Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 1.5e-224 782.7 461 100.0
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 1.6e-197 693.0 416 100.0
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 1.2e-171 607.1 418 87.3
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 1.2e-171 607.1 418 87.3
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 2.4e-169 599.4 384 90.1
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 2.3e-156 556.2 383 83.6
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 7.5e-155 551.2 385 83.1
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 7.5e-155 551.2 385 83.1
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 8.1e-133 478.0 400 71.8
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 1.9e-129 466.8 397 73.6
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 2.1e-128 463.4 420 67.4
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 2.8e-117 426.4 413 65.6
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.4e-113 414.1 412 63.3
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 1.6e-112 410.6 398 64.8
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 9.0e-100 368.2 391 61.1
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 3.2e-97 359.8 415 56.4
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 9.3e-97 358.2 500 51.6
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 1.2e-88 331.3 422 53.6
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 7.9e-88 328.6 404 56.4
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 8.7e-87 325.1 404 55.2
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 3.3e-86 323.2 416 55.8
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 4.8e-85 319.3 421 54.2
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 2.5e-81 307.0 395 54.2
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 2.5e-81 307.0 395 54.2
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 1.8e-79 300.8 413 53.8
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 8.2e-77 292.0 411 52.6
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 5.3e-76 289.3 428 51.9
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 2.3e-71 273.9 414 51.4
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 2.6e-70 270.4 295 60.7
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 5.3e-68 262.7 411 48.4
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.0e-66 258.5 415 46.0
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 7.0e-60 235.7 398 45.2
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 4.5e-59 233.0 398 45.0
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 1.7e-58 231.1 399 44.4
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 2.1e-56 224.2 397 44.6
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 4.4e-54 216.5 384 44.8
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 9.8e-54 215.3 401 43.6
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 8.3e-53 212.2 400 43.8
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 4.1e-52 209.9 395 43.8
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 7.0e-52 209.1 416 43.0
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 7.0e-52 209.1 405 41.5
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 9.1e-52 208.8 390 43.6
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 1.2e-51 208.4 413 44.3
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 7.7e-51 205.7 390 43.6
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 2.9e-50 203.8 390 43.3
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 2.9e-50 203.8 404 43.8
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 1.1e-49 201.8 376 43.9
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 1.1e-49 201.8 397 45.3
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 1.9e-49 201.1 389 42.9
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 4.2e-49 199.9 406 44.6
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 1.6e-48 198.0 416 41.1
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 2.8e-48 197.2 405 42.5
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 2.8e-48 197.2 395 42.5
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 1.8e-47 194.5 376 43.6
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 4.0e-47 193.4 408 43.9
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 5.2e-47 193.0 400 41.0
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 8.8e-47 192.2 387 39.5
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 2.6e-46 190.7 389 39.6
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 6.3e-45 186.0 398 38.9
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 1.4e-44 184.9 416 39.7
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 1.4e-44 184.9 386 40.7
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 4.1e-44 183.3 420 39.8
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 4.1e-44 183.3 402 42.0
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 5.4e-44 183.0 383 40.2
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 7.0e-44 182.6 389 38.8
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 2.0e-43 181.0 393 38.7
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 2.7e-43 180.6 377 41.1
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 1.0e-42 178.7 393 41.7
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 1.3e-42 178.3 392 40.1
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 1.7e-42 177.9 327 43.7
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 1.7e-42 177.9 325 43.4
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 3.8e-42 176.8 387 41.1
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 2.5e-41 174.1 395 37.7
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 5.6e-41 172.9 392 40.8
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 7.3e-41 172.6 356 41.0
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 9.5e-41 172.2 423 37.1
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 1.2e-40 171.8 390 38.7
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 1.2e-40 171.8 395 37.7
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 1.6e-40 171.4 326 41.7
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 1.6e-40 171.4 402 38.3
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 2.1e-40 171.0 410 38.3
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 2.8e-40 170.6 394 36.5
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 2.8e-40 170.6 395 37.2
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 1.8e-39 167.9 394 40.6
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 2.3e-39 167.5 421 38.0
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 2.3e-39 167.5 344 39.5
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 3.0e-39 167.2 404 38.9
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 5.2e-39 166.4 407 39.6
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 1.2e-38 165.2 392 38.5
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 4.4e-38 163.3 389 39.6
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 5.7e-38 162.9 390 40.3
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 1.3e-37 161.8 387 40.3
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 1.7e-37 161.4 390 36.7
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 1.7e-37 161.4 389 40.1
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 1.7e-37 161.4 409 36.4
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 1.7e-37 161.4 389 35.2
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 2.2e-37 161.0 391 40.4
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 4.9e-37 159.8 434 35.3
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 1.8e-36 157.9 381 40.9
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 1.8e-36 157.9 394 39.3
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 4.1e-36 156.8 340 42.1
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 4.1e-36 156.8 404 38.4
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 7.0e-36 156.0 367 37.6
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 9.2e-36 155.6 387 39.3
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 2.0e-35 154.5 399 40.1
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 2.0e-35 154.5 374 40.1
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 2.7e-35 154.1 411 37.7
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 3.5e-35 153.7 364 39.0
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 4.6e-35 153.3 394 37.6
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 2.3e-34 151.0 423 34.8
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 2.3e-34 151.0 383 38.9
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 1.1e-33 148.7 373 36.5
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 1.5e-33 148.3 399 38.6
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 2.5e-33 147.5 330 38.8
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 3.3e-33 147.1 373 37.3
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 3.3e-33 147.1 386 33.2
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 1.6e-32 144.8 370 35.4
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 2.8e-32 144.1 438 34.5
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 1.4e-31 141.7 356 39.9
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 8.9e-31 139.0 284 43.3
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 2.0e-30 137.9 298 39.6
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 1.7e-29 134.8 354 36.7
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 3.7e-29 133.7 439 34.6
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 8.3e-29 132.5 204 46.6
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 1.9e-28 131.3 415 30.8
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 3.2e-28 130.6 548 30.3
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 3.0e-26 124.0 271 41.7
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 1.9e-25 121.3 281 39.9
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 1.6e-24 118.2 202 43.1
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 3.6e-24 117.1 365 33.4
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 4.7e-24 116.7 348 32.2
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 1.8e-23 114.8 181 47.0
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 5.2e-23 113.2 241 39.4
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 1.3e-21 108.6 290 40.3
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 1.1e-20 105.5 330 33.9
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 2.7e-19 100.9 373 32.4
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 2.8e-16 90.9 147 45.6
BcaC01g05976 Brassica carinata HOM05D003989 ORTHO05D004626 6.2e-16 89.7 43 100.0
C03p20540 Brassica napus HOM05D003989 ORTHO05D004626 6.2e-16 89.7 43 100.0
BolC3t14434H Brassica oleracea HOM05D003989 ORTHO05D004626 6.2e-16 89.7 43 100.0
BraA03t11012Z Brassica rapa HOM05D003989 ORTHO05D004626 6.2e-16 89.7 43 100.0
Thhalv10017243m.g Eutrema salsugineum HOM05D003989 ORTHO05D004626 1.2e-14 85.5 43 90.7
BcaB01g04061 Brassica carinata HOM05D003989 ORTHO05D004626 1.5e-14 85.1 43 93.0
AL4G26330 Arabidopsis lyrata HOM05D003989 ORTHO05D004626 1.3e-13 82.0 43 86.0
AT2G31140 Arabidopsis thaliana HOM05D003989 ORTHO05D004626 1.3e-13 82.0 43 86.0
Carub.0004s1243 Capsella rubella HOM05D003989 ORTHO05D004626 1.1e-12 79.0 43 83.7
Sp4g13620 Schrenkiella parvula HOM05D003989 ORTHO05D004626 1.1e-12 79.0 43 81.4
BcaB02g06815 Brassica carinata HOM05D003989 ORTHO05D004626 3.2e-12 77.4 43 76.7
BcaB06g28424 Brassica carinata HOM05D003989 ORTHO05D004626 4.1e-12 77.0 43 86.0
BcaC05g24296 Brassica carinata HOM05D003989 ORTHO05D004626 4.1e-12 77.0 43 76.7
C05p04520 Brassica napus HOM05D003989 ORTHO05D004626 4.1e-12 77.0 43 76.7
BraA10t42752Z Brassica rapa HOM05D003989 ORTHO05D004626 4.1e-12 77.0 43 76.7
THA.LOC104815848 Tarenaya hassleriana HOM05D003989 ORTHO05D004626 4.6e-11 73.6 43 76.7
Thhalv10008791m.g Eutrema salsugineum HOM05D003989 ORTHO05D004626 7.8e-11 72.8 63 55.6
Carub.0001s0556 Capsella rubella HOM05D003989 ORTHO05D004626 1.7e-10 71.6 65 53.8
AL1G16180 Arabidopsis lyrata HOM05D003989 ORTHO05D004626 3.9e-10 70.5 63 55.6
AT1G06200 Arabidopsis thaliana HOM05D003989 ORTHO05D004626 5.1e-10 70.1 43 67.4
CARHR005730 Cardamine hirsuta HOM05D003989 ORTHO05D004626 6.6e-10 69.7 43 67.4
BolC5t29223H Brassica oleracea HOM05D003989 ORTHO05D004626 2.5e-09 67.8 56 58.9
CARHR124740 Cardamine hirsuta HOM05D003989 ORTHO05D004626 2.5e-09 67.8 43 67.4
BcaB03g13432 Brassica carinata HOM05D003989 ORTHO05D004626 3.3e-09 67.4 43 69.8
Aa31LG5G5780 Aethionema arabicum HOM05D003989 ORTHO05D004626 4.3e-09 67.0 43 69.8
BraA08t35517Z Brassica rapa HOM05D003989 ORTHO05D004626 9.6e-09 65.9 43 67.4
Sp1g05010 Schrenkiella parvula HOM05D003989 ORTHO05D004626 1.6e-08 65.1 43 69.8
THA.LOC104800868 Tarenaya hassleriana HOM05D003989 ORTHO05D004626 2.1e-08 64.7 46 67.4
Cpa.g.c44470 Carica papaya HOM05D005109 ORTHO05D006084 2.8e-08 64.3 156 41.0
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 8.1e-08 62.8 316 28.8
C08p02410 Brassica napus HOM05D003989 ORTHO05D004626 1.8e-07 61.6 73 49.3
A08p36100 Brassica napus HOM05D003989 ORTHO05D004626 4.0e-07 60.5 51 58.8
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 1.5e-06 58.5 218 33.9
Rhsim13G0035500 Rhododendron simsii HOM05D003989 ORTHO05D004626 2.6e-06 57.8 43 60.5
Hund02930 Selenicereus undatus HOM05D003989 ORTHO05D004626 2.6e-06 57.8 43 60.5
TAR636G0965 Trochodendron aralioides HOM05D003989 ORTHO05D004626 2.6e-06 57.8 43 62.8
Nn1g02783 Nelumbo nucifera HOM05D003989 ORTHO05D004626 3.4e-06 57.4 43 60.5
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 4.4e-06 57.0 316 25.0
Migut.N02208 Erythranthe guttata HOM05D003989 ORTHO05D004626 4.4e-06 57.0 43 60.5
vmacro02667 Vaccinium macrocarpon HOM05D003989 ORTHO05D004626 7.6e-06 56.2 43 62.8


User provided reference genes

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