Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p08030 Brassica napus HOM05D002762 ORTHO05D008831 0.0e+00 1204.5 616 100.0
BraA03t10129Z Brassica rapa HOM05D002762 ORTHO05D008831 0.0e+00 1204.5 616 100.0
C03p09290 Brassica napus HOM05D002762 ORTHO05D008831 0.0e+00 1180.6 616 96.3
BolC3t13425H Brassica oleracea HOM05D002762 ORTHO05D008831 0.0e+00 1179.1 616 96.4
Sp6g27240 Schrenkiella parvula HOM05D002762 ORTHO05D008831 0.0e+00 1083.2 625 88.2
AL3G53900 Arabidopsis lyrata HOM05D002762 ORTHO05D008831 1.3e-300 1035.8 619 84.0
AT2G20790 Arabidopsis thaliana HOM05D002762 ORTHO05D008831 5.1e-300 1033.9 620 84.7
Thhalv10003762m.g Eutrema salsugineum HOM05D002762 ORTHO05D008831 1.5e-296 1022.3 620 83.7
CARHR111460 Cardamine hirsuta HOM05D002762 ORTHO05D008831 4.2e-294 1014.2 622 83.0
Aa31LG8G17700 Aethionema arabicum HOM05D002762 ORTHO05D008831 6.5e-287 990.3 626 81.0
THA.LOC104802606 Tarenaya hassleriana HOM05D002762 ORTHO05D008831 9.7e-283 976.5 619 78.2
Carub.0003s3536 Capsella rubella HOM05D002762 ORTHO05D008831 3.9e-268 927.9 559 84.4
Ciclev10004552m.g Citrus clementina HOM05D002762 ORTHO05D008831 4.7e-245 851.3 629 68.5
TWI53G0007 Tripterygium wilfordii HOM05D002762 ORTHO05D008831 8.0e-245 850.5 635 68.3
GSVIVG01017858001 Vitis vinifera HOM05D002762 ORTHO05D008831 4.0e-244 848.2 632 67.1
Thecc.04G271400 Theobroma cacao HOM05D002762 ORTHO05D008831 5.2e-244 847.8 635 67.6
CSS0041967 Camellia sinensis var. sinensis HOM05D002762 ORTHO05D008831 2.0e-243 845.9 633 66.8
TAR365G0003 Trochodendron aralioides HOM05D002762 ORTHO05D008831 1.7e-242 842.8 633 66.4
Rhsim04G0212200 Rhododendron simsii HOM05D002762 ORTHO05D008831 1.4e-241 839.7 629 66.0
QL06p006121 Quercus lobata HOM05D002762 ORTHO05D008831 7.0e-241 837.4 632 66.1
Actinidia40215 Actinidia chinensis HOM05D002762 ORTHO05D008831 2.0e-240 835.9 624 65.9
Gohir.A09G231700 Gossypium hirsutum HOM05D002762 ORTHO05D008831 3.5e-240 835.1 633 66.4
Gorai.006G255700 Gossypium raimondii HOM05D002762 ORTHO05D008831 4.5e-240 834.7 633 66.5
Gohir.D09G232800 Gossypium hirsutum HOM05D002762 ORTHO05D008831 3.8e-239 831.6 633 66.4
VMungo1215G1507 Vigna mungo HOM05D002762 ORTHO05D008831 4.3e-238 828.2 626 64.1
ClCG06G005650 Citrullus lanatus HOM05D002762 ORTHO05D008831 1.0e-236 823.5 633 64.3
Phvul.003G097700 Phaseolus vulgaris HOM05D002762 ORTHO05D008831 1.0e-236 823.5 627 64.0
Duzib212G0752 Durio zibethinus HOM05D002762 ORTHO05D008831 4.0e-236 821.6 636 65.3
Sopen01g032170 Solanum pennellii HOM05D002762 ORTHO05D008831 3.4e-235 818.5 630 64.8
CsaV3_6G005500 Cucumis sativus L. HOM05D002762 ORTHO05D008831 5.7e-235 817.8 633 64.3
Solyc01g080360.3 Solanum lycopersicum HOM05D002762 ORTHO05D008831 9.8e-235 817.0 630 64.8
Duzib052G0147 Durio zibethinus HOM05D002762 ORTHO05D008831 1.7e-234 816.2 633 65.1
CANSAT78G1603 Cannabis sativa HOM05D002762 ORTHO05D008831 2.2e-234 815.8 636 63.7
Haze_01004 Corylus avellana HOM05D002762 ORTHO05D008831 6.4e-234 814.3 679 61.3
CAN.G889.17 Capsicum annuum HOM05D002762 ORTHO05D008831 8.3e-234 813.9 631 64.2
FvH4_4g14000 Fragaria vesca HOM05D002762 ORTHO05D008831 1.1e-233 813.5 635 64.6
Potri.010G028600 Populus trichocarpa HOM05D002762 ORTHO05D008831 1.1e-233 813.5 638 64.3
Lj4g0021299 Lotus japonicus HOM05D002762 ORTHO05D008831 1.4e-233 813.1 625 64.2
Glyma.17G019900 Glycine max HOM05D002762 ORTHO05D008831 5.4e-233 811.2 629 63.8
FAN12G0174 Fragaria x ananassa HOM05D002762 ORTHO05D008831 5.9e-232 807.7 635 64.1
Lalb_Chr07g0177471 Lupinus albus HOM05D002762 ORTHO05D008831 5.9e-232 807.7 626 64.2
Ca_21567_v3 Cicer arietinum L. HOM05D002762 ORTHO05D008831 7.8e-232 807.4 624 64.4
MD16G1180200 Malus domestica HOM05D002762 ORTHO05D008831 1.0e-231 807.0 636 64.2
FAN22G0551 Fragaria x ananassa HOM05D002762 ORTHO05D008831 2.3e-231 805.8 635 63.9
COL.COLO4_13977 Corchorus olitorius HOM05D002762 ORTHO05D008831 3.9e-231 805.1 633 64.9
Medtr4g118010 Medicago truncatula HOM05D002762 ORTHO05D008831 5.0e-231 804.7 628 63.1
Psat4g031200 Pisum sativum HOM05D002762 ORTHO05D008831 6.6e-231 804.3 628 63.5
RcHm_v2.0_Chr4g0419641 Rosa chinensis HOM05D002762 ORTHO05D008831 1.1e-230 803.5 634 63.9
vmacro08246 Vaccinium macrocarpon HOM05D002762 ORTHO05D008831 1.1e-230 803.5 652 63.2
ATR0626G043 Amborella trichopoda HOM05D002762 ORTHO05D008831 2.5e-230 802.4 639 62.8
TPR.G28123 Trifolium pratense HOM05D002762 ORTHO05D008831 3.3e-230 802.0 625 63.7
FAN07G1246 Fragaria x ananassa HOM05D002762 ORTHO05D008831 7.3e-230 800.8 634 63.9
arahy.Tifrunner.gnm1.ann1.08LYWQ Arachis hypogaea HOM05D002762 ORTHO05D008831 9.5e-230 800.4 625 62.4
CSS0031724 Camellia sinensis var. sinensis HOM05D002762 ORTHO05D008831 1.2e-229 800.0 612 65.8
MBI19_g15847_MAGBIO Magnolia biondii HOM05D002762 ORTHO05D008831 3.6e-229 798.5 633 63.0
Cc03_g02810 Coffea canephora HOM05D002762 ORTHO05D008831 1.0e-228 797.0 630 63.2
MSTRG.3975 Avicennia marina HOM05D002762 ORTHO05D008831 4.0e-228 795.0 627 63.0
DCAR_030580 Daucus carota HOM05D002762 ORTHO05D008831 1.5e-227 793.1 626 62.8
Manes.03G187600 Manihot esculenta HOM05D002762 ORTHO05D008831 2.2e-226 789.3 616 64.6
Migut.G00243 Erythranthe guttata HOM05D002762 ORTHO05D008831 3.7e-226 788.5 627 61.7
Migut.G00245 Erythranthe guttata HOM05D002762 ORTHO05D008831 6.4e-226 787.7 627 61.6
Hund09035 Selenicereus undatus HOM05D002762 ORTHO05D008831 3.2e-225 785.4 630 62.9
SGA_v2.0_scaffold237G43848 Striga asiatica HOM05D002762 ORTHO05D008831 4.1e-225 785.0 619 63.2
Sed0011257 Sechium edule HOM05D002762 ORTHO05D008831 7.0e-225 784.3 633 63.5
HanXRQChr07g0192681 Helianthus annuus HOM05D002762 ORTHO05D008831 1.2e-224 783.5 629 63.3
PSO210G2175 Papaver somniferum HOM05D002762 ORTHO05D008831 2.0e-224 782.7 629 62.2
Sabra10G0012300 Salix brachista HOM05D002762 ORTHO05D008831 7.8e-224 780.8 650 61.4
Nitab4.5_0000894g0020 Nicotiana tabacum HOM05D002762 ORTHO05D008831 1.3e-223 780.0 612 63.2
EL10Ac8g18297 Beta vulgaris HOM05D002762 ORTHO05D008831 1.7e-223 779.6 638 61.4
AUR62033230 Chenopodium quinoa HOM05D002762 ORTHO05D008831 2.3e-223 779.2 632 61.4
Aqoxy5G00558 Aquilegia oxysepala HOM05D002762 ORTHO05D008831 5.0e-223 778.1 626 62.5
Eucgr.F00974 Eucalyptus grandis HOM05D002762 ORTHO05D008831 1.9e-222 776.2 603 64.8
PSO832G0886 Papaver somniferum HOM05D002762 ORTHO05D008831 5.6e-222 774.6 629 61.7
Lj6A665G69 Lonicera japonica HOM05D002762 ORTHO05D008831 3.6e-221 771.9 666 61.0
Sc19g0004720 Simmondsia chinensis HOM05D002762 ORTHO05D008831 3.6e-221 771.9 636 60.8
Oeu035631.1 Olea europaea HOM05D002762 ORTHO05D008831 3.1e-220 768.8 597 65.2
arahy.Tifrunner.gnm1.ann1.ZAIR7G Arachis hypogaea HOM05D002762 ORTHO05D008831 2.0e-219 766.1 615 61.3
Nn4g26133 Nelumbo nucifera HOM05D002762 ORTHO05D008831 2.6e-219 765.8 615 61.8
HPP92_018399 Vanilla planifolia HOM05D002762 ORTHO05D008831 2.9e-218 762.3 636 61.0
Lsat_1_v5_gn_6_14820 Lactuca sativa HOM05D002762 ORTHO05D008831 4.9e-218 761.5 627 62.2
CiPaw.01G157200 Carya illinoinensis HOM05D002762 ORTHO05D008831 6.4e-218 761.1 581 65.4
Peaxi162Scf00095g00610 Petunia axillaris HOM05D002762 ORTHO05D008831 5.6e-214 748.0 591 63.3
Sed0022901 Sechium edule HOM05D002762 ORTHO05D008831 8.9e-212 740.7 633 61.0
ECA233G1162 Erigeron canadensis HOM05D002762 ORTHO05D008831 3.4e-211 738.8 622 60.3
Nitab4.5_0000059g0110 Nicotiana tabacum HOM05D002762 ORTHO05D008831 1.4e-209 733.4 577 63.6
CDE11G0719 Ceratophyllum demersum HOM05D002762 ORTHO05D008831 7.8e-208 727.6 631 58.8
AUR62021313 Chenopodium quinoa HOM05D002762 ORTHO05D008831 1.5e-206 723.4 597 60.8
Zm00001eb410820 Zea mays HOM05D002762 ORTHO05D008831 3.4e-203 712.2 630 57.0
Prupe.1G147800 Prunus persica HOM05D002762 ORTHO05D008831 5.6e-190 668.3 632 54.3
unitig_899.g14405 Utricularia gibba HOM05D002762 ORTHO05D008831 6.9e-188 661.4 598 56.4
MELO3C021387.2 Cucumis melo HOM05D002762 ORTHO05D008831 1.6e-176 623.6 451 68.3
SMO115G0172 Selaginella moellendorffii HOM05D002762 ORTHO05D008831 1.2e-171 607.4 626 51.4
Dinv38356 Davidia involucrata HOM05D002762 ORTHO05D008831 1.9e-169 600.1 448 67.9
Ah.09g229990 Amaranthus hybridus HOM05D002762 ORTHO05D008831 9.0e-164 581.3 444 63.7
Mapoly0055s0097 Marchantia polymorpha HOM05D002762 ORTHO05D008831 1.5e-163 580.5 641 49.1
SEGI_30175 Sequoiadendron giganteum HOM05D002762 ORTHO05D008831 4.6e-160 568.9 493 58.6
Nn1g08335 Nelumbo nucifera HOM05D002762 ORTHO05D008831 4.7e-152 542.3 418 62.7
AagrBONN_evm.TU.Sc2ySwM_368.1411 Anthoceros agrestis HOM05D002762 ORTHO05D008831 6.7e-143 511.9 603 45.6
Cfa015544 Carpinus fangiana HOM05D002762 ORTHO05D008831 7.0e-140 501.9 406 63.3
Pp3c2_12250 Physcomitrium patens HOM05D002762 ORTHO05D008831 3.5e-139 499.6 620 45.5
SEGI_25743 Sequoiadendron giganteum HOM05D002762 ORTHO05D008831 1.8e-132 477.2 401 59.6
Eucgr.B01191 Eucalyptus grandis HOM05D002762 ORTHO05D008831 1.9e-129 467.2 419 58.0
CBR_g19730 Chara braunii HOM05D002762 ORTHO05D008831 1.9e-105 387.5 769 34.2
Cpa.g.sc16.61 Carica papaya HOM05D002762 ORTHO05D008831 1.1e-103 381.7 610 39.0
MD13G1179200 Malus domestica HOM05D002762 ORTHO05D008831 3.2e-100 370.2 420 51.0
BcaB01g05249 Brassica carinata HOM05D002762 ORTHO05D008831 3.5e-91 340.1 174 96.6
Actinidia23461 Actinidia chinensis HOM05D002762 ORTHO05D008831 3.8e-85 320.1 274 62.4
Os12g0528300 Oryza sativa ssp. japonica HOM05D002762 ORTHO05D008831 4.7e-43 180.3 172 52.9
SEGI_28752 Sequoiadendron giganteum HOM05D002762 ORTHO05D008831 1.2e-35 155.6 148 52.7
MD12G1098800 Malus domestica HOM05D002762 ORTHO05D008831 2.7e-35 154.5 211 41.2
MD12G1098700 Malus domestica HOM05D002762 ORTHO05D008831 7.4e-33 146.4 164 47.6
Actinidia23460 Actinidia chinensis HOM05D002762 ORTHO05D030920 6.1e-27 126.7 77 75.3
VMungo1215G0498 Vigna mungo HOM05D002762 ORTHO05D008831 1.1e-20 105.9 77 66.2
FAN17G1900 Fragaria x ananassa HOM05D002762 ORTHO05D030920 2.7e-14 84.7 83 55.4
COL.COLO4_28661 Corchorus olitorius HOM05D002762 ORTHO05D008831 6.5e-13 80.1 89 46.1
TWI09G1537 Tripterygium wilfordii HOM05D002762 ORTHO05D008831 1.5e-09 68.9 40 82.5
MD13G1179000 Malus domestica HOM05D002762 ORTHO05D030920 3.1e-07 61.2 35 74.3
Glyma.07G254400 Glycine max HOM05D002762 ORTHO05D004643 4.5e-06 57.4 45 60.0


User provided reference genes

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