Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p22860 Brassica napus HOM05D005421 ORTHO05D007601 9.8e-129 464.2 374 100.0
C03p27110 Brassica napus HOM05D005421 ORTHO05D007601 6.0e-110 401.7 374 89.6
BolC3t15092H Brassica oleracea HOM05D005421 ORTHO05D007601 6.0e-110 401.7 374 89.6
BcaC01g05387 Brassica carinata HOM05D005421 ORTHO05D007601 2.5e-108 396.4 374 88.8
BraA03t11510Z Brassica rapa HOM05D005421 ORTHO05D007601 3.6e-107 392.5 376 92.8
BcaB01g03524 Brassica carinata HOM05D005421 ORTHO05D007601 2.3e-106 389.8 376 88.3
BcaC02g07328 Brassica carinata HOM05D005421 ORTHO05D007601 1.1e-103 380.9 374 84.2
Sp4g22980 Schrenkiella parvula HOM05D005421 ORTHO05D007601 2.4e-103 379.8 376 87.5
CARHR135760 Cardamine hirsuta HOM05D005421 ORTHO05D007601 7.1e-103 378.3 213 87.8
AL4G38520 Arabidopsis lyrata HOM05D005421 ORTHO05D007601 6.0e-102 375.2 213 86.9
AT2G40650 Arabidopsis thaliana HOM05D005421 ORTHO05D007601 6.0e-102 375.2 213 86.9
Carub.0004s2294 Capsella rubella HOM05D005421 ORTHO05D007601 1.0e-101 374.4 213 86.9
A04p31080 Brassica napus HOM05D005421 ORTHO05D007601 1.3e-101 374.0 374 87.2
C04p68470 Brassica napus HOM05D005421 ORTHO05D007601 1.3e-101 374.0 381 83.7
Aa31LG3G1470 Aethionema arabicum HOM05D005421 ORTHO05D007601 4.7e-99 365.5 213 84.5
THA.LOC104820733 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 6.4e-96 355.1 213 80.3
BcaB06g29166 Brassica carinata HOM05D005421 ORTHO05D007601 8.4e-96 354.8 374 83.4
BolC4t28347H Brassica oleracea HOM05D005421 ORTHO05D007601 1.9e-95 353.6 241 75.9
RcHm_v2.0_Chr3g0456541 Rosa chinensis HOM05D005421 ORTHO05D007601 1.9e-95 353.6 213 78.4
BraA04t18563Z Brassica rapa HOM05D005421 ORTHO05D007601 4.2e-95 352.4 234 76.9
FvH4_6g07010 Fragaria vesca HOM05D005421 ORTHO05D007601 4.2e-95 352.4 213 77.9
FAN05G0688 Fragaria x ananassa HOM05D005421 ORTHO05D007601 4.2e-95 352.4 213 77.9
FAN14G1909 Fragaria x ananassa HOM05D005421 ORTHO05D007601 9.2e-95 351.3 213 77.5
Sabra13G0010600 Salix brachista HOM05D005421 ORTHO05D007601 3.5e-94 349.4 213 77.5
THA.LOC104805907 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 6.0e-94 348.6 213 79.3
TWI12G1149 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 1.0e-93 347.8 213 77.0
CANSAT54G2596 Cannabis sativa HOM05D005421 ORTHO05D007601 1.3e-93 347.4 213 78.4
Cfa006671 Carpinus fangiana HOM05D005421 ORTHO05D007601 1.7e-93 347.1 213 78.4
Potri.013G012000 Populus trichocarpa HOM05D005421 ORTHO05D007601 2.3e-93 346.7 213 76.5
Haze_04100 Corylus avellana HOM05D005421 ORTHO05D007601 3.9e-93 345.9 213 77.9
CiPaw.07G025400 Carya illinoinensis HOM05D005421 ORTHO05D007601 6.6e-93 345.1 213 77.5
Thecc.06G040900 Theobroma cacao HOM05D005421 ORTHO05D007601 6.6e-93 345.1 213 77.0
Ciclev10001489m.g Citrus clementina HOM05D005421 ORTHO05D007601 8.7e-93 344.7 213 77.0
QL03p018920 Quercus lobata HOM05D005421 ORTHO05D007601 8.7e-93 344.7 213 77.5
Lalb_Chr02g0148011 Lupinus albus HOM05D005421 ORTHO05D007601 1.1e-92 344.4 213 76.5
MD12G1209800 Malus domestica HOM05D005421 ORTHO05D007601 4.3e-92 342.4 213 77.0
Manes.13G000084 Manihot esculenta HOM05D005421 ORTHO05D007601 4.3e-92 342.4 213 77.5
Rhsim11G0092200 Rhododendron simsii HOM05D005421 ORTHO05D007601 4.3e-92 342.4 239 70.3
FAN02G3486 Fragaria x ananassa HOM05D005421 ORTHO05D007601 5.6e-92 342.0 227 73.6
PSO170G1114 Papaver somniferum HOM05D005421 ORTHO05D007601 5.6e-92 342.0 213 76.5
PSO407G0035 Papaver somniferum HOM05D005421 ORTHO05D007601 5.6e-92 342.0 213 76.5
MELO3C004206.2 Cucumis melo HOM05D005421 ORTHO05D007601 7.3e-92 341.7 213 76.1
Glyma.10G149900 Glycine max HOM05D005421 ORTHO05D007601 7.3e-92 341.7 213 75.1
Medtr1g083720 Medicago truncatula HOM05D005421 ORTHO05D007601 9.6e-92 341.3 213 76.1
Eucgr.H03270 Eucalyptus grandis HOM05D005421 ORTHO05D007601 1.2e-91 340.9 212 76.9
Glyma.20G238500 Glycine max HOM05D005421 ORTHO05D007601 1.2e-91 340.9 213 75.1
CSS0007056 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 1.6e-91 340.5 213 75.6
CSS0046729 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 1.6e-91 340.5 213 75.6
Lj5g0011296 Lotus japonicus HOM05D005421 ORTHO05D007601 2.1e-91 340.1 212 75.5
MD04G1196900 Malus domestica HOM05D005421 ORTHO05D007601 2.1e-91 340.1 213 76.5
Psat6g151720 Pisum sativum HOM05D005421 ORTHO05D007601 2.1e-91 340.1 213 76.1
Prupe.1G236900 Prunus persica HOM05D005421 ORTHO05D007601 2.1e-91 340.1 213 76.1
Aqoxy2G02863 Aquilegia oxysepala HOM05D005421 ORTHO05D007601 2.8e-91 339.7 213 75.6
Peaxi162Scf00037g01816 Petunia axillaris HOM05D005421 ORTHO05D007601 2.8e-91 339.7 213 74.2
CAN.G1273.26 Capsicum annuum HOM05D005421 ORTHO05D007601 3.6e-91 339.3 213 75.1
PGSC0003DMG400024728 Solanum tuberosum HOM05D005421 ORTHO05D007601 3.6e-91 339.3 213 74.2
CsaV3_2G006840 Cucumis sativus L. HOM05D005421 ORTHO05D007601 4.7e-91 339.0 213 75.1
Sed0018701 Sechium edule HOM05D005421 ORTHO05D007601 4.7e-91 339.0 213 76.5
Cpa.g.sc48.125 Carica papaya HOM05D005421 ORTHO05D007601 6.2e-91 338.6 213 76.5
Phvul.007G199400 Phaseolus vulgaris HOM05D005421 ORTHO05D007601 6.2e-91 338.6 213 75.1
TAR636G1951 Trochodendron aralioides HOM05D005421 ORTHO05D007601 8.1e-91 338.2 212 75.0
ClCG02G015170 Citrullus lanatus HOM05D005421 ORTHO05D007601 1.1e-90 337.8 213 75.1
SGA_v2.0_scaffold4G01947 Striga asiatica HOM05D005421 ORTHO05D007601 1.1e-90 337.8 373 68.4
Actinidia35540 Actinidia chinensis HOM05D005421 ORTHO05D007601 1.8e-90 337.0 213 73.7
Ca_10154_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 1.8e-90 337.0 212 75.5
Ca_29832_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 1.8e-90 337.0 212 75.5
Gohir.A10G155100 Gossypium hirsutum HOM05D005421 ORTHO05D007601 2.4e-90 336.7 213 75.1
Gohir.D10G110800 Gossypium hirsutum HOM05D005421 ORTHO05D007601 2.4e-90 336.7 213 75.1
Gorai.011G122100 Gossypium raimondii HOM05D005421 ORTHO05D007601 2.4e-90 336.7 213 75.1
Atru.chr2.115 Acer truncatum HOM05D005421 ORTHO05D007601 3.1e-90 336.3 213 75.6
HanXRQChr01g0011821 Helianthus annuus HOM05D005421 ORTHO05D007601 3.1e-90 336.3 213 75.1
Lalb_Chr21g0310441 Lupinus albus HOM05D005421 ORTHO05D007601 3.1e-90 336.3 211 74.4
PGR031G1007 Punica granatum HOM05D005421 ORTHO05D007601 3.1e-90 336.3 212 75.9
HPP92_020212 Vanilla planifolia HOM05D005421 ORTHO05D007601 3.1e-90 336.3 213 76.1
HPP92_020232 Vanilla planifolia HOM05D005421 ORTHO05D007601 3.1e-90 336.3 213 76.1
GSVIVG01031188001 Vitis vinifera HOM05D005421 ORTHO05D007601 3.1e-90 336.3 212 75.0
Migut.B01005 Erythranthe guttata HOM05D005421 ORTHO05D007601 4.0e-90 335.9 213 75.1
Ah.04g161240 Amaranthus hybridus HOM05D005421 ORTHO05D007601 5.3e-90 335.5 213 75.1
ECA236G4663 Erigeron canadensis HOM05D005421 ORTHO05D007601 5.3e-90 335.5 213 75.1
VMungo0720G1843 Vigna mungo HOM05D005421 ORTHO05D007601 5.3e-90 335.5 211 75.4
AUR62005243 Chenopodium quinoa HOM05D005421 ORTHO05D007601 6.9e-90 335.1 213 75.1
DCAR_004503 Daucus carota HOM05D005421 ORTHO05D007601 9.0e-90 334.7 213 73.2
Solyc01g100060.4 Solanum lycopersicum HOM05D005421 ORTHO05D007601 9.0e-90 334.7 213 73.2
Sopen01g043590 Solanum pennellii HOM05D005421 ORTHO05D007601 9.0e-90 334.7 213 73.2
Lsat_1_v5_gn_7_73220 Lactuca sativa HOM05D005421 ORTHO05D007601 1.5e-89 334.0 213 74.6
EL10Ac4g09870 Beta vulgaris HOM05D005421 ORTHO05D007601 2.0e-89 333.6 213 75.1
Nitab4.5_0001971g0070 Nicotiana tabacum HOM05D005421 ORTHO05D007601 4.4e-89 332.4 213 73.2
Nitab4.5_0002612g0040 Nicotiana tabacum HOM05D005421 ORTHO05D007601 4.4e-89 332.4 213 73.2
Cc02_g34540 Coffea canephora HOM05D005421 ORTHO05D007601 5.8e-89 332.0 212 74.1
Hund07118 Selenicereus undatus HOM05D005421 ORTHO05D007601 9.9e-89 331.3 213 74.2
Duzib150G0691 Durio zibethinus HOM05D005421 ORTHO05D007601 1.3e-88 330.9 213 74.6
Zm00001eb095730 Zea mays HOM05D005421 ORTHO05D007601 1.3e-88 330.9 213 74.2
Sc16g0008670 Simmondsia chinensis HOM05D005421 ORTHO05D007601 1.7e-88 330.5 213 73.7
TWI56G0052 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 1.7e-88 330.5 231 69.7
SalBow1G5723 Salvia bowleyana HOM05D005421 ORTHO05D007601 2.2e-88 330.1 212 74.5
Dinv30846 Davidia involucrata HOM05D005421 ORTHO05D007601 3.8e-88 329.3 213 73.7
MBI18_g04564_MAGBIO Magnolia biondii HOM05D005421 ORTHO05D007601 3.8e-88 329.3 212 73.1
Os09g0103600 Oryza sativa ssp. japonica HOM05D005421 ORTHO05D007601 2.4e-87 326.6 213 72.8
CDE02G0330 Ceratophyllum demersum HOM05D005421 ORTHO05D007601 1.2e-86 324.3 212 71.2
Mapoly0138s0022 Marchantia polymorpha HOM05D005421 ORTHO05D007601 2.3e-85 320.1 213 72.3
COL.COLO4_26689 Corchorus olitorius HOM05D005421 ORTHO05D007601 5.6e-84 315.5 213 72.8
Oeu045895.1 Olea europaea HOM05D005421 ORTHO05D007601 5.6e-84 315.5 213 74.2
AagrBONN_evm.TU.Sc2ySwM_117.208 Anthoceros agrestis HOM05D005421 ORTHO05D007601 9.6e-84 314.7 213 70.0
arahy.Tifrunner.gnm1.ann1.1MC3I0 Arachis hypogaea HOM05D005421 ORTHO05D007601 3.6e-83 312.8 266 59.8
vmacro01533 Vaccinium macrocarpon HOM05D005421 ORTHO05D007601 8.1e-83 311.6 265 60.4
AUR62000721 Chenopodium quinoa HOM05D005421 ORTHO05D007601 1.1e-82 311.2 185 78.9
Nitab4.5_0003248g0020 Nicotiana tabacum HOM05D005421 ORTHO05D007601 2.4e-82 310.1 213 69.5
COL.COLO4_07356 Corchorus olitorius HOM05D005421 ORTHO05D007601 7.6e-81 305.1 167 82.0
SMO361G0640 Selaginella moellendorffii HOM05D005421 ORTHO05D007601 1.3e-80 304.3 213 69.0
Pp3c1_35390 Physcomitrium patens HOM05D005421 ORTHO05D007601 2.2e-80 303.5 212 68.4
CBR_g27792 Chara braunii HOM05D005421 ORTHO05D007601 3.8e-80 302.8 213 68.5
arahy.Tifrunner.gnm1.ann1.MB2RBZ Arachis hypogaea HOM05D005421 ORTHO05D007601 1.4e-79 300.8 200 71.5
TWI38G1969 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 1.6e-75 287.3 213 64.8
Dinv24409 Davidia involucrata HOM05D005421 ORTHO05D007601 2.8e-75 286.6 207 67.1
FAN09G4258 Fragaria x ananassa HOM05D000389 ORTHO05D000287 1.4e-74 284.3 178 75.3
Nn4g25707 Nelumbo nucifera HOM05D005421 ORTHO05D007601 6.7e-69 265.4 213 64.8
Cre12.g503400 Chlamydomonas reinhardtii HOM05D005421 ORTHO05D007601 1.6e-67 260.8 213 57.3
Peaxi162Scf00404g00814 Petunia axillaris HOM05D005421 ORTHO05D007601 6.0e-62 242.3 209 59.3
MCO01G394 Micromonas commoda HOM05D005421 ORTHO05D007601 2.5e-55 220.3 168 59.5
Haze_27467 Corylus avellana HOM05D005421 ORTHO05D007601 3.1e-50 203.4 171 54.4
PRCOL_00004539 Prasinoderma coloniale HOM05D005421 ORTHO05D007601 2.2e-48 197.2 215 48.4
Potri.005G021600 Populus trichocarpa HOM05D005421 ORTHO05D007601 7.4e-44 182.2 162 58.6
Lj9C202T10 Lonicera japonica HOM05D005421 ORTHO05D007601 4.8e-43 179.5 97 81.4
SEGI_13779 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 3.2e-39 166.8 94 79.8
Lj9A202T65 Lonicera japonica HOM05D005421 ORTHO05D007601 8.2e-35 152.1 116 63.8
Prupe.6G317400 Prunus persica HOM05D005421 ORTHO05D007601 5.3e-34 149.4 118 62.7
SEGI_07889 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 8.5e-24 115.5 142 47.9
ATR0469G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 6.1e-22 109.4 70 71.4
ATR1164G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 6.1e-22 109.4 70 71.4
TAR362G1077 Trochodendron aralioides HOM05D005421 ORTHO05D026565 4.7e-14 83.2 75 57.3
RcHm_v2.0_Chr7g0209371 Rosa chinensis HOM05D005421 ORTHO05D007601 8.0e-14 82.4 53 64.2
BcaB06g27834 Brassica carinata HOM05D005421 ORTHO05D031867 1.4e-13 81.6 69 63.8
Lj3g0025046 Lotus japonicus HOM05D005421 ORTHO05D026565 2.2e-11 74.3 83 49.4
Dinv05263 Davidia involucrata HOM05D002902 ORTHO05D008934 9.2e-10 68.9 42 71.4
BcaB06g29163 Brassica carinata HOM05D005421 ORTHO05D031077 6.6e-08 62.8 30 96.7
ATR0693G223 Amborella trichopoda HOM05D005421 ORTHO05D031077 1.2e-06 58.5 27 96.3
BcaB06g29165 Brassica carinata HOM05D011401 ORTHO05D018605 1.6e-06 58.2 137 33.6
BcaB06g29159 Brassica carinata HOM05D005421 ORTHO05D031077 4.7e-06 56.6 30 86.7


User provided reference genes

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