Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p05770 Brassica napus HOM05D004119 ORTHO05D004797 0.0e+00 1268.1 622 100.0
BraA03t09916Z Brassica rapa HOM05D004119 ORTHO05D004797 0.0e+00 1257.7 621 99.2
BolC3t13178H Brassica oleracea HOM05D004119 ORTHO05D004797 0.0e+00 1187.2 630 93.2
C03p06720 Brassica napus HOM05D004119 ORTHO05D004797 0.0e+00 1176.8 635 92.0
BcaB01g05381 Brassica carinata HOM05D004119 ORTHO05D004797 0.0e+00 1135.6 633 90.4
Thhalv10012956m.g Eutrema salsugineum HOM05D004119 ORTHO05D004797 0.0e+00 1120.1 637 87.6
Sp6g30940 Schrenkiella parvula HOM05D004119 ORTHO05D004797 0.0e+00 1109.4 637 87.0
Carub.0006s1120 Capsella rubella HOM05D004119 ORTHO05D004797 0.0e+00 1097.0 638 85.3
CARHR200430 Cardamine hirsuta HOM05D004119 ORTHO05D004797 0.0e+00 1090.1 636 85.1
C09p64070 Brassica napus HOM05D004119 ORTHO05D004797 0.0e+00 1087.8 642 86.0
AT5G13030 Arabidopsis thaliana HOM05D004119 ORTHO05D004797 0.0e+00 1086.6 638 85.0
BolC9t59244H Brassica oleracea HOM05D004119 ORTHO05D004797 0.0e+00 1082.8 642 85.7
BraA10t44578Z Brassica rapa HOM05D004119 ORTHO05D004797 4.2e-310 1067.4 645 84.5
A10p25160 Brassica napus HOM05D004119 ORTHO05D004797 7.1e-310 1066.6 645 84.5
AL6G23620 Arabidopsis lyrata HOM05D004119 ORTHO05D004797 3.6e-301 1037.7 588 86.7
Aa31LG3G14630 Aethionema arabicum HOM05D004119 ORTHO05D004797 2.0e-296 1021.9 642 81.0
THA.LOC104811125 Tarenaya hassleriana HOM05D004119 ORTHO05D004797 4.5e-296 1020.8 650 79.5
TWI60G0817 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 3.1e-273 944.9 637 75.7
Atru.chr3.2433 Acer truncatum HOM05D004119 ORTHO05D004797 4.5e-272 941.0 618 76.2
Cpa.g.sc117.3 Carica papaya HOM05D004119 ORTHO05D004797 4.5e-272 941.0 576 79.2
Atru.chr3.2434 Acer truncatum HOM05D004119 ORTHO05D004797 1.7e-271 939.1 618 76.1
Potri.001G013900 Populus trichocarpa HOM05D004119 ORTHO05D004797 2.3e-271 938.7 610 75.6
GSVIVG01025352001 Vitis vinifera HOM05D004119 ORTHO05D004797 5.6e-270 934.1 625 74.2
CiPaw.14G126500 Carya illinoinensis HOM05D004119 ORTHO05D004797 9.5e-270 933.3 575 79.7
Dinv36315 Davidia involucrata HOM05D004119 ORTHO05D004797 9.5e-270 933.3 610 75.4
Sabra01G0010200 Salix brachista HOM05D004119 ORTHO05D004797 3.6e-269 931.4 603 76.3
Ciclev10014571m.g Citrus clementina HOM05D004119 ORTHO05D004797 1.4e-268 929.5 613 76.3
TWI32G0563 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 5.2e-268 927.5 628 74.4
MD03G1018700 Malus domestica HOM05D004119 ORTHO05D004797 6.8e-268 927.2 633 73.0
Thecc.09G219300 Theobroma cacao HOM05D004119 ORTHO05D004797 6.8e-268 927.2 640 73.0
CsaV3_1G042400 Cucumis sativus L. HOM05D004119 ORTHO05D004797 1.2e-267 926.4 580 77.8
CANSAT54G1702 Cannabis sativa HOM05D004119 ORTHO05D004797 2.0e-267 925.6 618 74.4
ClCG03G013650 Citrullus lanatus HOM05D004119 ORTHO05D004797 2.6e-267 925.2 580 77.4
PGR119G0026 Punica granatum HOM05D004119 ORTHO05D004797 3.4e-267 924.9 578 77.3
COL.COLO4_10388 Corchorus olitorius HOM05D004119 ORTHO05D004797 7.5e-267 923.7 585 77.9
CSS0046641 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 9.8e-267 923.3 545 82.2
QL01p009105 Quercus lobata HOM05D004119 ORTHO05D004797 9.8e-267 923.3 644 72.0
Duzib168G2002 Durio zibethinus HOM05D004119 ORTHO05D004797 2.2e-266 922.2 640 73.0
Manes.14G015300 Manihot esculenta HOM05D004119 ORTHO05D004797 2.2e-266 922.2 595 76.0
Prupe.6G017800 Prunus persica HOM05D004119 ORTHO05D004797 6.4e-266 920.6 647 72.8
Peaxi162Scf00403g00212 Petunia axillaris HOM05D004119 ORTHO05D004797 1.1e-265 919.8 621 72.8
MELO3C015675.2 Cucumis melo HOM05D004119 ORTHO05D004797 4.1e-265 917.9 619 74.0
Lalb_Chr02g0144391 Lupinus albus HOM05D004119 ORTHO05D004797 1.6e-264 916.0 572 78.5
MD11G1020700 Malus domestica HOM05D004119 ORTHO05D004797 2.0e-264 915.6 636 72.6
Nitab4.5_0001568g0150 Nicotiana tabacum HOM05D004119 ORTHO05D004797 2.7e-264 915.2 621 73.9
Hma1.2p1_1169F.1_g263240 Hydrangea macrophylla HOM05D004119 ORTHO05D004797 3.5e-264 914.8 621 71.8
FAN11G1732 Fragaria x ananassa HOM05D004119 ORTHO05D004797 7.8e-264 913.7 607 75.0
SalBow2G0171 Salvia bowleyana HOM05D004119 ORTHO05D004797 1.3e-263 912.9 655 70.2
FvH4_3g43840 Fragaria vesca HOM05D004119 ORTHO05D004797 1.7e-263 912.5 579 76.9
MSTRG.12487 Avicennia marina HOM05D004119 ORTHO05D004797 2.3e-263 912.1 614 73.5
Eucgr.B02600 Eucalyptus grandis HOM05D004119 ORTHO05D004797 2.3e-263 912.1 574 76.8
FAN25G0197 Fragaria x ananassa HOM05D004119 ORTHO05D004797 2.3e-263 912.1 620 74.2
CiPaw.13G168300 Carya illinoinensis HOM05D004119 ORTHO05D004797 5.0e-263 911.0 575 77.6
AUR62019225 Chenopodium quinoa HOM05D004119 ORTHO05D004797 5.0e-263 911.0 577 76.9
Lalb_Chr21g0307631 Lupinus albus HOM05D004119 ORTHO05D004797 1.1e-262 909.8 627 72.6
Haze_23030 Corylus avellana HOM05D004119 ORTHO05D004797 3.3e-262 908.3 641 71.6
AUR62000053 Chenopodium quinoa HOM05D004119 ORTHO05D004797 5.6e-262 907.5 577 76.9
RcHm_v2.0_Chr5g0079321 Rosa chinensis HOM05D004119 ORTHO05D004797 5.6e-262 907.5 614 73.8
PSO384G1641 Papaver somniferum HOM05D004119 ORTHO05D004797 2.8e-261 905.2 565 76.1
Cc01_g03810 Coffea canephora HOM05D004119 ORTHO05D004797 3.6e-261 904.8 590 74.2
Sopen01g002470 Solanum pennellii HOM05D004119 ORTHO05D004797 3.6e-261 904.8 575 76.9
HanXRQChr02g0056721 Helianthus annuus HOM05D004119 ORTHO05D004797 6.2e-261 904.0 551 78.4
SGA_v2.0_scaffold3G01554 Striga asiatica HOM05D004119 ORTHO05D004797 8.0e-261 903.7 656 70.3
CAN.G649.14 Capsicum annuum HOM05D004119 ORTHO05D004797 1.0e-260 903.3 622 72.5
Nitab4.5_0004389g0050 Nicotiana tabacum HOM05D004119 ORTHO05D004797 1.4e-260 902.9 609 72.2
Gorai.004G018600 Gossypium raimondii HOM05D004119 ORTHO05D004797 1.8e-260 902.5 618 72.3
Gohir.D08G023300 Gossypium hirsutum HOM05D004119 ORTHO05D004797 5.2e-260 901.0 618 72.2
DCAR_002029 Daucus carota HOM05D004119 ORTHO05D004797 6.8e-260 900.6 572 76.4
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 8.9e-260 900.2 604 73.3
Oeu043306.1 Olea europaea HOM05D004119 ORTHO05D004797 8.9e-260 900.2 591 74.6
Sed0015121 Sechium edule HOM05D004119 ORTHO05D004797 8.9e-260 900.2 580 75.7
Gohir.D05G069700 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.2e-259 899.8 587 75.1
Nn2g15648 Nelumbo nucifera HOM05D004119 ORTHO05D004797 2.0e-259 899.0 578 75.6
Solyc01g006490.4 Solanum lycopersicum HOM05D004119 ORTHO05D004797 2.0e-259 899.0 614 73.0
Gohir.A05G066800 Gossypium hirsutum HOM05D004119 ORTHO05D004797 4.4e-259 897.9 587 75.1
PSO339G4050 Papaver somniferum HOM05D004119 ORTHO05D004797 7.5e-259 897.1 586 73.7
Gohir.A08G012900 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.3e-258 896.3 638 70.2
Migut.N02286 Erythranthe guttata HOM05D004119 ORTHO05D004797 1.7e-258 896.0 633 70.9
Gorai.009G070700 Gossypium raimondii HOM05D004119 ORTHO05D004797 1.7e-258 896.0 587 75.0
Peaxi162Scf00062g01417 Petunia axillaris HOM05D004119 ORTHO05D004797 1.7e-258 896.0 625 71.0
VMungo0720G1960 Vigna mungo HOM05D004119 ORTHO05D004797 1.7e-258 896.0 618 72.0
PGSC0003DMG400032205 Solanum tuberosum HOM05D004119 ORTHO05D004797 2.2e-258 895.6 575 76.3
Phvul.007G003400 Phaseolus vulgaris HOM05D004119 ORTHO05D004797 4.9e-258 894.4 619 72.5
Aqoxy2G00086 Aquilegia oxysepala HOM05D004119 ORTHO05D004797 8.3e-258 893.6 624 71.5
ATR0605G198 Amborella trichopoda HOM05D004119 ORTHO05D004797 1.1e-257 893.3 549 78.3
Oeu055814.1 Olea europaea HOM05D004119 ORTHO05D004797 1.4e-257 892.9 584 75.5
Psat6g242880 Pisum sativum HOM05D004119 ORTHO05D004797 2.4e-257 892.1 564 76.1
Lj5g0022671 Lotus japonicus HOM05D004119 ORTHO05D004797 4.1e-257 891.3 606 72.6
Sed0006721 Sechium edule HOM05D004119 ORTHO05D004797 4.1e-257 891.3 584 74.8
HanXRQChr11g0345481 Helianthus annuus HOM05D004119 ORTHO05D004797 5.4e-257 891.0 572 75.0
Nitab4.5_0001146g0130 Nicotiana tabacum HOM05D004119 ORTHO05D004797 4.6e-256 887.9 630 71.1
vmacro12703 Vaccinium macrocarpon HOM05D004119 ORTHO05D004797 1.0e-255 886.7 530 80.6
ECA233G2530 Erigeron canadensis HOM05D004119 ORTHO05D004797 1.3e-255 886.3 562 76.7
Glyma.20G246800 Glycine max HOM05D004119 ORTHO05D004797 1.7e-255 885.9 545 78.9
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 1.5e-254 882.9 557 76.8
MSTRG.18400 Avicennia marina HOM05D004119 ORTHO05D004797 2.5e-254 882.1 586 73.5
Os06g0320700 Oryza sativa ssp. japonica HOM05D004119 ORTHO05D004797 4.3e-254 881.3 549 77.2
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 1.2e-253 879.8 599 73.8
ECA248G2677 Erigeron canadensis HOM05D004119 ORTHO05D004797 1.6e-253 879.4 558 75.8
Medtr1g116875 Medicago truncatula HOM05D004119 ORTHO05D004797 1.1e-252 876.7 619 71.1
HanXRQChr13g0404241 Helianthus annuus HOM05D004119 ORTHO05D004797 1.8e-252 875.9 620 70.8
Solyc12g100200.2 Solanum lycopersicum HOM05D004119 ORTHO05D004797 3.4e-251 871.7 616 70.3
TPR.G8893 Trifolium pratense HOM05D004119 ORTHO05D004797 2.2e-250 869.0 533 78.4
Sopen12g034830 Solanum pennellii HOM05D004119 ORTHO05D004797 3.7e-250 868.2 599 71.1
Lj1C433G5 Lonicera japonica HOM05D004119 ORTHO05D004797 7.8e-248 860.5 605 71.2
CAN.G575.41 Capsicum annuum HOM05D004119 ORTHO05D004797 6.6e-247 857.4 627 68.1
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 8.6e-247 857.1 710 63.0
CDE04G3728 Ceratophyllum demersum HOM05D004119 ORTHO05D004797 8.9e-244 847.0 534 76.0
HPP92_018953 Vanilla planifolia HOM05D004119 ORTHO05D004797 5.8e-243 844.3 547 75.3
Lsat_1_v5_gn_1_68000 Lactuca sativa HOM05D004119 ORTHO05D004797 1.4e-241 839.7 560 72.9
SEGI_31462 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 7.3e-238 827.4 616 66.4
Lj2C671G7 Lonicera japonica HOM05D004119 ORTHO05D004797 3.8e-234 815.1 572 71.0
Mapoly0063s0012 Marchantia polymorpha HOM05D004119 ORTHO05D004797 2.9e-226 788.9 616 63.3
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 6.4e-226 787.7 602 66.4
Pp3c9_22190 Physcomitrium patens HOM05D004119 ORTHO05D004797 2.4e-225 785.8 584 64.7
Hund21812 Selenicereus undatus HOM05D004119 ORTHO05D004797 1.2e-224 783.5 531 73.3
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 2.1e-224 782.7 526 73.8
AagrBONN_evm.TU.Sc2ySwM_344.3798 Anthoceros agrestis HOM05D004119 ORTHO05D004797 1.0e-223 780.4 550 68.9
Sc16g0011910 Simmondsia chinensis HOM05D004119 ORTHO05D004797 8.4e-218 760.8 450 82.9
MBI04_g46409_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 3.2e-217 758.8 549 69.6
Lj1A436T13 Lonicera japonica HOM05D004119 ORTHO05D004797 3.5e-216 755.4 449 81.7
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 3.8e-210 735.3 440 81.1
SMO134G0253 Selaginella moellendorffii HOM05D004119 ORTHO05D004797 4.8e-205 718.4 515 68.3
SEGI_38661 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 1.5e-187 660.2 452 70.1
TAR623G1465 Trochodendron aralioides HOM05D004119 ORTHO05D004797 7.4e-182 641.3 486 66.0
CBR_g38091 Chara braunii HOM05D004119 ORTHO05D004797 2.2e-181 639.8 535 60.4
Zm00001eb381770 Zea mays HOM05D004119 ORTHO05D004797 1.4e-164 583.9 363 77.7
PGR119G0420 Punica granatum HOM05D004119 ORTHO05D004797 3.3e-153 546.2 346 77.7
Nn7g36025 Nelumbo nucifera HOM05D004119 ORTHO05D004797 4.6e-147 525.8 575 51.1
Cre16.g648900 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 3.4e-142 509.6 567 47.6
EL10Ac4g10322 Beta vulgaris HOM05D004119 ORTHO05D004797 1.1e-137 494.6 366 69.7
CSS0049397 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 3.7e-133 479.6 279 82.4
arahy.Tifrunner.gnm1.ann1.ZPWD91 Arachis hypogaea HOM05D004119 ORTHO05D004797 5.4e-132 475.7 281 80.4
Oeu024459.1 Olea europaea HOM05D004119 ORTHO05D004797 3.0e-130 469.9 418 60.0
Dinv08059 Davidia involucrata HOM05D004119 ORTHO05D004797 6.2e-128 462.2 540 50.4
arahy.Tifrunner.gnm1.ann1.J6MIXF Arachis hypogaea HOM05D004119 ORTHO05D004797 2.5e-121 440.3 323 71.8
PRCOL_00001378 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 9.6e-113 411.8 573 42.2
Psat3g017080 Pisum sativum HOM05D004119 ORTHO05D004797 7.6e-102 375.6 287 63.1
Cre02.g108250 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 8.4e-93 345.5 646 36.1
FvH4_3g45150 Fragaria vesca HOM05D004119 ORTHO05D004797 1.6e-83 314.7 265 66.0
RcHm_v2.0_Chr5g0079021 Rosa chinensis HOM05D004119 ORTHO05D004797 1.8e-82 311.2 185 81.6
Cfa025573 Carpinus fangiana HOM05D004119 ORTHO05D004797 2.5e-81 307.4 595 35.1
Pp3s34_210 Physcomitrium patens HOM05D000198 ORTHO05D004797 1.7e-80 304.7 497 38.4
PRCOL_00005150 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 3.2e-76 290.4 584 34.8
Glyma.10G296266 Glycine max HOM05D004119 ORTHO05D004797 1.2e-75 288.5 189 74.6
RcHm_v2.0_Chr5g0079011 Rosa chinensis HOM05D004119 ORTHO05D004797 1.6e-75 288.1 180 77.2
TAR369G0071 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.4e-74 285.0 180 76.7
Lj1P432T25 Lonicera japonica HOM05D004119 ORTHO05D004797 1.1e-73 282.0 165 81.8
MCO09G196 Micromonas commoda HOM05D004119 ORTHO05D004797 9.4e-68 262.3 609 34.0
Psat3g137640 Pisum sativum HOM05D004119 ORTHO05D004797 5.9e-62 243.0 248 52.8
PRCOL_00005494 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.2e-59 235.3 588 31.6
TAR369G0199 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.4e-58 231.9 141 80.9
Actinidia39374 Actinidia chinensis HOM05D004119 ORTHO05D004797 1.3e-53 215.3 323 42.7
MD11G1020000 Malus domestica HOM05D004119 ORTHO05D004797 1.0e-45 189.1 120 78.3
TAR362G0095 Trochodendron aralioides HOM05D004119 ORTHO05D004797 4.2e-44 183.7 118 77.1
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 1.5e-41 175.3 106 77.4
Manes.06G169401 Manihot esculenta HOM05D004119 ORTHO05D004797 3.4e-41 174.1 107 79.4
VMungo0720G3038 Vigna mungo HOM05D004119 ORTHO05D004797 2.4e-39 167.9 154 57.1
TAR362G1239 Trochodendron aralioides HOM05D004119 ORTHO05D004797 4.0e-34 150.6 108 63.9
MBI04_g37845_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 1.1e-28 132.5 65 92.3
TPR.G14880 Trifolium pratense HOM05D004119 ORTHO05D004797 1.2e-27 129.0 81 70.4
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 3.6e-27 127.5 67 83.6
TAR369G0705 Trochodendron aralioides HOM05D004119 ORTHO05D004797 6.2e-27 126.7 99 61.6
Lsat_1_v5_gn_4_11801 Lactuca sativa HOM05D004119 ORTHO05D004797 4.4e-25 120.6 139 47.5
Lj1A436G11 Lonicera japonica HOM05D004119 ORTHO05D004797 7.5e-25 119.8 97 56.7
RcHm_v2.0_Chr5g0079031 Rosa chinensis HOM05D004119 ORTHO05D004797 1.8e-18 98.6 64 75.0
BraA01t00507Z Brassica rapa HOM05D004119 ORTHO05D004797 1.1e-12 79.3 56 73.2
TAR633G0263 Trochodendron aralioides HOM05D004119 ORTHO05D004797 8.9e-10 69.7 54 63.0
TPR.G25082 Trifolium pratense HOM05D004119 ORTHO05D004797 2.6e-09 68.2 82 50.0
HanXRQChr13g0426091 Helianthus annuus HOM05D004119 ORTHO05D004797 4.4e-09 67.4 38 76.3


User provided reference genes

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