Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p02950 Brassica napus HOM05D002376 ORTHO05D004654 3.2e-129 465.3 271 100.0
A04p23110 Brassica napus HOM05D002376 ORTHO05D004654 1.1e-124 450.3 267 98.5
BraA04t17841Z Brassica rapa HOM05D002376 ORTHO05D004654 3.5e-120 435.3 267 95.9
BcaB06g28361 Brassica carinata HOM05D002376 ORTHO05D004654 1.1e-110 403.7 278 89.6
C04p59280 Brassica napus HOM05D002376 ORTHO05D004654 1.1e-110 403.7 271 86.7
BcaC02g08025 Brassica carinata HOM05D002376 ORTHO05D004654 2.5e-110 402.5 271 83.4
BolC4t27433H Brassica oleracea HOM05D002376 ORTHO05D004654 3.8e-106 388.7 267 85.0
BcaC02g08029 Brassica carinata HOM05D002376 ORTHO05D004654 3.3e-102 375.6 273 80.6
Thhalv10016841m.g Eutrema salsugineum HOM05D002376 ORTHO05D004654 1.2e-96 357.1 287 76.0
BcaB01g04112 Brassica carinata HOM05D002376 ORTHO05D004654 3.6e-96 355.5 289 76.5
Sp4g12910 Schrenkiella parvula HOM05D002376 ORTHO05D004654 5.7e-94 348.2 292 76.7
A03p16960 Brassica napus HOM05D002376 ORTHO05D004654 6.3e-93 344.7 285 69.8
C03p19980 Brassica napus HOM05D002376 ORTHO05D004654 6.3e-93 344.7 272 73.2
BolC3t14376H Brassica oleracea HOM05D002376 ORTHO05D004654 6.3e-93 344.7 272 73.2
BcaC01g05989 Brassica carinata HOM05D002376 ORTHO05D004654 3.4e-91 339.0 273 73.3
Carub.0004s1150 Capsella rubella HOM05D002376 ORTHO05D004654 8.5e-82 307.8 298 64.8
CARHR123670 Cardamine hirsuta HOM05D002376 ORTHO05D004654 2.8e-77 292.7 284 70.1
AL4G25210 Arabidopsis lyrata HOM05D002376 ORTHO05D004654 1.3e-74 283.9 300 65.0
AT2G30350 Arabidopsis thaliana HOM05D002376 ORTHO05D004654 5.7e-70 268.5 290 62.1
C04p59230 Brassica napus HOM05D002376 ORTHO05D004654 9.7e-70 267.7 191 72.8
Aa31LG5G6350 Aethionema arabicum HOM05D002376 ORTHO05D004654 1.1e-68 264.2 280 56.4
THA.LOC104826270 Tarenaya hassleriana HOM05D002376 ORTHO05D004654 5.4e-60 235.3 281 49.5
QL01p025227 Quercus lobata HOM05D002376 ORTHO05D004654 9.8e-46 188.0 303 38.0
Cpa.g.sc2.324 Carica papaya HOM05D002376 ORTHO05D004654 2.9e-45 186.4 315 39.4
Cfa011807 Carpinus fangiana HOM05D002376 ORTHO05D004654 6.4e-45 185.3 300 39.7
Haze_24447 Corylus avellana HOM05D002376 ORTHO05D004654 1.4e-44 184.1 303 39.6
TWI79G1034 Tripterygium wilfordii HOM05D002376 ORTHO05D004654 6.0e-43 178.7 319 37.6
Ca_15029_v3 Cicer arietinum L. HOM05D002376 ORTHO05D004654 1.1e-41 174.5 295 40.3
Dinv28716 Davidia involucrata HOM05D002376 ORTHO05D004654 1.1e-41 174.5 291 40.2
Sc12g0000140 Simmondsia chinensis HOM05D002376 ORTHO05D004654 1.1e-41 174.5 292 36.0
Ciclev10001469m.g Citrus clementina HOM05D002376 ORTHO05D004654 7.3e-41 171.8 292 39.0
COL.COLO4_11190 Corchorus olitorius HOM05D002376 ORTHO05D004654 9.5e-41 171.4 104 73.1
Glyma.11G161200 Glycine max HOM05D002376 ORTHO05D004654 9.5e-41 171.4 299 37.8
MELO3C020503.2 Cucumis melo HOM05D002376 ORTHO05D004654 1.2e-40 171.0 314 37.6
ClCG03G000240 Citrullus lanatus HOM05D002376 ORTHO05D004654 2.1e-40 170.2 316 37.3
Eucgr.J01841 Eucalyptus grandis HOM05D002376 ORTHO05D004654 2.8e-40 169.9 279 37.3
CsaV3_1G036670 Cucumis sativus L. HOM05D002376 ORTHO05D004654 3.6e-40 169.5 317 36.9
Lalb_Chr15g0085961 Lupinus albus HOM05D002376 ORTHO05D004654 8.0e-40 168.3 307 40.7
Manes.18G137600 Manihot esculenta HOM05D002376 ORTHO05D004654 8.0e-40 168.3 104 72.1
arahy.Tifrunner.gnm1.ann1.WIJ2N1 Arachis hypogaea HOM05D002376 ORTHO05D004654 1.4e-39 167.5 310 38.7
Glyma.18G054900 Glycine max HOM05D002376 ORTHO05D004654 2.3e-39 166.8 298 36.6
CSS0050025 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D004654 6.8e-39 165.2 285 36.5
CANSAT54G2949 Cannabis sativa HOM05D002376 ORTHO05D004654 8.9e-39 164.9 104 72.1
PGSC0003DMG400020864 Solanum tuberosum HOM05D002376 ORTHO05D004654 8.9e-39 164.9 273 37.7
CSS0048295 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D004654 1.2e-38 164.5 286 38.5
Duzib168G1857 Durio zibethinus HOM05D002376 ORTHO05D004654 1.2e-38 164.5 104 70.2
VMungo0540G1534 Vigna mungo HOM05D002376 ORTHO05D004654 1.2e-38 164.5 303 41.9
Actinidia23178 Actinidia chinensis HOM05D002376 ORTHO05D004654 1.5e-38 164.1 284 39.4
Phvul.006G076300 Phaseolus vulgaris HOM05D002376 ORTHO05D004654 2.0e-38 163.7 299 37.5
Sopen09g014780 Solanum pennellii HOM05D002376 ORTHO05D004654 2.0e-38 163.7 288 37.5
Thecc.09G361600 Theobroma cacao HOM05D002376 ORTHO05D004654 2.0e-38 163.7 104 71.2
Lj6g0027008 Lotus japonicus HOM05D002376 ORTHO05D004654 2.6e-38 163.3 313 39.9
GSVIVG01024586001 Vitis vinifera HOM05D002376 ORTHO05D004654 5.8e-38 162.2 104 72.1
BolC9t57873H Brassica oleracea HOM05D002376 ORTHO05D004654 7.5e-38 161.8 92 82.6
Gohir.A13G235800 Gossypium hirsutum HOM05D002376 ORTHO05D004654 7.5e-38 161.8 102 71.6
Gohir.1Z049629 Gossypium hirsutum HOM05D002376 ORTHO05D004654 9.8e-38 161.4 102 71.6
Gohir.D04G000035 Gossypium hirsutum HOM05D002376 ORTHO05D004654 9.8e-38 161.4 102 71.6
Gorai.012G000400 Gossypium raimondii HOM05D002376 ORTHO05D004654 9.8e-38 161.4 102 71.6
Hma1.2p1_1637F.1_g294890 Hydrangea macrophylla HOM05D002376 ORTHO05D004654 9.8e-38 161.4 307 36.5
TAR369G0569 Trochodendron aralioides HOM05D002376 ORTHO05D004654 9.8e-38 161.4 292 39.0
C09p50170 Brassica napus HOM05D002376 ORTHO05D004654 1.3e-37 161.0 92 82.6
Peaxi162Scf01078g00415 Petunia axillaris HOM05D002376 ORTHO05D004654 1.7e-37 160.6 287 37.6
Sed0022472 Sechium edule HOM05D002376 ORTHO05D004654 1.7e-37 160.6 343 34.4
PGR119G0696 Punica granatum HOM05D002376 ORTHO05D004654 2.2e-37 160.2 283 37.5
Solyc09g031790.4 Solanum lycopersicum HOM05D002376 ORTHO05D004654 2.2e-37 160.2 104 69.2
TAR623G0587 Trochodendron aralioides HOM05D002376 ORTHO05D004654 2.2e-37 160.2 102 71.6
Hma1.2p1_2270F.1_g318510 Hydrangea macrophylla HOM05D002376 ORTHO05D004654 2.9e-37 159.8 288 37.5
Lsat_1_v5_gn_5_175220 Lactuca sativa HOM05D002376 ORTHO05D004654 6.4e-37 158.7 103 70.9
ECA248G1568 Erigeron canadensis HOM05D002376 ORTHO05D004654 8.3e-37 158.3 102 71.6
Gorai.013G272400 Gossypium raimondii HOM05D002376 ORTHO05D004654 1.1e-36 157.9 102 71.6
Potri.019G127600 Populus trichocarpa HOM05D002376 ORTHO05D004654 1.4e-36 157.5 101 68.3
Sabra13G0125800 Salix brachista HOM05D002376 ORTHO05D004654 1.4e-36 157.5 100 71.0
Medtr3g466410 Medicago truncatula HOM05D002376 ORTHO05D004654 1.9e-36 157.1 321 39.3
Nitab4.5_0000734g0130 Nicotiana tabacum HOM05D002376 ORTHO05D004654 1.9e-36 157.1 272 37.1
TPR.G24962 Trifolium pratense HOM05D002376 ORTHO05D004654 1.9e-36 157.1 320 42.5
vmacro14632 Vaccinium macrocarpon HOM05D002376 ORTHO05D004654 1.9e-36 157.1 100 71.0
Potri.013G155900 Populus trichocarpa HOM05D002376 ORTHO05D004654 2.4e-36 156.8 100 70.0
CDE04G2750 Ceratophyllum demersum HOM05D002376 ORTHO05D004654 4.1e-36 156.0 282 38.7
HanXRQChr01g0013301 Helianthus annuus HOM05D002376 ORTHO05D004654 4.1e-36 156.0 102 69.6
MD03G1055200 Malus domestica HOM05D002376 ORTHO05D004654 5.4e-36 155.6 322 35.4
Atru.chr1.2538 Acer truncatum HOM05D002376 ORTHO05D004654 7.0e-36 155.2 105 69.5
Nitab4.5_0002601g0080 Nicotiana tabacum HOM05D002376 ORTHO05D004654 9.2e-36 154.8 104 68.3
SGA_v2.0_scaffold6G03299 Striga asiatica HOM05D002376 ORTHO05D004654 1.2e-35 154.5 273 38.5
MD11G1056400 Malus domestica HOM05D002376 ORTHO05D004654 1.6e-35 154.1 316 34.8
PSO339G0904 Papaver somniferum HOM05D002376 ORTHO05D004654 1.6e-35 154.1 100 70.0
Rhsim01G0242200 Rhododendron simsii HOM05D002376 ORTHO05D004654 1.6e-35 154.1 101 69.3
Lalb_Chr20g0117351 Lupinus albus HOM05D002376 ORTHO05D004654 2.1e-35 153.7 102 68.6
Actinidia11613 Actinidia chinensis HOM05D000055 ORTHO05D000057 7.8e-35 151.8 279 39.1
Cc01_g15150 Coffea canephora HOM05D002376 ORTHO05D004654 7.8e-35 151.8 300 36.3
CAN.G473.25 Capsicum annuum HOM05D002376 ORTHO05D004654 1.3e-34 151.0 295 37.3
FAN25G0776 Fragaria x ananassa HOM05D002376 ORTHO05D004654 1.3e-34 151.0 338 34.0
RcHm_v2.0_Chr5g0072441 Rosa chinensis HOM05D002376 ORTHO05D004654 1.3e-34 151.0 336 34.2
Prupe.6G043600 Prunus persica HOM05D002376 ORTHO05D004654 1.7e-34 150.6 333 32.4
Aqoxy2G00731 Aquilegia oxysepala HOM05D002376 ORTHO05D004654 2.3e-34 150.2 101 67.3
AUR62036221 Chenopodium quinoa HOM05D002376 ORTHO05D004654 5.1e-34 149.1 104 65.4
Thecc.10G043800 Theobroma cacao HOM05D002376 ORTHO05D004654 5.1e-34 149.1 104 65.4
MSTRG.21249 Avicennia marina HOM05D002376 ORTHO05D004654 6.6e-34 148.7 101 69.3
AUR62009726 Chenopodium quinoa HOM05D002376 ORTHO05D004654 8.6e-34 148.3 104 65.4
Migut.D00832 Erythranthe guttata HOM05D002376 ORTHO05D004654 1.5e-33 147.5 100 69.0
PSO384G2467 Papaver somniferum HOM05D002376 ORTHO05D004654 1.5e-33 147.5 103 68.9
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 1.5e-33 147.5 102 63.7
FAN21G3096 Fragaria x ananassa HOM05D002376 ORTHO05D004654 2.5e-33 146.7 339 33.3
DCAR_004798 Daucus carota HOM05D002376 ORTHO05D004654 3.3e-33 146.4 292 34.9
FAN16G2868 Fragaria x ananassa HOM05D002376 ORTHO05D004654 3.3e-33 146.4 329 34.3
arahy.Tifrunner.gnm1.ann1.D8LDTS Arachis hypogaea HOM05D002376 ORTHO05D004654 4.3e-33 146.0 361 33.0
MSTRG.12701 Avicennia marina HOM05D002376 ORTHO05D004654 4.3e-33 146.0 100 68.0
EL10Ac7g15858 Beta vulgaris HOM05D002376 ORTHO05D004654 9.5e-33 144.8 104 62.5
FvH4_3g40230 Fragaria vesca HOM05D002376 ORTHO05D004654 9.5e-33 144.8 332 33.7
Aqoxy2G00736 Aquilegia oxysepala HOM05D002376 ORTHO05D004654 1.6e-32 144.1 100 66.0
Prupe.6G045800 Prunus persica HOM05D002376 ORTHO05D004654 1.6e-32 144.1 336 32.4
FAN11G3581 Fragaria x ananassa HOM05D002376 ORTHO05D004654 4.7e-32 142.5 329 34.0
ATR0681G169 Amborella trichopoda HOM05D002376 ORTHO05D004654 6.2e-32 142.1 100 67.0
Psat5g150440 Pisum sativum HOM05D002376 ORTHO05D004654 8.1e-32 141.7 299 38.5
Os07g0230500 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D004654 5.2e-31 139.0 97 66.0
Zm00001eb303730 Zea mays HOM05D002376 ORTHO05D004654 5.2e-31 139.0 99 66.7
Gohir.1Z049465 Gossypium hirsutum HOM05D002376 ORTHO05D004654 6.8e-31 138.7 102 63.7
Gohir.A08G000016 Gossypium hirsutum HOM05D002376 ORTHO05D004654 6.8e-31 138.7 102 63.7
unitig_747.g21450 Utricularia gibba HOM05D002376 ORTHO05D004654 8.9e-31 138.3 100 65.0
Nn5g26910 Nelumbo nucifera HOM05D002376 ORTHO05D004654 5.8e-30 135.6 287 38.7
Gorai.005G269000 Gossypium raimondii HOM05D002376 ORTHO05D004654 7.5e-30 135.2 90 67.8
Hund05050 Selenicereus undatus HOM05D002376 ORTHO05D004654 7.5e-30 135.2 104 59.6
Prupe.1G106000 Prunus persica HOM05D002376 ORTHO05D004654 8.3e-29 131.7 121 57.0
SHI19259 Sapria himalayana HOM05D002376 ORTHO05D004654 9.2e-28 128.3 293 33.8
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.0e-26 124.8 87 65.5
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.0e-26 124.8 87 65.5
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.5e-25 120.9 87 65.5
BcaC02g08132 Brassica carinata HOM05D002376 ORTHO05D004654 1.2e-24 117.9 114 58.8
BolC4t27329H Brassica oleracea HOM05D002376 ORTHO05D004654 1.2e-24 117.9 114 58.8
Mapoly0004s0007 Marchantia polymorpha HOM05D002376 ORTHO05D004654 1.6e-24 117.5 104 51.9
C02p16040 Brassica napus HOM05D002376 ORTHO05D004654 2.8e-24 116.7 114 63.2
C07p50650 Brassica napus HOM05D002376 ORTHO05D004654 2.8e-24 116.7 114 63.2
BolC7t45569H Brassica oleracea HOM05D002376 ORTHO05D004654 2.8e-24 116.7 114 63.2
Nn5g26899 Nelumbo nucifera HOM05D002376 ORTHO05D004654 6.2e-24 115.5 69 81.2
AagrBONN_evm.TU.Sc2ySwM_369.511 Anthoceros agrestis HOM05D002376 ORTHO05D004654 1.4e-23 114.4 100 53.0
CBR_g20119 Chara braunii HOM05D002376 ORTHO05D004654 2.4e-23 113.6 100 53.0
Prupe.1G108400 Prunus persica HOM05D002376 ORTHO05D004654 5.8e-22 109.0 86 59.3
SEGI_39190 Sequoiadendron giganteum HOM05D002376 ORTHO05D004654 7.6e-22 108.6 97 53.6
Pp3c10_1920 Physcomitrium patens HOM05D002376 ORTHO05D004654 1.7e-21 107.5 104 48.1
Oeu011367.1 Olea europaea HOM05D002376 ORTHO05D004654 2.2e-21 107.1 61 80.3
C09p15830 Brassica napus HOM05D001212 ORTHO05D000246 4.9e-21 105.9 61 83.6
Gorai.010G000700 Gossypium raimondii HOM05D002376 ORTHO05D004654 1.2e-19 101.3 80 60.0
SEGI_33829 Sequoiadendron giganteum HOM05D002376 ORTHO05D004654 4.6e-19 99.4 84 54.8
CBR_g31178 Chara braunii HOM05D002376 ORTHO05D004654 6.0e-19 99.0 102 46.1
Gohir.1Z049334 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.3e-18 97.1 73 61.6
CiPaw.14G052300 Carya illinoinensis HOM05D002376 ORTHO05D004654 1.1e-17 94.7 238 29.8
SMO364G0016 Selaginella moellendorffii HOM05D002376 ORTHO05D004654 2.5e-17 93.6 103 44.7
BcaC04g19883 Brassica carinata HOM05D002376 ORTHO05D004654 5.8e-14 82.4 48 81.2
Cre07.g351500 Chlamydomonas reinhardtii HOM05D002376 ORTHO05D004654 9.9e-14 81.6 101 44.6
MCO16G118 Micromonas commoda HOM05D002376 ORTHO05D004654 1.7e-13 80.9 101 47.5
Prupe.3G073500 Prunus persica HOM05D002376 ORTHO05D004654 2.4e-12 77.0 59 64.4
arahy.Tifrunner.gnm1.ann1.P4WV5Z Arachis hypogaea HOM05D000138 ORTHO05D000078 3.2e-12 76.6 45 77.8
Gohir.D13G241500 Gossypium hirsutum HOM05D002376 ORTHO05D004654 7.1e-12 75.5 50 64.0
arahy.Tifrunner.gnm1.ann1.S28F9G Arachis hypogaea HOM05D000138 ORTHO05D000078 1.2e-11 74.7 43 79.1
arahy.Tifrunner.gnm1.ann1.C6LA65 Arachis hypogaea HOM05D002376 ORTHO05D004654 1.6e-11 74.3 49 69.4
arahy.Tifrunner.gnm1.ann1.ANYB6V Arachis hypogaea HOM05D002376 ORTHO05D004654 2.7e-11 73.6 44 75.0
arahy.Tifrunner.gnm1.ann1.D1TE9J Arachis hypogaea HOM05D000138 ORTHO05D000078 2.7e-11 73.6 44 75.0
Gohir.A02G179401 Gossypium hirsutum HOM05D002376 ORTHO05D036218 1.0e-10 71.6 50 62.0
Cpa.g.sc2.244 Carica papaya HOM05D002376 ORTHO05D004654 1.7e-10 70.9 43 67.4
arahy.Tifrunner.gnm1.ann1.HWE26N Arachis hypogaea HOM05D002376 ORTHO05D004654 5.1e-10 69.3 43 69.8
PRCOL_00000864 Prasinoderma coloniale HOM05D002376 ORTHO05D004654 1.9e-09 67.4 113 34.5
BcaC06g30638 Brassica carinata HOM05D002376 ORTHO05D004654 2.1e-08 63.9 88 50.0
BcaNung03485 Brassica carinata HOM05D002376 ORTHO05D004654 5.8e-06 55.8 32 87.5


User provided reference genes

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