Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 1.1e-86 323.2 156 100.0
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 1.1e-86 323.2 156 100.0
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 1.5e-75 286.2 156 91.0
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 1.5e-75 286.2 156 91.0
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 3.6e-69 265.0 129 99.2
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 9.0e-68 260.4 191 70.2
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 1.7e-66 256.1 156 81.4
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 1.7e-66 256.1 156 81.4
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 4.9e-58 228.0 127 87.4
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 6.4e-58 227.6 127 87.4
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 6.4e-58 227.6 127 86.6
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 1.1e-57 226.9 127 86.6
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 4.2e-57 224.9 127 86.6
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 9.3e-57 223.8 127 86.6
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 4.6e-56 221.5 127 84.3
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 7.9e-56 220.7 127 85.8
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 7.9e-56 220.7 127 85.0
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 1.0e-55 220.3 127 85.0
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 5.6e-54 214.5 127 82.7
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 4.0e-52 208.4 127 78.0
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 6.9e-52 207.6 127 78.0
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 6.9e-52 207.6 127 78.0
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.2e-51 206.8 127 78.0
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 2.0e-51 206.1 127 77.2
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 2.6e-51 205.7 127 77.2
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 2.6e-51 205.7 125 77.6
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 3.4e-51 205.3 127 75.6
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 3.4e-51 205.3 127 75.6
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 7.6e-51 204.1 127 76.4
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 9.9e-51 203.8 127 76.4
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 9.9e-51 203.8 127 76.4
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 1.3e-50 203.4 126 77.0
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 3.8e-50 201.8 127 74.8
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 4.9e-50 201.4 138 68.1
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 4.9e-50 201.4 127 74.8
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 4.9e-50 201.4 127 76.4
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 1.9e-49 199.5 127 75.6
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 2.4e-49 199.1 127 74.8
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 3.2e-49 198.7 127 74.8
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 4.2e-49 198.4 127 74.8
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 4.2e-49 198.4 127 76.4
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 5.5e-49 198.0 126 75.4
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 5.5e-49 198.0 127 73.2
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 7.1e-49 197.6 127 74.0
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 9.3e-49 197.2 127 73.2
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 9.3e-49 197.2 127 72.4
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 9.3e-49 197.2 127 74.0
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 1.2e-48 196.8 127 74.0
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 1.6e-48 196.4 138 68.8
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 1.6e-48 196.4 127 74.0
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 2.7e-48 195.7 127 74.0
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 2.7e-48 195.7 127 74.0
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 2.7e-48 195.7 127 74.0
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 2.7e-48 195.7 127 74.0
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 2.7e-48 195.7 127 74.0
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 2.7e-48 195.7 127 72.4
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 3.5e-48 195.3 137 67.2
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 3.5e-48 195.3 127 74.0
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.5e-48 195.3 127 73.2
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 4.6e-48 194.9 137 68.6
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 6.0e-48 194.5 127 73.2
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 6.0e-48 194.5 127 72.4
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 7.9e-48 194.1 122 76.2
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 7.9e-48 194.1 126 73.0
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 7.9e-48 194.1 127 73.2
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 1.0e-47 193.7 122 75.4
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 1.0e-47 193.7 127 73.2
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 1.0e-47 193.7 127 72.4
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 1.0e-47 193.7 126 75.4
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 1.0e-47 193.7 127 73.2
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 1.0e-47 193.7 127 73.2
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 1.8e-47 193.0 127 72.4
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 1.8e-47 193.0 127 70.1
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 1.8e-47 193.0 122 73.8
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 1.8e-47 193.0 127 73.2
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 2.3e-47 192.6 127 73.2
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 3.0e-47 192.2 126 74.6
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 3.0e-47 192.2 127 72.4
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 3.9e-47 191.8 126 74.6
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 3.9e-47 191.8 126 73.0
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 3.9e-47 191.8 127 72.4
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 3.9e-47 191.8 123 74.0
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 3.9e-47 191.8 127 71.7
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 5.1e-47 191.4 124 73.4
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 5.1e-47 191.4 127 72.4
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 1.1e-46 190.3 127 70.1
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 1.5e-46 189.9 122 73.0
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 1.5e-46 189.9 127 71.7
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 1.5e-46 189.9 127 70.9
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 2.5e-46 189.1 127 71.7
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 4.3e-46 188.3 124 71.0
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 9.6e-46 187.2 127 67.7
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 1.3e-45 186.8 127 69.3
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 1.3e-45 186.8 127 69.3
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 1.3e-45 186.8 126 69.0
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 1.6e-45 186.4 133 66.9
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 2.8e-45 185.7 132 65.9
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 2.8e-45 185.7 133 66.2
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 3.7e-45 185.3 127 70.1
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 4.8e-45 184.9 127 69.3
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 4.8e-45 184.9 127 68.5
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 6.2e-45 184.5 132 66.7
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 1.4e-44 183.3 127 69.3
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 2.4e-44 182.6 127 67.7
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 2.4e-44 182.6 122 69.7
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 3.1e-44 182.2 127 67.7
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 3.1e-44 182.2 127 68.5
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 6.9e-44 181.0 127 66.9
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 6.9e-44 181.0 127 68.5
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 9.0e-44 180.6 132 65.2
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 2.0e-43 179.5 127 67.7
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 8.4e-42 174.1 130 65.4
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 8.4e-42 174.1 129 65.9
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 1.4e-41 173.3 124 66.9
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 4.2e-41 171.8 132 64.4
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 2.7e-40 169.1 126 65.1
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 4.6e-40 168.3 126 64.3
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 6.0e-40 167.9 138 58.7
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 3.0e-39 165.6 127 63.0
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 4.3e-38 161.8 122 63.9
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.8e-37 158.3 129 59.7
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 6.3e-37 157.9 129 59.7
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 3.1e-36 155.6 120 63.3
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 3.4e-35 152.1 120 60.0
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 7.7e-35 151.0 124 56.5
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 7.7e-35 151.0 124 63.7
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 1.7e-34 149.8 135 54.8
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.1e-33 147.1 124 58.1
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 3.2e-33 145.6 125 57.6
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 3.9e-31 138.7 124 55.6
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 1.3e-29 133.7 79 81.0
Ca_03499_v3 Cicer arietinum L. HOM05D004694 ORTHO05D016782 2.6e-27 125.9 79 78.5
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 9.4e-25 117.5 111 55.0
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.6e-24 116.7 111 55.0
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.6e-24 116.7 111 55.0
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 6.7e-23 111.3 74 70.3
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 4.4e-22 108.6 82 67.1
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 2.1e-16 89.7 127 40.9
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 7.4e-14 81.3 123 35.0
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 1.3e-13 80.5 118 39.8
MD14G1161800 Malus domestica HOM05D004694 ORTHO05D016782 2.2e-13 79.7 61 62.3


User provided reference genes

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