Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 3.7e-266 921.0 467 100.0
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 1.3e-210 736.5 467 83.7
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 2.6e-187 659.1 448 79.0
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 1.2e-179 633.6 475 72.2
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 4.4e-179 631.7 476 71.4
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 1.9e-177 626.3 476 71.0
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 5.6e-174 614.8 478 71.1
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 1.2e-171 607.1 472 70.3
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 7.6e-171 604.4 472 70.6
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 9.3e-169 597.4 476 67.9
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 1.6e-168 596.7 502 65.3
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 4.6e-168 595.1 476 67.6
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 6.9e-164 581.3 474 67.3
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 2.9e-162 575.9 503 63.2
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 6.4e-162 574.7 470 65.7
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 9.3e-137 491.1 477 57.7
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 6.3e-125 451.8 472 53.0
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 2.8e-117 426.4 226 94.2
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 6.1e-112 408.7 463 54.0
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 1.3e-101 374.4 498 43.8
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 1.3e-101 374.4 502 44.8
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 4.8e-101 372.5 498 46.4
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 4.8e-101 372.5 491 43.4
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 9.1e-100 368.2 490 44.7
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 1.0e-98 364.8 499 43.3
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 1.5e-97 360.9 500 43.2
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 2.5e-97 360.1 489 44.0
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 4.2e-97 359.4 493 43.6
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 5.5e-97 359.0 497 42.1
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 5.5e-97 359.0 500 41.6
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 7.2e-97 358.6 486 43.6
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 9.4e-97 358.2 493 41.6
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.2e-96 357.8 493 41.6
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 1.2e-96 357.8 484 46.1
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 4.7e-96 355.9 486 44.4
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 1.0e-95 354.8 482 43.6
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 1.4e-95 354.4 482 42.7
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 2.3e-95 353.6 479 43.8
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 1.2e-94 351.3 480 44.6
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 2.0e-94 350.5 512 41.4
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 2.6e-94 350.1 492 42.9
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 3.4e-94 349.7 496 41.7
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 5.7e-94 349.0 471 42.7
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 5.7e-94 349.0 482 42.9
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 7.5e-94 348.6 492 42.7
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 7.5e-94 348.6 482 42.3
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 2.2e-93 347.1 475 45.3
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 1.4e-92 344.4 482 41.9
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 1.4e-92 344.4 487 43.7
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 5.4e-92 342.4 493 41.6
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 5.4e-92 342.4 504 42.7
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 1.6e-91 340.9 495 42.2
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 2.7e-91 340.1 484 43.0
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 5.9e-91 339.0 493 41.4
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 1.0e-90 338.2 449 43.9
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 1.3e-90 337.8 488 41.4
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 1.7e-90 337.4 472 44.1
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 1.1e-89 334.7 468 41.9
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 2.5e-89 333.6 486 41.6
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 4.2e-89 332.8 487 41.9
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 5.6e-89 332.4 495 41.4
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 7.2e-89 332.0 498 41.0
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 9.5e-89 331.6 475 41.9
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 2.1e-88 330.5 486 41.4
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 3.6e-88 329.7 433 45.0
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 3.6e-88 329.7 534 39.9
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 1.4e-87 327.8 496 41.1
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 8.9e-87 325.1 476 42.4
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 1.3e-85 321.2 302 53.6
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 2.2e-85 320.5 503 39.0
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 2.2e-85 320.5 486 39.7
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 6.4e-85 318.9 492 40.0
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 8.3e-85 318.5 509 40.1
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 3.2e-84 316.6 456 43.2
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 5.4e-84 315.8 500 40.6
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 5.4e-84 315.8 500 39.8
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 7.8e-83 312.0 498 41.4
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 3.9e-82 309.7 487 40.7
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 2.5e-81 307.0 328 48.8
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 8.0e-80 302.0 490 40.4
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 5.2e-79 299.3 502 39.8
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 1.7e-77 294.3 441 41.3
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 2.2e-77 293.9 518 39.4
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 1.4e-76 291.2 487 39.2
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 5.0e-74 282.7 510 35.1
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 5.0e-74 282.7 516 35.3
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 7.3e-73 278.9 503 35.0
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 7.3e-73 278.9 416 41.3
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 9.5e-73 278.5 542 34.3
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 2.1e-72 277.3 499 38.1
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 3.6e-72 276.6 448 39.1
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 6.8e-71 272.3 517 35.8
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 8.9e-71 271.9 494 37.0
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 2.6e-70 270.4 484 36.6
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 2.6e-70 270.4 508 35.2
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 4.4e-70 269.6 503 35.0
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 1.3e-69 268.1 534 36.0
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 4.9e-69 266.2 513 34.9
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 6.4e-69 265.8 486 35.8
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 7.1e-68 262.3 521 35.9
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 2.3e-66 257.3 541 33.5
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 5.1e-66 256.1 472 36.7
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 1.5e-65 254.6 494 33.8
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 4.7e-64 249.6 400 40.0
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 1.4e-63 248.1 532 33.6
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 5.2e-63 246.1 439 38.3
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 9.9e-62 241.9 501 33.9
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 1.3e-61 241.5 473 37.0
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 3.7e-61 240.0 532 33.6
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 6.4e-61 239.2 465 34.8
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 2.4e-60 237.3 519 34.1
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 2.4e-55 220.7 280 41.8
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 2.2e-53 214.2 582 30.6
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 3.8e-53 213.4 513 31.8
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 4.9e-53 213.0 500 31.2
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 8.7e-50 202.2 485 31.1
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 9.9e-46 188.7 458 30.6
AUR62033242 Chenopodium quinoa HOM05D008207 ORTHO05D010373 7.1e-44 182.6 330 38.2
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 1.3e-42 178.3 292 38.4
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 4.3e-41 173.3 479 29.9
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 1.3e-40 171.8 488 28.3
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 1.8e-39 167.9 174 48.9
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 2.4e-39 167.5 353 31.2
EL10Ac8g18309 Beta vulgaris HOM05D005537 ORTHO05D006776 6.9e-39 166.0 340 36.8
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 2.0e-38 164.5 402 29.9
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 8.7e-34 149.1 161 49.7
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 8.1e-32 142.5 431 27.4
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 3.1e-31 140.6 399 26.6
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 6.0e-27 126.3 134 50.7
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 2.5e-25 120.9 268 30.6
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 5.7e-25 119.8 170 37.6
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 6.9e-23 112.8 404 24.5
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 2.7e-19 100.9 81 55.6
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 2.7e-19 100.9 81 55.6
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 3.5e-19 100.5 165 35.8
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 1.8e-15 88.2 164 32.3
Glyma.17G055832 Glycine max HOM05D005537 ORTHO05D006776 4.8e-08 63.5 95 46.3
Oeu009853.2 Olea europaea HOM05D005537 ORTHO05D006776 1.8e-07 61.6 114 32.5
MSTRG.6231 Avicennia marina HOM05D005537 ORTHO05D006776 2.4e-07 61.2 83 44.6
Cfa026542 Carpinus fangiana HOM05D005537 ORTHO05D124841 4.5e-06 57.0 116 35.3


User provided reference genes

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