Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 1.2e-214 749.6 390 100.0
BolC3t16350H Brassica oleracea HOM05D004899 ORTHO05D006580 1.1e-212 743.0 390 98.7
BcaC01g04376 Brassica carinata HOM05D004899 ORTHO05D006580 1.9e-212 742.3 390 98.7
C03p40810 Brassica napus HOM05D004899 ORTHO05D006580 1.9e-212 742.3 390 98.7
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 5.7e-212 740.7 395 98.2
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 8.2e-203 710.3 394 94.4
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 3.8e-200 701.4 396 93.4
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 5.0e-200 701.0 394 93.1
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 1.1e-199 699.9 394 93.1
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 1.4e-199 699.5 394 93.1
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 1.7e-195 686.0 390 88.5
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 2.8e-195 685.3 379 95.8
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 6.1e-190 667.5 394 88.3
THA.LOC104820770 Tarenaya hassleriana HOM05D004899 ORTHO05D006580 4.2e-183 644.8 395 85.6
BcaC05g30197 Brassica carinata HOM05D004899 ORTHO05D006580 3.1e-178 628.6 399 83.0
BcaC05g29943 Brassica carinata HOM05D004899 ORTHO05D006580 1.7e-163 579.7 390 78.5
Thecc.05G269900 Theobroma cacao HOM05D004899 ORTHO05D006580 1.1e-154 550.4 394 72.3
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 1.8e-154 549.7 392 72.4
Potri.013G047800 Populus trichocarpa HOM05D004899 ORTHO05D006580 2.4e-154 549.3 392 71.7
Potri.019G020000 Populus trichocarpa HOM05D004899 ORTHO05D006580 3.2e-154 548.9 393 72.3
Duzib106G1539 Durio zibethinus HOM05D004899 ORTHO05D006580 4.1e-154 548.5 394 71.3
Gorai.007G274800 Gossypium raimondii HOM05D004899 ORTHO05D006580 9.2e-154 547.4 392 72.4
C05p62800 Brassica napus HOM05D004899 ORTHO05D006580 2.0e-153 546.2 377 78.8
Gohir.D11G256500 Gossypium hirsutum HOM05D004899 ORTHO05D006580 2.0e-153 546.2 392 72.2
Gohir.A11G246300 Gossypium hirsutum HOM05D004899 ORTHO05D006580 1.0e-152 543.9 392 71.4
Hund22166 Selenicereus undatus HOM05D004899 ORTHO05D006580 2.3e-152 542.7 392 71.2
Sc20g0000690 Simmondsia chinensis HOM05D004899 ORTHO05D006580 1.5e-151 540.0 392 71.2
Manes.08G140200 Manihot esculenta HOM05D004899 ORTHO05D006580 3.3e-151 538.9 395 72.2
Eucgr.B02154 Eucalyptus grandis HOM05D004899 ORTHO05D006580 4.3e-151 538.5 392 71.4
HanXRQChr08g0216941 Helianthus annuus HOM05D004899 ORTHO05D006580 1.2e-150 537.0 392 71.2
FvH4_6g01740 Fragaria vesca HOM05D004899 ORTHO05D006580 3.6e-150 535.4 395 72.9
EL10Ac4g08990 Beta vulgaris HOM05D004899 ORTHO05D006580 1.4e-149 533.5 392 69.1
TWI36G0265 Tripterygium wilfordii HOM05D004899 ORTHO05D006580 1.4e-149 533.5 392 70.9
CSS0003371 Camellia sinensis var. sinensis HOM05D004899 ORTHO05D006580 1.8e-149 533.1 394 70.8
FAN14G2287 Fragaria x ananassa HOM05D004899 ORTHO05D006580 4.0e-149 531.9 395 72.4
FAN14G4075 Fragaria x ananassa HOM05D004899 ORTHO05D006580 4.0e-149 531.9 395 72.4
CiPaw.08G118600 Carya illinoinensis HOM05D004899 ORTHO05D006580 6.8e-149 531.2 393 71.0
RcHm_v2.0_Chr3g0449481 Rosa chinensis HOM05D004899 ORTHO05D006580 6.8e-149 531.2 395 71.9
FAN05G0331 Fragaria x ananassa HOM05D004899 ORTHO05D006580 8.9e-149 530.8 395 72.2
FAN05G3121 Fragaria x ananassa HOM05D004899 ORTHO05D006580 8.9e-149 530.8 395 72.2
Dinv06242 Davidia involucrata HOM05D004899 ORTHO05D006580 1.5e-148 530.0 394 70.1
Prupe.6G350900 Prunus persica HOM05D004899 ORTHO05D006580 1.5e-148 530.0 398 71.1
FAN09G4068 Fragaria x ananassa HOM05D004899 ORTHO05D006580 2.6e-148 529.3 395 71.9
MD04G1231200 Malus domestica HOM05D004899 ORTHO05D006580 2.6e-148 529.3 396 70.7
Peaxi162Scf00015g02911 Petunia axillaris HOM05D004899 ORTHO05D006580 3.4e-148 528.9 394 71.1
PGR142G4366 Punica granatum HOM05D004899 ORTHO05D006580 9.8e-148 527.3 393 71.5
PGSC0003DMG400023503 Solanum tuberosum HOM05D004899 ORTHO05D006580 9.8e-148 527.3 394 71.1
CAN.G1465.15 Capsicum annuum HOM05D004899 ORTHO05D006580 1.1e-146 523.9 395 71.1
QL03p029772 Quercus lobata HOM05D004899 ORTHO05D006580 1.1e-146 523.9 409 67.5
Solyc05g054950.2 Solanum lycopersicum HOM05D004899 ORTHO05D006580 1.1e-146 523.9 394 70.6
Rhsim09G0133700 Rhododendron simsii HOM05D004899 ORTHO05D006580 2.4e-146 522.7 394 69.8
CANSAT54G0581 Cannabis sativa HOM05D004899 ORTHO05D006580 4.1e-146 521.9 397 70.3
Lsat_1_v5_gn_8_25181 Lactuca sativa HOM05D004899 ORTHO05D006580 4.1e-146 521.9 392 70.7
Sabra19G0032200 Salix brachista HOM05D004899 ORTHO05D006580 9.2e-146 520.8 393 69.7
Sopen05g033410 Solanum pennellii HOM05D004899 ORTHO05D006580 1.2e-145 520.4 394 70.3
ClCG11G010490 Citrullus lanatus HOM05D004899 ORTHO05D006580 2.0e-145 519.6 392 68.1
Actinidia34758 Actinidia chinensis HOM05D004899 ORTHO05D006580 4.6e-145 518.5 394 69.0
MELO3C008694.2 Cucumis melo HOM05D004899 ORTHO05D006580 6.0e-145 518.1 394 67.8
COL.COLO4_15501 Corchorus olitorius HOM05D004899 ORTHO05D006580 7.8e-145 517.7 376 71.0
CsaV3_2G009880 Cucumis sativus L. HOM05D004899 ORTHO05D006580 7.8e-145 517.7 394 67.8
GSVIVG01023441001 Vitis vinifera HOM05D004899 ORTHO05D006580 7.8e-145 517.7 394 68.3
MSTRG.8229 Avicennia marina HOM05D004899 ORTHO05D006580 1.3e-144 516.9 394 68.5
Migut.F01538 Erythranthe guttata HOM05D004899 ORTHO05D006580 1.7e-144 516.5 395 69.1
Cc02_g08720 Coffea canephora HOM05D004899 ORTHO05D006580 8.1e-142 507.7 402 68.2
Nn1g02931 Nelumbo nucifera HOM05D004899 ORTHO05D006580 1.8e-141 506.5 392 67.3
Sed0011238 Sechium edule HOM05D004899 ORTHO05D006580 4.0e-141 505.4 396 66.4
TAR362G0172 Trochodendron aralioides HOM05D004899 ORTHO05D006580 6.8e-141 504.6 394 66.5
AUR62040914 Chenopodium quinoa HOM05D004899 ORTHO05D006580 9.8e-140 500.7 392 64.8
SalBow6G5574 Salvia bowleyana HOM05D004899 ORTHO05D006580 1.7e-139 500.0 417 64.7
SGA_v2.0_scaffold426G51496 Striga asiatica HOM05D004899 ORTHO05D006580 2.9e-139 499.2 395 67.6
MBI07_g12932_MAGBIO Magnolia biondii HOM05D004899 ORTHO05D006580 1.9e-138 496.5 395 66.1
Atru.chr2.1001 Acer truncatum HOM05D004899 ORTHO05D006580 1.2e-137 493.8 371 70.9
Glyma.03G250100 Glycine max HOM05D004899 ORTHO05D006580 7.8e-137 491.1 391 66.8
arahy.Tifrunner.gnm1.ann1.A8VMLZ Arachis hypogaea HOM05D004899 ORTHO05D006580 1.0e-136 490.7 397 66.8
Aqoxy5G00161 Aquilegia oxysepala HOM05D004899 ORTHO05D006580 1.3e-136 490.3 389 67.6
arahy.Tifrunner.gnm1.ann1.VXFY9N Arachis hypogaea HOM05D004899 ORTHO05D006580 1.3e-136 490.3 397 66.5
Lj2A44T81 Lonicera japonica HOM05D004899 ORTHO05D006580 1.7e-136 490.0 438 61.6
Glyma.19G247700 Glycine max HOM05D004899 ORTHO05D006580 2.3e-136 489.6 391 67.0
Ciclev10024089m.g Citrus clementina HOM05D004899 ORTHO05D006580 5.1e-136 488.4 371 70.6
VMungo0540G0495 Vigna mungo HOM05D004899 ORTHO05D006580 1.1e-135 487.3 391 66.2
PSO674G0057 Papaver somniferum HOM05D004899 ORTHO05D006580 1.1e-133 480.7 395 65.1
Zm00001eb046420 Zea mays HOM05D004899 ORTHO05D006580 1.1e-133 480.7 393 65.4
AUR62004828 Chenopodium quinoa HOM05D004899 ORTHO05D006580 4.0e-133 478.8 356 68.5
Os10g0467200 Oryza sativa ssp. japonica HOM05D004899 ORTHO05D006580 4.0e-133 478.8 393 64.4
Phvul.006G104800 Phaseolus vulgaris HOM05D004899 ORTHO05D006580 2.9e-131 472.6 391 64.7
Ca_11390_v3 Cicer arietinum L. HOM05D004899 ORTHO05D006580 8.4e-131 471.1 390 64.4
Lj1g0026343 Lotus japonicus HOM05D004899 ORTHO05D006580 1.4e-130 470.3 407 62.2
Lalb_Chr04g0253351 Lupinus albus HOM05D004899 ORTHO05D006580 2.4e-130 469.5 394 63.7
ATR0736G049 Amborella trichopoda HOM05D004899 ORTHO05D006580 1.0e-128 464.2 392 63.3
DCAR_023087 Daucus carota HOM05D004899 ORTHO05D006580 1.5e-127 460.3 391 63.4
TPR.G10414 Trifolium pratense HOM05D004899 ORTHO05D006580 5.6e-127 458.4 392 62.2
Nitab4.5_0003965g0030 Nicotiana tabacum HOM05D004899 ORTHO05D006580 4.7e-126 455.3 394 63.7
CDE05G2618 Ceratophyllum demersum HOM05D004899 ORTHO05D006580 1.1e-122 444.1 398 61.6
unitig_899.g15065 Utricularia gibba HOM05D004899 ORTHO05D006580 1.2e-121 440.7 401 60.8
vmacro10377 Vaccinium macrocarpon HOM05D004899 ORTHO05D006580 8.7e-120 434.5 426 57.3
CARHR078590 Cardamine hirsuta HOM05D004899 ORTHO05D006580 1.2e-116 424.1 242 90.9
Nitab4.5_0000914g0090 Nicotiana tabacum HOM05D004899 ORTHO05D006580 3.9e-112 409.1 394 60.4
Medtr1g116380 Medicago truncatula HOM05D004899 ORTHO05D006580 1.5e-111 407.1 368 59.5
SMO367G0182 Selaginella moellendorffii HOM05D004899 ORTHO05D006580 6.2e-110 401.7 391 55.5
Ah.06g191810 Amaranthus hybridus HOM05D004899 ORTHO05D006580 6.4e-107 391.7 392 53.8
Pp3c17_6400 Physcomitrium patens HOM05D004899 ORTHO05D006580 8.4e-107 391.3 399 54.6
AagrBONN_evm.TU.Sc2ySwM_228.2413 Anthoceros agrestis HOM05D004899 ORTHO05D006580 2.5e-103 379.8 400 52.8
Cpa.g.sc306.4 Carica papaya HOM05D004899 ORTHO05D006580 3.3e-95 352.8 392 52.3
Psat0s1997g0040 Pisum sativum HOM05D004899 ORTHO05D006580 5.7e-95 352.1 343 58.0
Mapoly0097s0077 Marchantia polymorpha HOM05D004899 ORTHO05D006580 3.2e-90 336.3 313 57.5
HPP92_008536 Vanilla planifolia HOM05D004899 ORTHO05D006580 5.5e-90 335.5 285 63.9
Haze_04413 Corylus avellana HOM05D004899 ORTHO05D006580 1.9e-74 283.9 329 52.3
MD12G1249500 Malus domestica HOM05D004899 ORTHO05D006580 6.7e-72 275.4 299 54.8
CARHR078600 Cardamine hirsuta HOM05D004899 ORTHO05D006580 1.5e-71 274.2 153 93.5
RhsimUnG0045000 Rhododendron simsii HOM05D004899 ORTHO05D006580 9.1e-69 265.0 374 44.9
SHI31416 Sapria himalayana HOM05D004899 ORTHO05D006580 5.9e-68 262.3 379 46.4
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 1.6e-65 254.2 161 82.6
CBR_g51833 Chara braunii HOM05D004899 ORTHO05D006580 1.4e-61 241.1 542 33.4
TPR.G8890 Trifolium pratense HOM05D001167 ORTHO05D001054 3.2e-58 229.9 170 66.5
Oeu050631.1 Olea europaea HOM05D004899 ORTHO05D006580 5.2e-56 222.6 295 47.1
Cre06.g263602 Chlamydomonas reinhardtii HOM05D004899 ORTHO05D006580 4.4e-55 219.5 419 33.4
CANSAT80G2333 Cannabis sativa HOM05D004899 ORTHO05D006580 1.1e-53 214.9 186 60.8
BolC5t34933H Brassica oleracea HOM05D004899 ORTHO05D006580 4.1e-53 213.0 121 92.6
CANSAT80G2786 Cannabis sativa HOM05D004899 ORTHO05D006580 9.1e-53 211.8 186 60.8
C01p22380 Brassica napus HOM05D004899 ORTHO05D006580 2.2e-51 207.2 134 81.3
PRCOL_00005674 Prasinoderma coloniale HOM05D004899 ORTHO05D006580 1.9e-50 204.1 390 36.2
BcaC06g35909 Brassica carinata HOM05D004899 ORTHO05D006580 2.5e-50 203.8 146 76.0
MCO09G554 Micromonas commoda HOM05D004899 ORTHO05D006580 4.7e-49 199.5 410 35.9
Hma1.2p1_1336F.1_g276500 Hydrangea macrophylla HOM05D004899 ORTHO05D006580 2.9e-43 180.3 122 74.6
BolC6t38557H Brassica oleracea HOM05D004899 ORTHO05D006580 6.6e-43 179.1 142 70.4
BraA04t16133Z Brassica rapa HOM05D004899 ORTHO05D006580 2.8e-41 173.7 112 83.0
BraA05t23048Z Brassica rapa HOM05D004899 ORTHO05D006580 1.8e-40 171.0 92 93.5
MD00G1148800 Malus domestica HOM05D004899 ORTHO05D006580 3.4e-39 166.8 207 49.3
Cc06_g01540 Coffea canephora HOM05D004899 ORTHO05D006580 1.3e-38 164.9 125 72.8
Cc05_g01300 Coffea canephora HOM05D004899 ORTHO05D006580 1.7e-38 164.5 125 68.0
BcaC09g50711 Brassica carinata HOM05D004899 ORTHO05D006580 8.3e-30 135.6 117 63.2
Cc06_g14670 Coffea canephora HOM05D004899 ORTHO05D006580 1.9e-29 134.4 146 59.6
Oeu040904.1 Olea europaea HOM05D004899 ORTHO05D006580 1.5e-26 124.8 69 78.3
SEGI_05516 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 3.6e-25 120.2 91 67.0
MD08G1214200 Malus domestica HOM05D004899 ORTHO05D006580 2.0e-23 114.4 81 69.1
SEGI_08581 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 5.8e-23 112.8 148 42.6
BolC7t41419H Brassica oleracea HOM05D004899 ORTHO05D006580 3.2e-21 107.1 63 81.0
SEGI_06182 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 8.6e-19 99.0 76 68.4
Psat3g057720 Pisum sativum HOM05D004899 ORTHO05D006580 2.1e-17 94.4 50 80.0
FAN18G0756 Fragaria x ananassa HOM05D004899 ORTHO05D019122 1.5e-15 88.2 81 61.7
SalBow6G6423 Salvia bowleyana HOM05D031023 ORTHO05D019122 4.4e-15 86.7 65 64.6
FvH4_3g30700 Fragaria vesca HOM05D004899 ORTHO05D019122 3.8e-14 83.6 57 70.2
FvH4_4g13630 Fragaria vesca HOM05D004899 ORTHO05D019122 3.0e-11 73.9 44 79.5
Cc04_g06470 Coffea canephora HOM05D004899 ORTHO05D034818 1.4e-08 65.1 38 84.2
A04p04990 Brassica napus HOM05D004899 ORTHO05D006580 6.9e-08 62.8 43 69.8
BolC1t02169H Brassica oleracea HOM05D004899 ORTHO05D006580 2.6e-07 60.8 36 86.1
Psat3g113200 Pisum sativum HOM05D004899 ORTHO05D034818 2.6e-07 60.8 47 59.6
Haze_02280 Corylus avellana HOM05D000013 ORTHO05D000689 9.9e-07 58.9 35 77.1
SalBow5G1052 Salvia bowleyana HOM05D031023 ORTHO05D019122 2.2e-06 57.8 68 45.6
SalBow6G4382 Salvia bowleyana HOM05D031023 ORTHO05D019122 2.2e-06 57.8 68 45.6
SalBow8G1246 Salvia bowleyana HOM05D031023 ORTHO05D019122 2.2e-06 57.8 68 45.6
BcaB06g28621 Brassica carinata HOM05D002665 ORTHO05D002991 3.8e-06 57.0 30 83.3
BcaB06g28622 Brassica carinata HOM05D000888 ORTHO05D000740 8.4e-06 55.8 28 89.3


User provided reference genes

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