Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p09900 Brassica napus HOM05D005966 ORTHO05D007584 0.0e+00 1249.2 645 100.0
BolC3t13620H Brassica oleracea HOM05D005966 ORTHO05D007584 0.0e+00 1221.8 646 97.7
C03p11480 Brassica napus HOM05D005966 ORTHO05D007584 0.0e+00 1221.5 645 97.7
BraA03t10303Z Brassica rapa HOM05D005966 ORTHO05D007584 0.0e+00 1204.9 643 96.9
Sp6g24230 Schrenkiella parvula HOM05D005966 ORTHO05D007584 0.0e+00 1151.0 649 91.8
Thhalv10012923m.g Eutrema salsugineum HOM05D005966 ORTHO05D007584 0.0e+00 1145.6 649 91.7
AL6G31730 Arabidopsis lyrata HOM05D005966 ORTHO05D007584 0.0e+00 1122.5 650 89.5
Carub.0006s1857 Capsella rubella HOM05D005966 ORTHO05D007584 0.0e+00 1117.4 653 88.7
AT5G20170 Arabidopsis thaliana HOM05D005966 ORTHO05D007584 0.0e+00 1110.1 652 87.9
CARHR192650 Cardamine hirsuta HOM05D005966 ORTHO05D007584 0.0e+00 1100.9 652 87.6
Aa31LG1G14440 Aethionema arabicum HOM05D005966 ORTHO05D007584 3.4e-294 1014.6 657 81.0
THA.LOC104799647 Tarenaya hassleriana HOM05D005966 ORTHO05D007584 7.6e-254 880.6 656 72.1
Gorai.001G041100 Gossypium raimondii HOM05D005966 ORTHO05D007584 1.8e-223 779.6 663 63.2
Gohir.A07G035000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 4.5e-222 775.0 665 62.7
Duzib187G1826 Durio zibethinus HOM05D005966 ORTHO05D007584 6.5e-221 771.2 668 62.4
CiPaw.04G170200 Carya illinoinensis HOM05D005966 ORTHO05D007584 6.0e-219 764.6 660 62.3
Thecc.09G123800 Theobroma cacao HOM05D005966 ORTHO05D007584 6.0e-219 764.6 668 62.7
Cfa003353 Carpinus fangiana HOM05D005966 ORTHO05D007584 1.5e-217 760.0 661 60.8
Hma1.2p1_0018F.1_g012590 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 1.5e-217 760.0 664 61.0
Dinv36541 Davidia involucrata HOM05D005966 ORTHO05D007584 5.7e-217 758.1 663 61.5
Atru.chr7.1212 Acer truncatum HOM05D005966 ORTHO05D007584 1.3e-216 756.9 663 60.9
Haze_25609 Corylus avellana HOM05D005966 ORTHO05D007584 1.4e-215 753.4 674 59.9
Prupe.7G240500 Prunus persica HOM05D005966 ORTHO05D007584 1.9e-212 743.0 657 60.9
Ciclev10007689m.g Citrus clementina HOM05D005966 ORTHO05D007584 7.2e-212 741.1 664 59.5
MD15G1175600 Malus domestica HOM05D005966 ORTHO05D007584 9.3e-212 740.7 663 60.0
GSVIVG01015509001 Vitis vinifera HOM05D005966 ORTHO05D007584 1.6e-211 740.0 665 59.4
CsaV3_5G040100 Cucumis sativus L. HOM05D005966 ORTHO05D007584 3.9e-210 735.3 661 60.7
ClCG08G000940 Citrullus lanatus HOM05D005966 ORTHO05D007584 1.3e-208 730.3 661 60.7
Gorai.009G019100 Gossypium raimondii HOM05D005966 ORTHO05D007584 1.6e-208 729.9 674 59.8
MELO3C022187.2 Cucumis melo HOM05D005966 ORTHO05D007584 2.8e-208 729.2 660 60.0
FvH4_5g23630 Fragaria vesca HOM05D005966 ORTHO05D007584 1.1e-207 727.2 662 59.2
Gohir.A05G017800 Gossypium hirsutum HOM05D005966 ORTHO05D007584 1.8e-207 726.5 674 59.5
RcHm_v2.0_Chr7g0212931 Rosa chinensis HOM05D005966 ORTHO05D007584 3.1e-207 725.7 662 59.1
CANSAT11G2564 Cannabis sativa HOM05D005966 ORTHO05D007584 4.1e-207 725.3 664 59.8
Eucgr.C04186 Eucalyptus grandis HOM05D005966 ORTHO05D007584 5.3e-207 724.9 663 57.6
FAN13G2896 Fragaria x ananassa HOM05D005966 ORTHO05D007584 7.7e-206 721.1 662 58.9
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.0e-205 720.7 657 59.1
Gohir.D07G039000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 2.9e-205 719.2 665 59.8
Sed0002176 Sechium edule HOM05D005966 ORTHO05D007584 6.5e-205 718.0 660 60.3
Cc06_g08730 Coffea canephora HOM05D005966 ORTHO05D007584 2.5e-204 716.1 663 58.5
Potri.015G057100 Populus trichocarpa HOM05D005966 ORTHO05D007584 5.5e-204 714.9 667 58.6
DCAR_014873 Daucus carota HOM05D005966 ORTHO05D007584 1.2e-203 713.8 662 58.8
PGSC0003DMG400020667 Solanum tuberosum HOM05D005966 ORTHO05D007584 8.8e-202 707.6 659 59.0
CAN.G377.10 Capsicum annuum HOM05D005966 ORTHO05D007584 1.1e-201 707.2 660 58.8
Sopen12g002600 Solanum pennellii HOM05D005966 ORTHO05D007584 1.5e-201 706.8 659 59.0
Actinidia07431 Actinidia chinensis HOM05D005966 ORTHO05D007584 2.0e-201 706.4 659 57.7
Solyc12g006650.2 Solanum lycopersicum HOM05D005966 ORTHO05D007584 2.6e-201 706.1 659 58.9
Nitab4.5_0007523g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 1.7e-200 703.4 663 58.1
MSTRG.14036 Avicennia marina HOM05D005966 ORTHO05D007584 6.9e-199 698.0 665 56.4
Sabra15G0082400 Salix brachista HOM05D005966 ORTHO05D007584 1.2e-198 697.2 667 57.7
Nitab4.5_0010819g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 7.7e-198 694.5 666 57.5
Glyma.17G117600 Glycine max HOM05D005966 ORTHO05D007584 2.2e-197 693.0 655 58.5
Glyma.05G009700 Glycine max HOM05D005966 ORTHO05D007584 2.9e-197 692.6 656 58.2
Nn2g12002 Nelumbo nucifera HOM05D005966 ORTHO05D007584 3.8e-197 692.2 670 56.6
SGA_v2.0_scaffold163G38051 Striga asiatica HOM05D005966 ORTHO05D007584 1.1e-196 690.6 666 56.6
vmacro06121 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 1.1e-196 690.6 678 54.7
vmacro06181 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 1.1e-196 690.6 678 54.7
FAN18G2691 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.9e-196 689.9 636 58.8
arahy.Tifrunner.gnm1.ann1.QB31BF Arachis hypogaea HOM05D005966 ORTHO05D007584 4.2e-196 688.7 659 56.0
PGR102G3358 Punica granatum HOM05D005966 ORTHO05D007584 9.4e-196 687.6 664 56.5
VMungo1215G0752 Vigna mungo HOM05D005966 ORTHO05D007584 1.2e-195 687.2 659 57.5
Lj7C631G5 Lonicera japonica HOM05D005966 ORTHO05D007584 1.4e-194 683.7 755 51.9
Phvul.003G161800 Phaseolus vulgaris HOM05D005966 ORTHO05D007584 3.0e-194 682.6 659 57.7
Lj4g0014642 Lotus japonicus HOM05D005966 ORTHO05D007584 2.0e-193 679.9 654 56.9
arahy.Tifrunner.gnm1.ann1.Z0FLIL Arachis hypogaea HOM05D005966 ORTHO05D007584 3.3e-193 679.1 671 55.0
Actinidia26399 Actinidia chinensis HOM05D005966 ORTHO05D007584 1.3e-192 677.2 678 54.7
Lalb_Chr07g0178861 Lupinus albus HOM05D005966 ORTHO05D007584 2.2e-192 676.4 656 56.9
PSO170G3915 Papaver somniferum HOM05D005966 ORTHO05D007584 2.8e-192 676.0 667 54.9
Aqoxy5G00491 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 4.8e-192 675.2 669 54.9
PSO455G0207 Papaver somniferum HOM05D005966 ORTHO05D007584 8.2e-192 674.5 667 54.6
ECA236G0249 Erigeron canadensis HOM05D005966 ORTHO05D007584 7.0e-191 671.4 650 55.5
HanXRQChr04g0104201 Helianthus annuus HOM05D005966 ORTHO05D007584 2.0e-190 669.8 648 56.3
TPR.G10691 Trifolium pratense HOM05D005966 ORTHO05D007584 5.9e-190 668.3 664 55.9
QL02p087915 Quercus lobata HOM05D005966 ORTHO05D007584 7.7e-190 667.9 918 44.1
Manes.06G049700 Manihot esculenta HOM05D005966 ORTHO05D007584 1.3e-189 667.2 665 56.7
Medtr4g114100 Medicago truncatula HOM05D005966 ORTHO05D007584 1.3e-189 667.2 658 57.1
Psat4g039400 Pisum sativum HOM05D005966 ORTHO05D007584 5.0e-189 665.2 657 55.3
CSS0033485 Camellia sinensis var. sinensis HOM05D005966 ORTHO05D007584 4.7e-187 658.7 672 55.5
Migut.E01544 Erythranthe guttata HOM05D005966 ORTHO05D007584 8.0e-187 657.9 662 55.1
Lsat_1_v5_gn_8_59020 Lactuca sativa HOM05D005966 ORTHO05D007584 8.0e-187 657.9 663 54.4
Ca_21691_v3 Cicer arietinum L. HOM05D005966 ORTHO05D007584 1.0e-186 657.5 657 56.0
Peaxi162Scf00984g00027 Petunia axillaris HOM05D005966 ORTHO05D007584 3.0e-186 656.0 630 56.7
Oeu018459.1 Olea europaea HOM05D005966 ORTHO05D007584 1.2e-185 654.1 645 55.2
Oeu021589.1 Olea europaea HOM05D005966 ORTHO05D007584 2.0e-185 653.3 628 55.9
TAR636G0633 Trochodendron aralioides HOM05D005966 ORTHO05D007584 2.0e-185 653.3 631 56.4
SalBow1G1471 Salvia bowleyana HOM05D005966 ORTHO05D007584 8.2e-184 647.9 743 49.8
Gohir.D05G018700 Gossypium hirsutum HOM05D005966 ORTHO05D007584 5.3e-183 645.2 674 54.7
Hund26492 Selenicereus undatus HOM05D005966 ORTHO05D007584 2.1e-179 633.3 659 51.6
AUR62033484 Chenopodium quinoa HOM05D005966 ORTHO05D007584 3.1e-175 619.4 649 51.9
Rhsim03G0247300 Rhododendron simsii HOM05D005966 ORTHO05D007584 5.4e-175 618.6 589 57.6
AUR62011094 Chenopodium quinoa HOM05D005966 ORTHO05D007584 1.3e-173 614.0 649 51.3
Sabra15G0082900 Salix brachista HOM05D005966 ORTHO05D007584 2.3e-162 576.6 710 48.9
EL10Ac8g18623 Beta vulgaris HOM05D005966 ORTHO05D007584 1.2e-161 574.3 653 48.1
Ah.14g080180 Amaranthus hybridus HOM05D005966 ORTHO05D007584 3.4e-161 572.8 621 49.6
ATR1156G034 Amborella trichopoda HOM05D005966 ORTHO05D007584 1.7e-160 570.5 668 47.5
HPP92_009844 Vanilla planifolia HOM05D005966 ORTHO05D007584 2.4e-159 566.6 663 46.5
Os12g0638600 Oryza sativa ssp. japonica HOM05D005966 ORTHO05D007584 1.5e-148 530.8 660 44.4
MD02G1034800 Malus domestica HOM05D005966 ORTHO05D007584 7.3e-148 528.5 689 47.9
Cpa.g.sc75.51 Carica papaya HOM05D005966 ORTHO05D007584 4.1e-143 512.7 492 58.3
Zm00001eb207940 Zea mays HOM05D005966 ORTHO05D007584 2.1e-139 500.4 659 42.5
SEGI_37567 Sequoiadendron giganteum HOM05D005966 ORTHO05D007584 7.8e-134 481.9 716 40.2
unitig_578.g16582 Utricularia gibba HOM05D005966 ORTHO05D007584 4.4e-129 466.1 648 41.5
CDE01G0041 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 4.9e-128 462.6 554 46.9
Sc08g0006730 Simmondsia chinensis HOM05D005966 ORTHO05D007584 5.3e-122 442.6 520 46.9
Zm00001eb334260 Zea mays HOM05D005966 ORTHO05D007584 7.4e-108 395.6 535 43.4
Glyma.14G007400 Glycine max HOM05D005966 ORTHO05D007584 7.9e-94 349.0 298 62.4
SHI18656 Sapria himalayana HOM05D005966 ORTHO05D007584 1.7e-83 314.7 519 39.3
Mapoly0010s0026 Marchantia polymorpha HOM05D005966 ORTHO05D007584 2.5e-79 300.8 708 31.2
Pp3c3_25450 Physcomitrium patens HOM05D005966 ORTHO05D007584 1.8e-77 294.7 650 32.2
SMO200G0046 Selaginella moellendorffii HOM05D005966 ORTHO05D007584 2.2e-75 287.7 639 31.1
COL.COLO4_05778 Corchorus olitorius HOM05D005966 ORTHO05D007584 4.8e-75 286.6 407 45.2
FAN08G0676 Fragaria x ananassa HOM05D005966 ORTHO05D007584 4.8e-59 233.4 166 71.1
AagrBONN_evm.TU.Sc2ySwM_117.630 Anthoceros agrestis HOM05D005966 ORTHO05D007584 5.2e-45 186.8 480 30.8
Sc08g0006740 Simmondsia chinensis HOM05D005966 ORTHO05D007584 3.4e-44 184.1 139 69.8
SHI18657 Sapria himalayana HOM05D005966 ORTHO05D007584 2.6e-36 157.9 136 58.8
Cpa.g.sc75.52 Carica papaya HOM05D005966 ORTHO05D007584 1.9e-31 141.7 100 74.0
Dinv41526 Davidia involucrata HOM05D006513 ORTHO05D008150 1.2e-30 139.0 153 49.0
TAR625G1387 Trochodendron aralioides HOM05D005966 ORTHO05D007584 4.4e-28 130.6 366 31.4
CBR_g48370 Chara braunii HOM05D005966 ORTHO05D000048 5.8e-28 130.2 342 31.9
Aqoxy7G02129 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 4.9e-27 127.1 179 48.0
GSVIVG01027692001 Vitis vinifera HOM05D005966 ORTHO05D007584 1.1e-15 89.4 50 82.0
CAN.G925.3 Capsicum annuum HOM05D005966 ORTHO05D007584 7.3e-15 86.7 101 45.5
Hma1.2p1_0090F.1_g045710 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 1.1e-13 82.8 110 40.9
COL.COLO4_05779 Corchorus olitorius HOM05D005966 ORTHO05D007584 3.4e-12 77.8 58 58.6
CAN.G1289.8 Capsicum annuum HOM05D005966 ORTHO05D007584 1.7e-11 75.5 66 53.0
Lsat_1_v5_gn_8_82580 Lactuca sativa HOM05D005966 ORTHO05D007584 3.2e-10 71.2 49 71.4
CDE11G0857 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 1.1e-07 62.8 71 45.1
TAR626G0958 Trochodendron aralioides HOM05D005966 ORTHO05D007584 4.3e-07 60.8 37 78.4
TAR362G1246 Trochodendron aralioides HOM05D005966 ORTHO05D007584 9.6e-07 59.7 37 78.4


User provided reference genes

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