Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p29400 Brassica napus HOM05D001502 ORTHO05D002950 7.8e-83 310.5 161 100.0
BolC3t15864H Brassica oleracea HOM05D001502 ORTHO05D002950 5.6e-81 304.3 161 98.8
C03p35530 Brassica napus HOM05D001502 ORTHO05D002950 1.6e-80 302.8 161 98.1
BcaC01g04626 Brassica carinata HOM05D001502 ORTHO05D002950 8.1e-80 300.4 161 97.5
BcaB01g02692 Brassica carinata HOM05D001502 ORTHO05D002950 4.6e-75 284.6 159 93.1
BraA02t07622Z Brassica rapa HOM05D001502 ORTHO05D002950 3.4e-70 268.5 162 86.4
Thhalv10028529m.g Eutrema salsugineum HOM05D001502 ORTHO05D002950 5.8e-70 267.7 162 86.4
BcaB05g23821 Brassica carinata HOM05D001502 ORTHO05D002950 1.3e-69 266.5 162 85.8
Sp6g05920 Schrenkiella parvula HOM05D001502 ORTHO05D002950 1.7e-69 266.2 161 87.0
BcaC03g14142 Brassica carinata HOM05D001502 ORTHO05D002950 9.6e-65 250.4 161 80.1
BolC2t07531H Brassica oleracea HOM05D001502 ORTHO05D002950 3.1e-63 245.4 161 78.9
BcaB01g01656 Brassica carinata HOM05D001502 ORTHO05D002950 4.4e-62 241.5 161 77.6
BcaB01g01539 Brassica carinata HOM05D001502 ORTHO05D002950 5.8e-62 241.1 157 78.3
AT4G11560 Arabidopsis thaliana HOM05D001502 ORTHO05D002950 9.9e-62 240.4 161 78.9
AL6G46080 Arabidopsis lyrata HOM05D001502 ORTHO05D002950 3.8e-61 238.4 161 78.3
BraA09t38408Z Brassica rapa HOM05D001502 ORTHO05D002950 7.1e-60 234.2 156 78.2
BraA09t38407Z Brassica rapa HOM05D001502 ORTHO05D002950 2.1e-59 232.6 156 78.2
Carub.0006s3060 Capsella rubella HOM05D001502 ORTHO05D002950 1.1e-57 226.9 161 75.8
Aa31LG9G10750 Aethionema arabicum HOM05D001502 ORTHO05D002950 1.3e-56 223.4 186 66.1
CARHR254850 Cardamine hirsuta HOM05D001502 ORTHO05D002950 2.4e-55 219.2 165 74.5
Ciclev10019291m.g Citrus clementina HOM05D001502 ORTHO05D002950 5.6e-49 198.0 147 71.4
QL12p033043 Quercus lobata HOM05D001502 ORTHO05D002950 5.6e-49 198.0 151 68.9
Atru.chr9.2191 Acer truncatum HOM05D001502 ORTHO05D002950 1.6e-48 196.4 182 62.6
THA.LOC104814493 Tarenaya hassleriana HOM05D001502 ORTHO05D002950 1.6e-48 196.4 165 65.5
CiPaw.11G135500 Carya illinoinensis HOM05D001502 ORTHO05D002950 2.1e-48 196.1 175 60.0
BcaC03g16347 Brassica carinata HOM05D001502 ORTHO05D002950 2.8e-48 195.7 162 70.4
VMungo0251G3461 Vigna mungo HOM05D001502 ORTHO05D002950 6.2e-48 194.5 180 61.7
Phvul.002G289400 Phaseolus vulgaris HOM05D001502 ORTHO05D002950 1.1e-47 193.7 180 61.1
Sabra01G0078700 Salix brachista HOM05D001502 ORTHO05D002950 1.4e-47 193.4 174 62.1
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 1.8e-47 193.0 135 73.3
MELO3C005675.2 Cucumis melo HOM05D001502 ORTHO05D002950 2.4e-47 192.6 152 69.1
CsaV3_5G002820 Cucumis sativus L. HOM05D001502 ORTHO05D002950 4.0e-47 191.8 152 69.1
BcaB01g01516 Brassica carinata HOM05D001502 ORTHO05D002950 5.3e-47 191.4 159 65.4
CiPaw.12G093300 Carya illinoinensis HOM05D001502 ORTHO05D002950 9.0e-47 190.7 151 67.5
ClCG01G002730 Citrullus lanatus HOM05D001502 ORTHO05D002950 9.0e-47 190.7 153 68.0
THA.LOC104813019 Tarenaya hassleriana HOM05D001502 ORTHO05D002950 1.5e-46 189.9 131 74.8
TWI60G1236 Tripterygium wilfordii HOM05D001502 ORTHO05D002950 1.5e-46 189.9 146 70.5
CSS0008990 Camellia sinensis var. sinensis HOM05D001502 ORTHO05D002950 2.0e-46 189.5 172 61.6
CSS0043015 Camellia sinensis var. sinensis HOM05D001502 ORTHO05D002950 2.0e-46 189.5 172 61.6
Duzib068G0032 Durio zibethinus HOM05D001502 ORTHO05D002950 2.0e-46 189.5 141 70.9
Sed0021720 Sechium edule HOM05D001502 ORTHO05D002950 2.6e-46 189.1 153 67.3
arahy.Tifrunner.gnm1.ann1.T4KI49 Arachis hypogaea HOM05D001502 ORTHO05D002950 4.5e-46 188.3 183 59.0
Ca_24551_v3 Cicer arietinum L. HOM05D001502 ORTHO05D002950 5.8e-46 188.0 151 65.6
arahy.Tifrunner.gnm1.ann1.RBC6WC Arachis hypogaea HOM05D001502 ORTHO05D002950 7.6e-46 187.6 183 59.0
Dinv38944 Davidia involucrata HOM05D001502 ORTHO05D002950 9.9e-46 187.2 168 62.5
Psat2g182400 Pisum sativum HOM05D001502 ORTHO05D002950 9.9e-46 187.2 151 66.9
Potri.003G127400 Populus trichocarpa HOM05D001502 ORTHO05D002950 1.3e-45 186.8 151 68.2
Thecc.03G278600 Theobroma cacao HOM05D001502 ORTHO05D002950 1.7e-45 186.4 135 71.9
BcaC04g21078 Brassica carinata HOM05D001502 ORTHO05D002950 2.2e-45 186.0 160 66.9
Glyma.08G014500 Glycine max HOM05D001502 ORTHO05D002950 2.2e-45 186.0 142 68.3
Eucgr.E00595 Eucalyptus grandis HOM05D001502 ORTHO05D002950 2.9e-45 185.7 179 61.5
Gohir.A08G182600 Gossypium hirsutum HOM05D001502 ORTHO05D002950 4.9e-45 184.9 113 79.6
Gorai.004G212000 Gossypium raimondii HOM05D001502 ORTHO05D002950 4.9e-45 184.9 130 72.3
Duzib205G1526 Durio zibethinus HOM05D001502 ORTHO05D002950 6.4e-45 184.5 151 66.9
LjContig00312_ERROPOS870357g0010973 Lotus japonicus HOM05D001502 ORTHO05D002950 6.4e-45 184.5 167 61.7
TPR.G6654 Trifolium pratense HOM05D001502 ORTHO05D002950 6.4e-45 184.5 151 64.2
TAR629G2340 Trochodendron aralioides HOM05D001502 ORTHO05D002950 6.4e-45 184.5 159 66.7
Manes.02G022300 Manihot esculenta HOM05D001502 ORTHO05D002950 8.4e-45 184.1 181 59.1
TPR.G16303 Trifolium pratense HOM05D001502 ORTHO05D002950 8.4e-45 184.1 151 64.2
Gohir.D11G022000 Gossypium hirsutum HOM05D001502 ORTHO05D002950 1.4e-44 183.3 148 67.6
Gohir.A11G022300 Gossypium hirsutum HOM05D001502 ORTHO05D002950 2.4e-44 182.6 148 66.9
Gorai.007G023400 Gossypium raimondii HOM05D001502 ORTHO05D002950 2.4e-44 182.6 148 66.9
Prupe.5G100000 Prunus persica HOM05D001502 ORTHO05D002950 3.2e-44 182.2 183 56.8
TWI81G0062 Tripterygium wilfordii HOM05D001502 ORTHO05D002950 5.5e-44 181.4 147 66.7
Lalb_Chr16g0389971 Lupinus albus HOM05D001502 ORTHO05D002950 7.1e-44 181.0 152 65.1
PGR042G2965 Punica granatum HOM05D001502 ORTHO05D002950 1.2e-43 180.3 152 64.5
Hund11470 Selenicereus undatus HOM05D001502 ORTHO05D002950 1.2e-43 180.3 143 67.1
Cfa012182 Carpinus fangiana HOM05D001502 ORTHO05D002950 1.6e-43 179.9 151 66.2
Medtr5g010190 Medicago truncatula HOM05D001502 ORTHO05D002950 2.1e-43 179.5 151 62.9
GSVIVG01019755001 Vitis vinifera HOM05D001502 ORTHO05D002950 2.1e-43 179.5 172 59.3
BcaC04g21076 Brassica carinata HOM05D001502 ORTHO05D002950 4.6e-43 178.3 157 65.0
RcHm_v2.0_Chr7g0197721 Rosa chinensis HOM05D001502 ORTHO05D002950 4.6e-43 178.3 150 62.7
Nn6g33451 Nelumbo nucifera HOM05D001502 ORTHO05D002950 7.9e-43 177.6 152 65.1
Sopen08g029370 Solanum pennellii HOM05D001502 ORTHO05D002950 7.9e-43 177.6 151 62.9
MD06G1082900 Malus domestica HOM05D001502 ORTHO05D002950 1.0e-42 177.2 182 57.1
Glyma.05G207800 Glycine max HOM05D001502 ORTHO05D002950 1.3e-42 176.8 134 68.7
Manes.01G061900 Manihot esculenta HOM05D001502 ORTHO05D002950 1.3e-42 176.8 142 66.2
PGSC0003DMG400012341 Solanum tuberosum HOM05D001502 ORTHO05D002950 1.8e-42 176.4 151 62.9
BcaC04g21150 Brassica carinata HOM05D001502 ORTHO05D002950 2.3e-42 176.0 103 83.5
BolC9t56342H Brassica oleracea HOM05D001502 ORTHO05D002950 2.3e-42 176.0 103 83.5
CAN.G774.38 Capsicum annuum HOM05D001502 ORTHO05D002950 2.3e-42 176.0 145 63.4
MD14G1104300 Malus domestica HOM05D001502 ORTHO05D002950 2.3e-42 176.0 182 57.1
vmacro11332 Vaccinium macrocarpon HOM05D001502 ORTHO05D002950 3.0e-42 175.6 169 56.2
Lj2A192G36 Lonicera japonica HOM05D001502 ORTHO05D002950 3.9e-42 175.3 144 68.1
FAN13G3007 Fragaria x ananassa HOM05D001502 ORTHO05D002950 5.1e-42 174.9 150 61.3
FAN18G4468 Fragaria x ananassa HOM05D001502 ORTHO05D002950 5.1e-42 174.9 150 61.3
Hma1.2p1_2966F.1_g330990 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 6.7e-42 174.5 149 61.1
arahy.Tifrunner.gnm1.ann1.W3TBCC Arachis hypogaea HOM05D001502 ORTHO05D002950 8.7e-42 174.1 177 54.2
FAN08G1592 Fragaria x ananassa HOM05D001502 ORTHO05D002950 8.7e-42 174.1 150 61.3
BraA09t38328Z Brassica rapa HOM05D001502 ORTHO05D002950 1.5e-41 173.3 103 82.5
arahy.Tifrunner.gnm1.ann1.HI8SJE Arachis hypogaea HOM05D001502 ORTHO05D002950 2.5e-41 172.6 177 53.7
Actinidia27382 Actinidia chinensis HOM05D001502 ORTHO05D002950 3.3e-41 172.2 182 57.7
CAN.G1842.1 Capsicum annuum HOM05D001502 ORTHO05D002950 5.6e-41 171.4 142 62.7
Lalb_Chr09g0320971 Lupinus albus HOM05D001502 ORTHO05D002950 1.3e-40 170.2 147 61.9
Nitab4.5_0001315g0080 Nicotiana tabacum HOM05D001502 ORTHO05D002950 1.3e-40 170.2 161 58.4
Nitab4.5_0010968g0020 Nicotiana tabacum HOM05D001502 ORTHO05D002950 1.3e-40 170.2 161 58.4
Aqoxy3G00056 Aquilegia oxysepala HOM05D001502 ORTHO05D002950 2.1e-40 169.5 169 58.0
Medtr8g098290 Medicago truncatula HOM05D001502 ORTHO05D002950 2.1e-40 169.5 141 63.8
Oeu019190.1 Olea europaea HOM05D001502 ORTHO05D002950 2.8e-40 169.1 175 55.4
Rhsim02G0231100 Rhododendron simsii HOM05D001502 ORTHO05D002950 4.8e-40 168.3 170 55.3
Sed0014228 Sechium edule HOM05D001502 ORTHO05D002950 4.8e-40 168.3 153 61.4
Ca_17534_v3 Cicer arietinum L. HOM05D001502 ORTHO05D002950 6.2e-40 167.9 179 53.6
FAN04G2422 Fragaria x ananassa HOM05D001502 ORTHO05D002950 1.1e-39 167.2 135 63.7
Hma1.2p1_0896F.1_g234010 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 1.1e-39 167.2 180 54.4
Lj4g0001385 Lotus japonicus HOM05D001502 ORTHO05D002950 1.1e-39 167.2 109 75.2
CANSAT21G0813 Cannabis sativa HOM05D001502 ORTHO05D002950 1.4e-39 166.8 142 60.6
Migut.E01091 Erythranthe guttata HOM05D001502 ORTHO05D002950 1.4e-39 166.8 163 55.2
Actinidia02007 Actinidia chinensis HOM05D001502 ORTHO05D002950 1.8e-39 166.4 151 59.6
Nitab4.5_0001615g0190 Nicotiana tabacum HOM05D001502 ORTHO05D002950 1.8e-39 166.4 156 58.3
SalBow1G7558 Salvia bowleyana HOM05D001502 ORTHO05D002950 2.4e-39 166.0 181 54.1
TPR.G12968 Trifolium pratense HOM05D001502 ORTHO05D002950 2.6e-38 162.5 176 52.3
Ah.12g056920 Amaranthus hybridus HOM05D001502 ORTHO05D002950 1.7e-37 159.8 143 62.2
DCAR_000610 Daucus carota HOM05D001502 ORTHO05D002950 1.7e-37 159.8 150 60.7
PSO170G6703 Papaver somniferum HOM05D001502 ORTHO05D002950 1.7e-37 159.8 139 61.2
CAN.G774.33 Capsicum annuum HOM05D001502 ORTHO05D002950 2.2e-37 159.5 110 70.0
Glyma.01G220200 Glycine max HOM05D001502 ORTHO05D002950 2.9e-37 159.1 116 66.4
Peaxi162Scf00119g00829 Petunia axillaris HOM05D001502 ORTHO05D002950 3.8e-37 158.7 151 58.3
Migut.A00766 Erythranthe guttata HOM05D001502 ORTHO05D002950 4.9e-37 158.3 176 52.8
Lsat_1_v5_gn_6_6481 Lactuca sativa HOM05D001502 ORTHO05D002950 4.9e-37 158.3 139 62.6
MSTRG.13843 Avicennia marina HOM05D001502 ORTHO05D002950 8.4e-37 157.5 174 51.1
Cpa.g.sc74.49 Carica papaya HOM05D001502 ORTHO05D002950 1.1e-36 157.1 110 74.5
CDE08G1696 Ceratophyllum demersum HOM05D001502 ORTHO05D002950 1.1e-36 157.1 152 57.9
HanXRQChr07g0189841 Helianthus annuus HOM05D001502 ORTHO05D002950 1.1e-36 157.1 167 55.1
Lalb_Chr09g0320961 Lupinus albus HOM05D001502 ORTHO05D002950 1.1e-36 157.1 108 70.4
Medtr8g098260 Medicago truncatula HOM05D001502 ORTHO05D002950 1.1e-36 157.1 111 70.3
ECA233G0801 Erigeron canadensis HOM05D001502 ORTHO05D002950 1.4e-36 156.8 157 57.3
MSTRG.25606 Avicennia marina HOM05D001502 ORTHO05D002950 2.5e-36 156.0 179 52.0
EL10Ac5g13060 Beta vulgaris HOM05D001502 ORTHO05D002950 2.5e-36 156.0 143 60.1
SGA_v2.0_scaffold479G52245 Striga asiatica HOM05D001502 ORTHO05D002950 3.2e-36 155.6 149 56.4
unitig_88.g27614 Utricularia gibba HOM05D001502 ORTHO05D002950 3.2e-36 155.6 119 62.2
HPP92_025727 Vanilla planifolia HOM05D001502 ORTHO05D002950 4.2e-36 155.2 146 56.8
Sabra03G0090400 Salix brachista HOM05D001502 ORTHO05D002950 7.1e-36 154.5 199 49.7
AUR62010679 Chenopodium quinoa HOM05D001502 ORTHO05D002950 1.2e-35 153.7 146 59.6
Hma1.2p1_0792F.1_g218570 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 1.2e-35 153.7 174 50.6
Cc10_g03930 Coffea canephora HOM05D001502 ORTHO05D002950 2.1e-35 152.9 149 55.7
AUR62017203 Chenopodium quinoa HOM05D001502 ORTHO05D002950 2.7e-35 152.5 146 58.9
Psat7g033280 Pisum sativum HOM05D001502 ORTHO05D002950 3.5e-35 152.1 182 51.1
ATR0680G298 Amborella trichopoda HOM05D001502 ORTHO05D002950 7.9e-35 151.0 143 54.5
SGA_v2.0_scaffold96G28937 Striga asiatica HOM05D001502 ORTHO05D002950 1.0e-34 150.6 140 55.7
VMungo1215G2558 Vigna mungo HOM05D001502 ORTHO05D002950 3.0e-34 149.1 111 62.2
HanXRQChr07g0187221 Helianthus annuus HOM05D001502 ORTHO05D002950 1.1e-33 147.1 170 52.4
Ciclev10003744m.g Citrus clementina HOM05D001502 ORTHO05D002950 1.5e-33 146.7 188 49.5
Os01g0527400 Oryza sativa ssp. japonica HOM05D001502 ORTHO05D002950 4.3e-33 145.2 140 52.9
Phvul.002G157900 Phaseolus vulgaris HOM05D001502 ORTHO05D002950 1.3e-32 143.7 111 61.3
Mapoly0111s0032 Marchantia polymorpha HOM05D001502 ORTHO05D002950 6.3e-32 141.4 168 49.4
Haze_08835 Corylus avellana HOM05D001502 ORTHO05D002950 1.4e-31 140.2 120 63.3
Actinidia33752 Actinidia chinensis HOM05D001502 ORTHO05D002950 2.0e-30 136.3 173 52.0
TAR375G0676 Trochodendron aralioides HOM05D001502 ORTHO05D002950 3.4e-30 135.6 169 52.7
SMO364G0341 Selaginella moellendorffii HOM05D001502 ORTHO05D002950 6.5e-29 131.3 142 46.5
SEGI_08344 Sequoiadendron giganteum HOM05D001502 ORTHO05D002950 1.9e-28 129.8 140 49.3
FvH4_5g02390 Fragaria vesca HOM05D001502 ORTHO05D002950 1.2e-27 127.1 90 68.9
Pp3c1_20810 Physcomitrium patens HOM05D001502 ORTHO05D002950 1.0e-26 124.0 135 50.4
CAN.G774.37 Capsicum annuum HOM05D001502 ORTHO05D002950 5.1e-26 121.7 161 47.2
AagrBONN_evm.TU.Sc2ySwM_344.901 Anthoceros agrestis HOM05D001502 ORTHO05D002950 6.7e-26 121.3 138 49.3
Pp3c14_3750 Physcomitrium patens HOM05D001502 ORTHO05D002950 6.7e-26 121.3 134 47.0
CBR_g52340 Chara braunii HOM05D001502 ORTHO05D002950 8.8e-26 120.9 112 50.9
CAN.G774.34 Capsicum annuum HOM05D001502 ORTHO05D002950 9.7e-25 117.5 161 47.2
CAN.G774.29 Capsicum annuum HOM05D001502 ORTHO05D002950 3.4e-22 109.0 170 43.5
SEGI_18030 Sequoiadendron giganteum HOM05D001502 ORTHO05D002950 1.0e-21 107.5 111 50.5
CARHR101270 Cardamine hirsuta HOM05D001502 ORTHO05D002950 2.5e-20 102.8 83 67.5
CAN.G774.45 Capsicum annuum HOM05D001502 ORTHO05D002950 5.5e-20 101.7 123 48.0
MD07G1059700 Malus domestica HOM05D001502 ORTHO05D002950 3.6e-19 99.0 125 48.0
PSO675G1241 Papaver somniferum HOM05D001502 ORTHO05D002950 1.5e-17 93.6 102 48.0
PSO675G2714 Papaver somniferum HOM05D001502 ORTHO05D002950 2.0e-17 93.2 102 48.0
PSO732G0359 Papaver somniferum HOM05D001502 ORTHO05D002950 3.3e-17 92.4 102 47.1
Gohir.D08G201100 Gossypium hirsutum HOM05D001502 ORTHO05D002950 7.4e-17 91.3 58 81.0
PSO724G0222 Papaver somniferum HOM05D001502 ORTHO05D002950 2.4e-15 86.3 100 44.0
PSO729G0025 Papaver somniferum HOM05D001502 ORTHO05D002950 2.4e-15 86.3 100 44.0
SGA_v2.0_scaffold173G39192 Striga asiatica HOM05D001502 ORTHO05D002950 2.0e-14 83.2 87 52.9
Nitab4.5_0023620g0010 Nicotiana tabacum HOM05D001502 ORTHO05D002950 1.0e-13 80.9 151 37.1
Sc22g0005600 Simmondsia chinensis HOM05D001502 ORTHO05D002950 1.0e-13 80.9 58 70.7
SMO353G0270 Selaginella moellendorffii HOM05D001502 ORTHO05D002950 1.3e-13 80.5 79 49.4
SEGI_02304 Sequoiadendron giganteum HOM05D001502 ORTHO05D002950 7.2e-12 74.7 60 58.3
CAN.G774.28 Capsicum annuum HOM05D001502 ORTHO05D002950 3.6e-11 72.4 57 66.7
CAN.G4310.1 Capsicum annuum HOM05D001502 ORTHO05D002950 8.0e-11 71.2 52 65.4
unitig_0.g2859 Utricularia gibba HOM05D001502 ORTHO05D002950 1.1e-09 67.4 83 48.2
PSO210G1085 Papaver somniferum HOM05D001502 ORTHO05D304376 4.1e-07 58.9 103 36.9


User provided reference genes

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