Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 0.0e+00 1198.7 731 100.0
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 0.0e+00 1188.7 731 97.7
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 0.0e+00 1182.9 732 98.6
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 0.0e+00 1173.3 731 97.0
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 0.0e+00 1171.4 757 92.5
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 0.0e+00 1164.1 758 85.6
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 0.0e+00 1124.8 731 94.0
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 0.0e+00 1095.5 731 91.9
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 0.0e+00 1092.8 731 91.5
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 0.0e+00 1088.2 731 90.3
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 0.0e+00 1088.2 732 92.1
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 0.0e+00 1075.1 769 85.3
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 5.0e-312 1073.5 731 88.0
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 6.5e-310 1067.0 735 90.5
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 1.4e-304 1049.3 731 89.1
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 6.1e-300 1033.9 734 89.0
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 3.7e-297 1024.6 734 87.7
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 2.9e-286 988.4 734 82.2
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 6.7e-275 950.7 735 80.5
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 7.4e-274 947.2 784 77.9
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 8.6e-238 827.4 751 69.8
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 1.5e-237 826.6 748 69.5
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 6.2e-236 821.2 747 69.9
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 8.9e-235 817.4 753 69.5
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.2e-234 817.0 748 73.1
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.4e-234 815.5 748 73.0
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 7.5e-234 814.3 749 73.0
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.2e-233 812.8 749 72.9
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 4.9e-233 811.6 739 71.2
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 3.2e-232 808.9 749 69.2
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 1.6e-231 806.6 750 70.9
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 1.6e-231 806.6 750 70.9
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 1.6e-228 796.6 761 69.5
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 8.9e-227 790.8 752 69.1
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 3.4e-226 788.9 752 68.0
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 1.7e-225 786.6 750 68.7
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 2.9e-225 785.8 796 54.9
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 1.1e-224 783.9 642 64.0
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 9.2e-224 780.8 632 66.0
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 1.2e-223 780.4 767 66.9
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 2.1e-223 779.6 746 68.1
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 6.6e-222 774.6 745 68.2
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 1.5e-221 773.5 747 68.0
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 3.3e-221 772.3 746 67.6
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 5.6e-221 771.5 761 68.1
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 2.8e-220 769.2 774 65.5
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 3.6e-220 768.8 772 65.9
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 3.6e-220 768.8 752 66.8
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 2.4e-219 766.1 753 67.9
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 3.1e-219 765.8 753 67.6
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 1.5e-218 763.5 745 66.6
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 2.6e-218 762.7 751 70.0
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 3.4e-218 762.3 759 66.3
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 4.4e-218 761.9 753 67.7
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 9.9e-218 760.8 753 67.6
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 9.9e-218 760.8 751 70.0
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 1.7e-217 760.0 759 65.5
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 2.9e-217 759.2 740 66.6
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 2.9e-217 759.2 753 69.6
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 3.8e-217 758.8 761 66.4
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 6.4e-217 758.1 746 68.4
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 1.4e-216 756.9 743 66.9
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 1.9e-216 756.5 825 62.7
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 5.4e-216 755.0 746 68.4
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 7.1e-216 754.6 786 63.9
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 1.6e-215 753.4 761 66.6
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 7.8e-215 751.1 742 66.7
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 7.8e-215 751.1 765 67.5
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 1.0e-214 750.7 751 66.0
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 1.7e-214 750.0 742 66.4
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 3.0e-214 749.2 777 65.3
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 3.9e-214 748.8 742 66.0
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 1.5e-213 746.9 755 66.5
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 5.6e-213 745.0 741 66.8
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 4.8e-212 741.9 754 67.8
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 6.2e-212 741.5 753 69.2
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 2.4e-211 739.6 753 69.2
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 2.4e-211 739.6 768 63.4
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 5.3e-211 738.4 768 63.4
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 5.3e-211 738.4 754 66.7
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 6.9e-211 738.0 759 63.5
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 1.5e-210 736.9 776 63.7
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 3.4e-210 735.7 750 65.9
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 5.8e-210 734.9 766 64.4
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 9.9e-210 734.2 786 54.5
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 1.1e-208 730.7 749 67.2
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 1.1e-205 720.7 643 63.5
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 2.5e-205 719.5 845 59.2
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 1.6e-204 716.8 759 64.4
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 2.8e-204 716.1 743 67.3
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 3.6e-204 715.7 762 65.9
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 5.3e-203 711.8 757 65.1
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 2.2e-201 706.4 840 61.7
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 4.9e-201 705.3 790 54.4
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 1.2e-199 700.7 740 66.9
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 1.6e-199 700.3 790 61.9
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 5.1e-198 695.3 746 63.7
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 3.3e-197 692.6 684 69.0
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 9.6e-197 691.0 747 64.3
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 4.5e-194 682.2 773 60.8
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 8.7e-182 641.3 752 62.6
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 2.8e-180 636.3 787 57.8
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 4.5e-178 629.0 806 58.6
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 7.7e-170 601.7 750 58.0
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 8.5e-169 598.2 603 55.9
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 9.4e-168 594.7 564 62.6
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 7.5e-157 558.5 721 58.7
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 4.8e-156 555.8 542 61.4
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 5.0e-153 545.8 773 55.8
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 1.5e-152 544.3 766 53.9
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.0e-150 538.1 551 68.4
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 1.0e-142 511.5 753 55.6
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 4.0e-142 509.6 755 54.7
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 4.0e-142 509.6 773 54.6
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 7.0e-139 498.8 754 55.3
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 1.1e-136 491.5 454 60.8
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 2.9e-116 423.7 440 54.5
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 2.8e-111 407.1 456 51.8
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 1.4e-110 404.8 606 43.7
AUR62017765 Chenopodium quinoa HOM05D004098 ORTHO05D005215 2.0e-101 374.4 382 56.0
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 1.1e-94 352.1 483 48.0
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 3.2e-91 340.5 311 81.4
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 1.0e-89 335.5 341 76.5
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 5.1e-89 333.2 320 80.6
Ah.04g164850 Amaranthus hybridus HOM05D000499 ORTHO05D002036 1.6e-87 328.2 379 52.8
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 2.6e-85 320.9 304 81.6
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 6.2e-79 299.7 477 43.6
CDE05G2368 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 7.9e-74 282.7 332 50.3
Cpa.g.sc12.52 Carica papaya HOM05D004098 ORTHO05D005215 1.8e-70 271.6 193 65.8
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 1.3e-68 265.4 749 31.6
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 8.7e-65 252.7 848 38.3
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.7e-55 221.9 126 85.7
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 1.4e-54 218.8 707 29.6
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.7e-44 185.3 181 57.5
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.2e-39 168.3 98 84.7
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 8.2e-39 166.4 90 87.8
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 3.2e-35 154.5 99 74.7
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.4e-32 144.4 226 41.6
A02p09220 Brassica napus HOM05D004098 ORTHO05D005215 9.8e-32 142.9 93 82.8
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 1.3e-31 142.5 226 43.4
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.4e-30 139.0 226 40.7
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.4e-30 137.1 76 88.2
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 7.0e-30 136.7 84 81.0
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.5e-28 130.2 83 74.7
Lsat_1_v5_gn_8_35540 Lactuca sativa HOM05D004098 ORTHO05D005215 1.5e-27 129.0 167 49.7
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.1e-26 123.6 66 84.8
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.8e-25 122.1 103 61.2
C02p15380 Brassica napus HOM05D004098 ORTHO05D005215 5.2e-25 120.6 136 58.8
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 4.9e-23 114.0 70 78.6
Hma1.2p1_0321F.1_g124420 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 8.3e-23 113.2 141 51.8
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 9.2e-22 109.8 61 83.6
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-21 109.4 61 83.6
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.5e-21 107.8 60 85.0
MBI15_g32219_MAGBIO Magnolia biondii HOM05D004098 ORTHO05D005215 7.8e-21 106.7 117 57.3
Lsat_1_v5_gn_8_153381 Lactuca sativa HOM05D004098 ORTHO05D005215 1.3e-20 105.9 144 46.5
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 5.6e-19 100.5 155 90.3
Lsat_1_v5_gn_2_71300 Lactuca sativa HOM05D004098 ORTHO05D005215 6.1e-18 97.1 91 57.1
HPP92_017856 Vanilla planifolia HOM05D004098 ORTHO05D005215 1.5e-16 92.4 115 49.6
Lsat_1_v5_gn_6_79681 Lactuca sativa HOM05D004098 ORTHO05D005215 5.8e-16 90.5 146 39.0
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 1.1e-14 86.3 154 83.8
Lsat_1_v5_gn_3_67900 Lactuca sativa HOM05D004098 ORTHO05D005215 1.0e-12 79.7 184 33.7
Gohir.A03G081400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.0e-12 78.2 60 70.0
Lsat_1_v5_gn_9_105500 Lactuca sativa HOM05D004098 ORTHO05D001482 7.3e-11 73.6 106 47.2
Cfa024256 Carpinus fangiana HOM05D032100 ORTHO05D126575 2.8e-10 71.6 206 28.6
BcaB05g22258 Brassica carinata HOM05D004098 ORTHO05D021823 8.9e-09 66.6 32 96.9
Haze_09931 Corylus avellana HOM05D000997 ORTHO05D000828 2.0e-08 65.5 109 43.1
Hund01805 Selenicereus undatus HOM05D004098 ORTHO05D005215 2.6e-08 65.1 41 73.2
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.9e-06 58.9 32 81.2
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 7.0e-06 57.0 31 80.6
Gohir.A09G249700 Gossypium hirsutum HOM05D004098 ORTHO05D021823 7.0e-06 57.0 32 78.1
Gohir.A10G243600 Gossypium hirsutum HOM05D004098 ORTHO05D005454 7.0e-06 57.0 25 96.0


User provided reference genes

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