Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 4.9e-48 194.1 97 100.0
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 5.4e-47 190.7 97 99.0
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 5.4e-47 190.7 97 99.0
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 2.0e-41 172.2 90 96.7
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 2.0e-41 172.2 90 96.7
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 2.0e-41 172.2 90 96.7
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 2.0e-41 172.2 90 96.7
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 9.9e-41 169.9 95 89.5
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 7.1e-39 163.7 95 85.3
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 2.1e-38 162.2 95 85.3
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 2.7e-38 161.8 95 85.3
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 3.5e-38 161.4 95 84.2
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 4.6e-38 161.0 95 85.3
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 4.6e-38 161.0 95 85.3
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 3.9e-37 157.9 95 82.1
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 3.9e-37 157.9 95 82.1
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 7.3e-36 153.7 97 80.4
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 7.3e-36 153.7 97 80.4
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 7.3e-36 153.7 97 80.4
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 2.8e-35 151.8 93 81.7
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 1.4e-34 149.4 88 83.0
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 4.5e-33 144.4 79 91.1
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 4.5e-33 144.4 79 91.1
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 4.5e-33 144.4 79 91.1
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 1.7e-32 142.5 86 80.2
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 5.4e-31 137.5 95 78.9
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 8.7e-29 130.2 95 67.4
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 1.5e-28 129.4 95 67.4
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 1.5e-28 129.4 88 71.6
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 1.9e-28 129.0 95 67.4
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 3.3e-28 128.3 95 65.3
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 4.3e-28 127.9 95 66.3
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 5.6e-28 127.5 80 75.0
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 5.6e-28 127.5 95 67.4
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 7.4e-28 127.1 95 64.2
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 7.4e-28 127.1 87 69.0
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 9.6e-28 126.7 95 65.3
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 9.6e-28 126.7 95 63.2
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 1.3e-27 126.3 95 69.5
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 1.3e-27 126.3 87 70.1
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 1.6e-27 125.9 95 69.5
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 1.6e-27 125.9 94 67.0
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 1.6e-27 125.9 87 69.0
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 2.1e-27 125.6 94 68.1
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 2.1e-27 125.6 94 67.0
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 2.8e-27 125.2 79 74.7
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 2.8e-27 125.2 76 82.9
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 3.7e-27 124.8 82 70.7
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 3.7e-27 124.8 95 69.5
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 3.7e-27 124.8 92 67.4
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 3.7e-27 124.8 94 64.9
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 3.7e-27 124.8 80 73.8
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 4.8e-27 124.4 80 75.0
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 6.2e-27 124.0 81 72.8
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 6.2e-27 124.0 88 68.2
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 8.1e-27 123.6 80 73.8
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 8.1e-27 123.6 81 74.1
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 8.1e-27 123.6 95 65.3
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 8.1e-27 123.6 87 66.7
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 1.1e-26 123.2 82 70.7
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 1.1e-26 123.2 82 70.7
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 1.8e-26 122.5 93 66.7
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 1.8e-26 122.5 81 69.1
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 2.4e-26 122.1 82 68.3
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 2.4e-26 122.1 94 60.6
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 2.4e-26 122.1 80 73.8
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 2.4e-26 122.1 80 73.8
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 2.4e-26 122.1 80 73.8
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 3.1e-26 121.7 81 69.1
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 3.1e-26 121.7 87 67.8
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 3.1e-26 121.7 81 69.1
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 4.0e-26 121.3 80 71.2
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 4.0e-26 121.3 88 68.2
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 5.3e-26 120.9 81 69.1
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 5.3e-26 120.9 94 64.9
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 5.3e-26 120.9 81 71.6
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 5.3e-26 120.9 81 70.4
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 6.9e-26 120.6 95 64.2
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 9.0e-26 120.2 82 65.9
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 9.0e-26 120.2 80 73.8
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 9.0e-26 120.2 81 67.9
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 1.5e-25 119.4 86 64.0
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 1.5e-25 119.4 94 64.9
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 2.0e-25 119.0 83 66.3
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 2.0e-25 119.0 81 70.4
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 2.6e-25 118.6 81 71.6
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 3.4e-25 118.2 80 70.0
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 4.5e-25 117.9 81 69.1
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 5.8e-25 117.5 87 67.8
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 5.8e-25 117.5 95 60.0
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 7.6e-25 117.1 81 67.9
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 9.9e-25 116.7 94 61.7
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 1.3e-24 116.3 84 63.1
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 1.3e-24 116.3 93 64.5
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 1.3e-24 116.3 97 59.8
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 2.9e-24 115.2 80 68.8
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 4.9e-24 114.4 76 72.4
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 4.9e-24 114.4 80 66.2
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 6.4e-24 114.0 100 59.0
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 6.4e-24 114.0 84 69.0
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 8.4e-24 113.6 81 67.9
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 1.1e-23 113.2 92 58.7
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.4e-23 112.8 80 65.0
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 1.9e-23 112.5 79 68.4
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 1.9e-23 112.5 74 74.3
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 1.9e-23 112.5 76 72.4
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 1.9e-23 112.5 99 56.6
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.9e-23 112.5 76 72.4
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.9e-23 112.5 76 72.4
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.9e-23 112.5 76 72.4
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 5.5e-23 110.9 80 71.2
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 5.5e-23 110.9 74 74.3
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 1.6e-22 109.4 71 76.1
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 1.6e-22 109.4 76 68.4
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 1.6e-22 109.4 81 69.1
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 2.1e-22 109.0 82 59.8
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 4.6e-22 107.8 76 68.4
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 6.0e-22 107.5 75 73.3
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 6.0e-22 107.5 74 73.0
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.3e-21 106.3 83 62.7
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 1.3e-21 106.3 76 67.1
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 2.3e-21 105.5 90 61.1
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 2.3e-21 105.5 82 63.4
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 3.0e-21 105.1 76 67.1
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 3.9e-21 104.8 76 65.8
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 5.1e-21 104.4 80 62.5
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 1.9e-20 102.4 80 61.2
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 3.3e-20 101.7 97 49.5
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 4.3e-20 101.3 88 62.5
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 9.0e-18 93.6 75 64.0
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 7.6e-17 90.5 80 60.0
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 7.6e-17 90.5 78 57.7
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 1.0e-16 90.1 73 61.6
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 1.7e-16 89.4 78 59.0
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 8.4e-16 87.0 77 58.4
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 1.1e-15 86.7 79 53.2
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 7.1e-15 84.0 85 52.9
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 2.7e-14 82.0 54 68.5
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 2.5e-12 75.5 71 52.1
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 9.7e-12 73.6 52 63.5
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 1.6e-11 72.8 52 65.4
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 1.6e-11 72.8 52 65.4
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 8.2e-11 70.5 78 46.2
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 4.1e-10 68.2 51 58.8


User provided reference genes

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