Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 2132.8 1124 100.0
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 2079.3 1125 97.5
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 2078.5 1124 97.7
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 2078.5 1129 97.3
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 2060.4 1124 96.3
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 0.0e+00 1892.9 1136 88.3
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 0.0e+00 1860.9 1132 87.4
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 0.0e+00 1858.2 1138 86.5
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 0.0e+00 1852.8 1140 86.9
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 0.0e+00 1841.6 1131 86.6
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 0.0e+00 1822.0 1086 88.3
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 0.0e+00 1817.0 1133 84.7
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1793.9 1086 87.4
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1786.2 1087 87.1
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1770.7 1090 86.6
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1761.5 1088 86.3
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1746.1 1079 86.9
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1647.1 1135 78.3
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1634.4 1137 77.0
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 0.0e+00 1525.0 941 85.7
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 0.0e+00 1425.6 775 99.1
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 0.0e+00 1409.8 1136 67.0
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1398.3 1140 67.0
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1397.1 1144 67.0
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 0.0e+00 1396.3 1151 66.4
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 0.0e+00 1393.3 1144 66.1
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 0.0e+00 1389.4 1133 65.8
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 0.0e+00 1385.9 1147 65.1
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 0.0e+00 1383.2 1131 66.6
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 0.0e+00 1382.1 1147 65.7
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 0.0e+00 1379.8 1142 65.8
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1379.4 1134 65.6
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 0.0e+00 1377.8 1169 65.5
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 0.0e+00 1375.5 1146 65.1
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1374.8 1139 65.9
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 0.0e+00 1373.2 1153 65.6
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 0.0e+00 1370.9 1141 65.3
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 0.0e+00 1370.5 1139 65.8
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1369.0 1139 65.4
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 0.0e+00 1367.1 1144 65.2
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 0.0e+00 1358.2 1158 63.9
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 0.0e+00 1356.7 1147 64.5
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1351.7 1132 64.8
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1349.3 1131 65.2
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1347.0 1137 64.2
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1345.9 1140 64.6
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1345.9 1143 64.6
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 0.0e+00 1345.5 1148 63.9
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1344.3 1144 64.2
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1343.2 1143 64.2
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1342.0 1144 64.3
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1341.3 1137 64.6
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 0.0e+00 1340.9 1145 64.0
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 0.0e+00 1334.3 1128 64.1
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 0.0e+00 1334.3 1139 63.7
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 0.0e+00 1330.9 1129 64.2
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 0.0e+00 1330.9 1142 64.6
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1327.0 1147 63.2
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1325.5 1144 62.8
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1322.4 1137 64.0
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 0.0e+00 1320.1 1126 64.4
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1319.3 1133 63.9
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1316.6 1161 63.2
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 0.0e+00 1313.1 1128 63.0
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 0.0e+00 1294.6 1146 62.0
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 0.0e+00 1281.9 1117 62.6
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 0.0e+00 1274.2 1131 61.7
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 0.0e+00 1262.7 1085 63.8
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 0.0e+00 1253.4 1167 59.9
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 0.0e+00 1249.6 1100 61.6
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 0.0e+00 1243.8 1101 61.4
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 0.0e+00 1240.7 1137 60.3
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1234.6 1156 59.4
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 0.0e+00 1232.6 1124 60.3
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1231.5 1100 60.9
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 0.0e+00 1228.0 1123 61.7
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1227.6 1116 61.4
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1226.1 1135 60.3
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1225.3 1155 59.1
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1225.3 1102 60.4
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 0.0e+00 1207.6 1074 60.9
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1207.6 1140 58.9
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1203.0 1158 57.9
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1163.3 1131 56.9
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 0.0e+00 1157.9 1088 58.7
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 0.0e+00 1140.2 894 74.2
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 0.0e+00 1134.4 1023 63.1
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1127.5 936 64.6
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1126.7 937 64.5
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 0.0e+00 1120.9 1081 57.5
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 0.0e+00 1106.7 1298 51.0
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1100.5 1142 56.0
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 0.0e+00 1091.3 1087 55.6
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 0.0e+00 1083.2 1084 54.8
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 1.4e-308 1063.1 1355 48.9
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 7.9e-299 1030.8 1065 54.6
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 9.0e-295 1017.3 1042 57.4
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 1.0e-293 1013.8 964 60.6
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 1.3e-290 1003.4 1133 52.6
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 6.3e-288 994.6 1104 52.3
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 2.6e-265 919.5 1027 54.1
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 5.7e-265 918.3 933 56.2
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 2.9e-253 879.4 1041 51.1
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 6.5e-253 878.2 881 58.5
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 3.2e-223 779.6 1130 41.9
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 3.4e-217 759.6 1136 40.5
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 1.7e-216 757.3 1094 41.9
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 3.7e-216 756.1 1117 41.5
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 1.1e-212 744.6 1122 41.4
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 1.9e-204 717.2 695 57.0
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 1.6e-203 714.1 896 50.9
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 4.2e-191 672.9 805 51.3
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 1.3e-189 667.9 981 45.2
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 3.3e-188 663.3 1045 38.1
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 1.3e-181 641.3 645 54.6
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.7e-176 624.4 527 62.4
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 2.5e-172 610.5 526 61.8
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 2.3e-165 587.4 428 73.1
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.5e-164 584.7 435 72.2
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 1.9e-159 567.8 655 53.1
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 6.3e-155 552.7 517 56.1
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 4.4e-124 450.3 480 58.3
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 6.1e-118 429.9 410 59.8
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 7.5e-108 396.4 331 63.7
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 7.1e-106 389.8 660 39.7
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 1.9e-103 381.7 227 78.9
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 3.0e-96 357.8 819 33.8
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 3.0e-96 357.8 365 56.7
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 8.7e-88 329.7 189 78.8
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 2.5e-87 328.2 351 49.9
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 3.9e-80 304.3 1098 25.6
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 7.3e-79 300.1 246 68.3
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 8.1e-78 296.6 226 72.6
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 7.6e-76 290.0 262 64.1
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 3.1e-69 268.1 382 45.0
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 1.0e-67 263.1 1270 23.2
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 4.2e-66 257.7 140 85.7
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 1.9e-63 248.8 194 67.5
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 5.7e-63 247.3 198 61.1
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 6.2e-62 243.8 143 80.4
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 2.4e-61 241.9 550 33.8
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 4.1e-61 241.1 140 80.7
AL580U10010 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 6.5e-59 233.8 141 89.4
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 1.1e-50 206.5 122 78.7
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 7.2e-50 203.8 120 79.2
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 7.9e-49 200.3 119 78.2
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 5.1e-48 197.6 539 33.6
FAN11G0203 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.0e-40 173.3 171 60.8
FAN21G0688 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.0e-40 173.3 171 60.8
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 6.7e-40 170.6 121 66.9
Haze_23512 Corylus avellana HOM05D004020 ORTHO05D004735 8.8e-40 170.2 140 70.7
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 1.5e-39 169.5 150 62.7
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 2.6e-39 168.7 134 69.4
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 9.7e-39 166.8 1147 21.4
Cpa.g.sc47.18 Carica papaya HOM05D004020 ORTHO05D004735 8.5e-35 153.7 87 81.6
TAR476G0003 Trochodendron aralioides HOM05D004020 ORTHO05D004735 9.4e-34 150.2 140 65.0
CANSAT64G1073 Cannabis sativa HOM05D004020 ORTHO05D004735 1.6e-33 149.4 82 81.7
ClCG01G012880 Citrullus lanatus HOM05D004020 ORTHO05D004735 2.7e-33 148.7 82 82.9
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 3.3e-31 141.7 129 58.9
MD01G1172900 Malus domestica HOM05D004020 ORTHO05D004735 1.3e-30 139.8 137 62.0
unitig_746.g26603 Utricularia gibba HOM05D004020 ORTHO05D004735 3.7e-30 138.3 176 45.5
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 2.6e-28 132.1 117 57.3
SEGI_13700 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 5.0e-27 127.9 115 60.0
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 3.6e-25 121.7 196 45.9
Nitab4.5_0005230g0050 Nicotiana tabacum HOM05D004020 ORTHO05D004735 3.1e-21 108.6 161 45.3
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 4.1e-21 108.2 118 49.2
FAN16G3550 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.7e-19 102.8 91 65.9
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 1.5e-18 99.8 95 55.8
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 5.5e-18 97.8 86 57.0
HPP92_022568 Vanilla planifolia HOM05D004020 ORTHO05D004735 6.1e-17 94.4 105 49.5
Zm00001eb302500 Zea mays HOM05D004020 ORTHO05D004735 6.1e-17 94.4 101 54.5
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 4.9e-14 84.7 87 44.8
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 1.9e-10 72.8 81 53.1
SHI06173 Sapria himalayana HOM05D004020 ORTHO05D003975 1.5e-07 63.2 59 59.3
Nitab4.5_0011593g0020 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.3e-06 60.1 43 60.5
SHI06177 Sapria himalayana HOM05D004020 ORTHO05D004735 2.9e-06 58.9 45 60.0


User provided reference genes

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