HOM05D006647 ORTHO05D008232 3.7e-40 169.1 122 60.7
SMO351G0607 Selaginella moellendorffii HOM05D006647 ORTHO05D008232 4.8e-40 168.7 119 63.9
MBI04_g14259_MAGBIO Magnolia biondii HOM05D006647 ORTHO05D008232 1.0e-37 161.0 124 63.7
QL04p005246 Quercus lobata HOM05D000030 ORTHO05D008232 8.5e-37 157.9 137 60.6
Zm00001eb034920 Zea mays HOM05D006647 ORTHO05D008232 8.5e-37 157.9 102 72.5
Ca_26823_v3 Cicer arietinum L. HOM05D006647 ORTHO05D008232 4.7e-35 152.1 81 84.0
AUR62023053 Chenopodium quinoa HOM05D006647 ORTHO05D008232 3.0e-34 149.4 144 54.2
Cc00_g30670 Coffea canephora HOM05D006647 ORTHO05D008232 2.0e-33 146.7 82 79.3
vmacro21178 Vaccinium macrocarpon HOM05D006647 ORTHO05D008232 1.4e-31 140.6 177 46.3
MCO06G107 Micromonas commoda HOM05D006647 ORTHO05D008232 1.8e-31 140.2 125 56.8
Aa31LG10G17450 Aethionema arabicum HOM05D006647 ORTHO05D008232 7.0e-31 138.3 154 53.2
Cre10.g417650 Chlamydomonas reinhardtii HOM05D006647 ORTHO05D008232 5.9e-30 135.2 144 47.9
Cpa.g.sc234.13 Carica papaya HOM05D006647 ORTHO05D008232 1.1e-28 131.0 72 83.3
MELO3C023534.2 Cucumis melo HOM05D006647 ORTHO05D008232 2.0e-25 120.2 71 71.8
Os08g0506500 Oryza sativa ssp. japonica HOM05D006647 ORTHO05D008232 2.7e-22 109.8 132 47.7
MBI04_g09488_MAGBIO Magnolia biondii HOM05D006647 ORTHO05D008232 3.9e-21 105.9 112 56.2
BcaB01g01017 Brassica carinata HOM05D006647 ORTHO05D008232 7.5e-17 91.7 43 97.7
BcaB04g18808 Brassica carinata HOM05D006647 ORTHO05D008232 7.5e-17 91.7 43 97.7
Cpa.g.sc234.12 Carica papaya HOM05D006647 ORTHO05D008232 1.3e-16 90.9 48 83.3
Aa31LG10G17440 Aethionema arabicum HOM05D006647 ORTHO05D008232 2.9e-16 89.7 43 93.0
PGSC0003DMG400006881 Solanum tuberosum HOM05D006647 ORTHO05D008232 4.1e-15 85.9 50 74.0
PRCOL_00005260 Prasinoderma coloniale HOM05D006647 ORTHO05D008232 3.0e-13 79.7 146 35.6
FAN01G1906 Fragaria x ananassa HOM05D006647 ORTHO05D008232 7.1e-07 58.5 28 85.7
Ah.10g029810 Amaranthus hybridus HOM05D006647 ORTHO05D008232 6.0e-06 55.5 30 76.7


User provided reference genes

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