Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 1.2e-167 593.2 310 100.0
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 1.7e-110 403.3 227 89.9
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 2.0e-90 336.7 194 89.2
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 2.0e-90 336.7 194 89.2
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 2.3e-83 313.2 195 83.1
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 3.0e-83 312.8 198 81.3
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 1.3e-81 307.4 195 81.5
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 1.3e-81 307.4 195 81.5
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 1.7e-81 307.0 194 81.4
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 4.8e-81 305.4 193 80.8
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 6.3e-81 305.1 195 81.0
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 1.1e-80 304.3 194 80.4
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 1.4e-80 303.9 195 81.0
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 1.4e-80 303.9 195 81.0
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 1.8e-80 303.5 193 79.3
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 1.8e-80 303.5 194 80.9
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 2.4e-80 303.1 193 79.8
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 2.4e-80 303.1 193 79.8
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 3.1e-80 302.8 193 79.3
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 9.1e-80 301.2 195 80.5
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 1.2e-79 300.8 195 80.5
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 7.2e-77 291.6 192 79.2
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 3.6e-76 289.3 194 77.8
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 1.0e-75 287.7 402 47.8
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 1.4e-75 287.3 195 77.4
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 1.5e-74 283.9 191 79.1
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 3.2e-69 266.2 194 70.6
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 5.2e-67 258.8 172 77.9
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 1.6e-60 237.3 194 64.4
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 6.1e-60 235.3 194 63.4
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 1.4e-59 234.2 194 63.4
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 5.2e-59 232.3 194 63.4
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 8.9e-59 231.5 194 63.9
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 1.2e-58 231.1 194 63.4
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 1.2e-58 231.1 194 63.4
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 1.2e-58 231.1 194 63.4
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 1.5e-58 230.7 194 62.9
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 2.0e-58 230.3 191 62.3
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 3.4e-58 229.6 194 63.9
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 3.4e-58 229.6 194 63.9
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 4.4e-58 229.2 194 62.9
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 5.7e-58 228.8 194 63.4
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 7.5e-58 228.4 194 62.4
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 9.8e-58 228.0 190 63.2
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 9.8e-58 228.0 194 60.8
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 9.8e-58 228.0 194 61.9
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 9.8e-58 228.0 194 61.9
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 1.7e-57 227.3 194 62.4
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 1.7e-57 227.3 199 62.3
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.7e-57 227.3 194 61.3
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 1.7e-57 227.3 193 61.7
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 2.2e-57 226.9 194 63.9
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 2.8e-57 226.5 191 63.9
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 2.8e-57 226.5 194 61.9
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 2.8e-57 226.5 194 60.8
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 3.7e-57 226.1 191 62.3
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 3.7e-57 226.1 194 62.4
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 4.9e-57 225.7 194 60.8
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 4.9e-57 225.7 194 61.3
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 8.3e-57 224.9 194 62.4
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.4e-56 224.2 191 62.8
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 1.4e-56 224.2 191 62.8
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 1.4e-56 224.2 194 61.3
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 1.8e-56 223.8 191 63.9
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 1.8e-56 223.8 194 60.8
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.8e-56 223.8 191 61.8
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 1.8e-56 223.8 194 60.3
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 2.4e-56 223.4 191 63.9
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 3.1e-56 223.0 194 62.4
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 3.1e-56 223.0 191 63.4
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 3.1e-56 223.0 194 59.8
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 4.1e-56 222.6 194 60.3
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 4.1e-56 222.6 194 60.3
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 4.1e-56 222.6 194 62.4
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 5.4e-56 222.2 194 62.4
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 5.4e-56 222.2 194 61.3
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 5.4e-56 222.2 194 62.4
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 7.0e-56 221.9 195 60.0
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 7.0e-56 221.9 194 59.8
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 7.0e-56 221.9 194 58.8
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 1.2e-55 221.1 194 61.3
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 1.2e-55 221.1 194 59.8
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 2.0e-55 220.3 194 60.3
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.7e-55 219.9 191 61.3
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 2.7e-55 219.9 194 60.3
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 3.5e-55 219.5 194 60.8
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 1.3e-54 217.6 194 59.3
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.3e-54 217.6 179 63.7
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.7e-54 217.2 194 58.2
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 2.9e-54 216.5 195 59.0
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 2.9e-54 216.5 194 58.8
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 2.9e-54 216.5 194 58.8
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 2.9e-54 216.5 195 61.0
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 2.9e-54 216.5 194 58.8
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 3.8e-54 216.1 194 58.2
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 5.0e-54 215.7 243 51.0
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 5.0e-54 215.7 195 59.0
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 5.0e-54 215.7 195 60.5
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 6.6e-54 215.3 194 60.3
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 6.6e-54 215.3 194 57.7
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 8.6e-54 214.9 194 59.3
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 8.6e-54 214.9 194 57.7
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 1.5e-53 214.2 194 59.3
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 1.9e-53 213.8 194 60.3
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 5.6e-53 212.2 171 65.5
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 7.3e-53 211.8 194 59.3
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 2.8e-52 209.9 191 60.2
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 3.6e-52 209.5 194 59.8
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 4.7e-52 209.1 179 63.7
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 1.4e-51 207.6 172 64.0
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 1.4e-51 207.6 188 58.0
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 1.5e-50 204.1 195 55.9
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 5.8e-50 202.2 191 58.1
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 2.9e-49 199.9 195 56.4
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 3.7e-49 199.5 228 51.3
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 1.6e-47 194.1 189 55.0
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 2.0e-47 193.7 188 54.3
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 2.7e-47 193.4 216 52.3
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 4.6e-47 192.6 154 67.5
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 3.0e-46 189.9 191 52.4
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 5.0e-46 189.1 189 56.1
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 6.6e-46 188.7 174 58.0
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 8.6e-46 188.3 195 56.4
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 1.9e-45 187.2 150 69.3
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 3.3e-45 186.4 149 69.8
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 6.8e-43 178.7 187 55.1
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 2.6e-42 176.8 103 88.3
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 9.8e-42 174.9 146 64.4
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 9.8e-42 174.9 185 52.4
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 4.1e-40 169.5 185 50.3
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 1.7e-38 164.1 151 59.6
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 3.9e-38 162.9 185 47.6
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.3e-37 159.8 194 47.9
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 2.3e-35 153.7 209 45.0
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 1.2e-34 151.4 185 47.0
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 1.2e-34 151.4 143 61.5
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 6.4e-33 145.6 75 93.3
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 7.1e-32 142.1 124 62.1
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 2.1e-31 140.6 126 61.9
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 2.4e-24 117.1 173 40.5
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 4.1e-24 116.3 166 43.4
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 2.2e-17 94.0 201 32.3
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 1.3e-14 84.7 82 50.0
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 4.0e-11 73.2 167 30.5
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 5.3e-11 72.8 90 51.1
EL10As11g23980 Beta vulgaris HOM05D004649 ORTHO05D005446 3.9e-06 56.6 38 68.4


User provided reference genes

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