Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p37600 Brassica napus HOM05D008873 ORTHO05D005982 1.5e-147 526.2 266 100.0
BraA03t12914Z Brassica rapa HOM05D008873 ORTHO05D005982 8.2e-146 520.4 266 98.5
BcaC01g04052 Brassica carinata HOM05D008873 ORTHO05D005982 5.0e-143 511.1 266 97.4
C03p45590 Brassica napus HOM05D008873 ORTHO05D005982 5.0e-143 511.1 266 97.4
BolC3t16836H Brassica oleracea HOM05D008873 ORTHO05D005982 5.0e-143 511.1 266 97.4
Sp3g10530 Schrenkiella parvula HOM05D008873 ORTHO05D005982 5.2e-116 421.4 279 83.9
Thhalv10021314m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 8.5e-111 404.1 279 79.9
Carub.0003s1168 Capsella rubella HOM05D008873 ORTHO05D005982 5.2e-108 394.8 279 79.9
BcaB04g21084 Brassica carinata HOM05D008873 ORTHO05D005982 6.8e-108 394.4 280 79.3
BcaB04g21086 Brassica carinata HOM05D008873 ORTHO05D005982 6.8e-108 394.4 280 79.3
AL3G23970 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 2.2e-106 389.4 280 79.6
C05p55490 Brassica napus HOM05D008873 ORTHO05D005982 6.3e-106 387.9 280 78.9
A05p37060 Brassica napus HOM05D008873 ORTHO05D005982 1.1e-105 387.1 280 78.9
BcaC05g29270 Brassica carinata HOM05D008873 ORTHO05D005982 3.8e-103 378.6 280 77.1
AT3G12320 Arabidopsis thaliana HOM05D008873 ORTHO05D005982 1.1e-102 377.1 280 78.9
CARHR086860 Cardamine hirsuta HOM05D008873 ORTHO05D005982 2.5e-102 375.9 281 76.5
BolC5t34215H Brassica oleracea HOM05D008873 ORTHO05D005982 9.8e-99 364.0 297 72.1
BraA05t22503Z Brassica rapa HOM05D008873 ORTHO05D005982 1.7e-90 336.7 286 69.2
Aa31LG3G6540 Aethionema arabicum HOM05D008873 ORTHO05D005982 2.7e-88 329.3 291 66.7
BcaB04g18684 Brassica carinata HOM05D008873 ORTHO05D005982 4.9e-66 255.4 151 90.7
Thhalv10014291m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 5.1e-63 245.4 300 55.3
AL6G17140 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 1.1e-62 244.2 292 56.2
Carub.0006s0591 Capsella rubella HOM05D008873 ORTHO05D005982 6.9e-60 235.0 293 54.6
A10p28780 Brassica napus HOM05D008873 ORTHO05D005982 2.2e-58 229.9 304 53.0
BraA10t44925Z Brassica rapa HOM05D008873 ORTHO05D005982 1.4e-57 227.3 304 52.6
BolC9t59656H Brassica oleracea HOM05D008873 ORTHO05D005982 1.9e-57 226.9 305 51.5
C09p69120 Brassica napus HOM05D008873 ORTHO05D005982 2.4e-57 226.5 305 51.5
Sp6g35890 Schrenkiella parvula HOM05D008873 ORTHO05D005982 4.2e-57 225.7 304 51.3
BcaNung04207 Brassica carinata HOM05D008873 ORTHO05D005982 5.1e-55 218.8 311 49.5
BcaC06g32527 Brassica carinata HOM05D008873 ORTHO05D005982 4.3e-54 215.7 304 50.7
BcaB01g05709 Brassica carinata HOM05D008873 ORTHO05D005982 6.4e-50 201.8 283 50.5
THA.LOC104799328 Tarenaya hassleriana HOM05D008873 ORTHO05D005982 8.4e-50 201.4 301 45.8
AT5G06980 Arabidopsis thaliana HOM05D008873 ORTHO05D005982 4.2e-49 199.1 272 51.5
Aa31sc25G30 Aethionema arabicum HOM05D008873 ORTHO05D005982 6.1e-32 142.1 265 39.2
CARHR206160 Cardamine hirsuta HOM05D008873 ORTHO05D005982 3.9e-31 139.4 171 53.8
BcaC09g51982 Brassica carinata HOM05D008873 ORTHO05D005982 2.4e-28 130.2 101 68.3
C01p06990 Brassica napus HOM05D008873 ORTHO05D005982 3.4e-27 126.3 112 60.7
Duzib128G0414 Durio zibethinus HOM05D007266 ORTHO05D005982 5.3e-20 102.4 298 31.9
Atru.chr12.1311 Acer truncatum HOM05D007266 ORTHO05D005982 1.5e-19 100.9 328 30.5
Lalb_Chr19g0132921 Lupinus albus HOM05D007266 ORTHO05D005982 7.7e-19 98.6 292 29.8
Gorai.009G299100 Gossypium raimondii HOM05D007266 ORTHO05D005982 1.3e-18 97.8 289 30.1
Thecc.10G142300 Theobroma cacao HOM05D007266 ORTHO05D005982 1.3e-18 97.8 339 29.5
Glyma.13G191900 Glycine max HOM05D007266 ORTHO05D005982 1.7e-18 97.4 294 29.9
Gohir.A05G283500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 5.0e-18 95.9 286 29.7
MD07G1043900 Malus domestica HOM05D007266 ORTHO05D005982 8.5e-18 95.1 324 29.0
Lj3g0024959 Lotus japonicus HOM05D007266 ORTHO05D005982 3.2e-17 93.2 285 30.5
FvH4_7g03880 Fragaria vesca HOM05D007266 ORTHO05D005982 9.4e-17 91.7 331 29.6
FAN10G1696 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.2e-16 91.3 337 29.4
RcHm_v2.0_Chr1g0327331 Rosa chinensis HOM05D007266 ORTHO05D005982 1.2e-16 91.3 334 29.9
FAN06G1886 Fragaria x ananassa HOM05D007266 ORTHO05D005982 2.7e-16 90.1 336 29.8
Prupe.2G043600 Prunus persica HOM05D007266 ORTHO05D005982 8.0e-16 88.6 336 29.5
Manes.11G007700 Manihot esculenta HOM05D007266 ORTHO05D005982 1.4e-15 87.8 332 30.7
TWI15G1169 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 1.8e-15 87.4 357 30.0
Dinv11235 Davidia involucrata HOM05D007266 ORTHO05D005982 2.3e-15 87.0 287 30.7
COL.COLO4_06637 Corchorus olitorius HOM05D007266 ORTHO05D005982 5.2e-15 85.9 175 34.9
Glyma.15G229400 Glycine max HOM05D007266 ORTHO05D005982 1.5e-14 84.3 304 28.0
Cfa010951 Carpinus fangiana HOM05D007266 ORTHO05D005982 2.0e-14 84.0 327 29.1
FAN01G0656 Fragaria x ananassa HOM05D007266 ORTHO05D005982 2.6e-14 83.6 338 29.6
Phvul.011G200200 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 2.6e-14 83.6 304 27.0
CiPaw.14G009500 Carya illinoinensis HOM05D007266 ORTHO05D005982 3.3e-14 83.2 329 28.3
arahy.Tifrunner.gnm1.ann1.IJY9PN Arachis hypogaea HOM05D007266 ORTHO05D005982 4.4e-14 82.8 293 27.6
Cpa.g.sc169.34 Carica papaya HOM05D007266 ORTHO05D005982 5.7e-14 82.4 111 43.2
BolC3t12886H Brassica oleracea HOM05D008873 ORTHO05D005982 9.7e-14 81.6 95 49.5
Glyma.04G133400 Glycine max HOM05D007266 ORTHO05D005982 1.3e-13 81.3 305 28.2
Haze_02992 Corylus avellana HOM05D007266 ORTHO05D005982 1.7e-13 80.9 343 27.1
BolC1t05243H Brassica oleracea HOM05D008873 ORTHO05D005982 2.2e-13 80.5 57 73.7
FAN03G0408 Fragaria x ananassa HOM05D007266 ORTHO05D005982 2.2e-13 80.5 337 29.4
Lalb_Chr01g0007431 Lupinus albus HOM05D007266 ORTHO05D005982 1.4e-12 77.8 102 44.1
Psat4g144600 Pisum sativum HOM05D007266 ORTHO05D005982 2.4e-12 77.0 298 30.2
CiPaw.06G056200 Carya illinoinensis HOM05D007266 ORTHO05D005982 4.1e-12 76.3 317 29.0
Lj9C658G11 Lonicera japonica HOM05D007266 ORTHO05D005982 4.1e-12 76.3 216 31.5
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 7.0e-12 75.5 218 30.7
Ciclev10001901m.g Citrus clementina HOM05D007266 ORTHO05D005982 7.0e-12 75.5 117 39.3
C03p03440 Brassica napus HOM05D008873 ORTHO05D005982 9.1e-12 75.1 92 47.8
Gohir.D05G284500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 1.2e-11 74.7 139 35.3
Sabra01G0022900 Salix brachista HOM05D007266 ORTHO05D005982 1.2e-11 74.7 347 28.0
Glyma.11G158200 Glycine max HOM05D007266 ORTHO05D005982 2.0e-11 73.9 201 32.3
HanXRQChr05g0146291 Helianthus annuus HOM05D007266 ORTHO05D005982 3.5e-11 73.2 275 30.2
arahy.Tifrunner.gnm1.ann1.78H5KP Arachis hypogaea HOM05D007266 ORTHO05D005982 4.5e-11 72.8 294 25.9
arahy.Tifrunner.gnm1.ann1.E0LNSJ Arachis hypogaea HOM05D007266 ORTHO05D005982 5.9e-11 72.4 308 26.3
Ca_24011_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 5.9e-11 72.4 302 28.1
Ca_24018_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 5.9e-11 72.4 302 28.1
Nitab4.5_0004168g0140 Nicotiana tabacum HOM05D007266 ORTHO05D005982 1.0e-10 71.6 223 30.5
PGSC0003DMG402003286 Solanum tuberosum HOM05D007266 ORTHO05D005982 1.0e-10 71.6 209 30.1
TPR.G8521 Trifolium pratense HOM05D007266 ORTHO05D005982 1.0e-10 71.6 294 28.6
TWI38G2050 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 1.0e-10 71.6 316 28.5
VMungo1127G1999 Vigna mungo HOM05D007266 ORTHO05D005982 1.0e-10 71.6 319 27.0
Manes.04G156300 Manihot esculenta HOM05D007266 ORTHO05D005982 1.3e-10 71.2 214 30.8
GSVIVG01036604001 Vitis vinifera HOM05D007266 ORTHO05D005982 1.3e-10 71.2 187 33.2
HanXRQChr11g0341241 Helianthus annuus HOM05D007266 ORTHO05D005982 1.7e-10 70.9 184 34.2
DCAR_029711 Daucus carota HOM05D007266 ORTHO05D005982 2.9e-10 70.1 274 26.3
Nitab4.5_0002838g0050 Nicotiana tabacum HOM05D007266 ORTHO05D005982 5.0e-10 69.3 219 28.3
Phvul.005G018800 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 5.0e-10 69.3 247 28.3
vmacro21145 Vaccinium macrocarpon HOM05D007266 ORTHO05D005982 5.0e-10 69.3 118 39.0
Actinidia01519 Actinidia chinensis HOM05D007266 ORTHO05D005982 6.5e-10 68.9 330 25.2
Oeu013066.1 Olea europaea HOM05D007266 ORTHO05D005982 6.5e-10 68.9 321 28.0
Hma1.2p1_0837F.1_g226230 Hydrangea macrophylla HOM05D007266 ORTHO05D005982 1.1e-09 68.2 327 28.1
Medtr8g040640 Medicago truncatula HOM05D007266 ORTHO05D005982 1.5e-09 67.8 293 27.3
Sopen01g040350 Solanum pennellii HOM05D007266 ORTHO05D005982 1.9e-09 67.4 209 29.7
VMungo1080G1603 Vigna mungo HOM05D007266 ORTHO05D005982 1.9e-09 67.4 297 25.6
FAN03G2213 Fragaria x ananassa HOM05D007266 ORTHO05D005982 2.5e-09 67.0 103 43.7
arahy.Tifrunner.gnm1.ann1.5HCQ47 Arachis hypogaea HOM05D007266 ORTHO05D005982 9.4e-09 65.1 318 24.2
Lj3g0005568 Lotus japonicus HOM05D007266 ORTHO05D005982 9.4e-09 65.1 244 28.7
Hund13391 Selenicereus undatus HOM05D007266 ORTHO05D005982 1.2e-08 64.7 140 36.4
QL04p021458 Quercus lobata HOM05D007266 ORTHO05D005982 2.7e-08 63.5 111 38.7
QL07p029253 Quercus lobata HOM05D007266 ORTHO05D005982 2.7e-08 63.5 111 38.7
Sabra03G0144500 Salix brachista HOM05D007266 ORTHO05D005982 2.7e-08 63.5 102 39.2
SalBow5G4193 Salvia bowleyana HOM05D007266 ORTHO05D005982 4.7e-08 62.8 267 27.3
Lsat_1_v5_gn_1_118261 Lactuca sativa HOM05D007266 ORTHO05D005982 1.0e-07 61.6 244 29.1
Potri.003G193800 Populus trichocarpa HOM05D007266 ORTHO05D005982 1.0e-07 61.6 175 32.0
Aqoxy1G00397_Aqoxy1G00398 Aquilegia oxysepala HOM05D007266 ORTHO05D005982 1.4e-07 61.2 118 34.7
Actinidia01687 Actinidia chinensis HOM05D000639 ORTHO05D007519 2.3e-07 60.5 114 35.1
Rhsim01G0124500 Rhododendron simsii HOM05D007266 ORTHO05D005982 2.3e-07 60.5 329 25.5
TWI63G1068 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 2.3e-07 60.5 170 31.8
CANSAT56G2989 Cannabis sativa HOM05D007266 ORTHO05D005982 3.0e-07 60.1 98 41.8
Peaxi162Scf00220g00313 Petunia axillaris HOM05D007266 ORTHO05D005982 4.0e-07 59.7 112 35.7
Prupe.8G062200 Prunus persica HOM05D003662 ORTHO05D001824 4.0e-07 59.7 145 31.7
PGR044G2654 Punica granatum HOM05D007266 ORTHO05D005982 4.0e-07 59.7 229 28.8
TAR633G1403 Trochodendron aralioides HOM05D007266 ORTHO05D005982 4.0e-07 59.7 114 36.0
TAR369G0213 Trochodendron aralioides HOM05D007266 ORTHO05D005982 2.0e-06 57.4 228 28.9
Migut.B01189 Erythranthe guttata HOM05D007266 ORTHO05D005982 4.4e-06 56.2 274 27.4
EL10Ac2g02761 Beta vulgaris HOM05D007266 ORTHO05D005982 5.7e-06 55.8 185 29.2
Eucgr.J00068 Eucalyptus grandis HOM05D007266 ORTHO05D005982 5.7e-06 55.8 106 36.8
Solyc01g096630.3 Solanum lycopersicum HOM05D007266 ORTHO05D005982 5.7e-06 55.8 96 38.5


User provided reference genes

Program Settings