Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p02120 Brassica napus HOM05D002013 ORTHO05D028080 5.2e-84 314.3 156 100.0
BraA01t02524Z Brassica rapa HOM05D002013 ORTHO05D028080 5.2e-84 314.3 156 100.0
BolC3t17630H Brassica oleracea HOM05D002013 ORTHO05D028080 6.2e-45 184.5 104 89.4
C03p53700 Brassica napus HOM05D002013 ORTHO05D028080 1.3e-26 123.6 68 88.2
C01p23580 Brassica napus HOM05D000313 ORTHO05D000065 2.5e-25 119.4 71 84.5
CARHR264700 Cardamine hirsuta HOM05D002013 ORTHO05D002293 4.2e-25 118.6 122 55.7
AT5G51820 Arabidopsis thaliana HOM05D002013 ORTHO05D002293 6.1e-24 114.8 122 54.9
Carub.0008s1184 Capsella rubella HOM05D002013 ORTHO05D002293 1.4e-23 113.6 115 57.4
Aa31LG3G8260 Aethionema arabicum HOM05D002013 ORTHO05D002293 1.8e-23 113.2 115 56.5
A10p09650 Brassica napus HOM05D002013 ORTHO05D002293 1.8e-23 113.2 115 57.4
BraA10t43046Z Brassica rapa HOM05D002013 ORTHO05D002293 1.8e-23 113.2 115 57.4
Thhalv10012968m.g Eutrema salsugineum HOM05D002013 ORTHO05D002293 1.8e-23 113.2 115 57.4
AL8G26110 Arabidopsis lyrata HOM05D002013 ORTHO05D002293 2.3e-23 112.8 115 57.4
BcaB08g35534 Brassica carinata HOM05D002013 ORTHO05D002293 2.3e-23 112.8 108 60.2
Sp6g14070 Schrenkiella parvula HOM05D002013 ORTHO05D002293 8.8e-23 110.9 115 56.5
BcaC04g20630 Brassica carinata HOM05D002013 ORTHO05D002293 1.1e-22 110.5 115 56.5
C09p41310 Brassica napus HOM05D002013 ORTHO05D002293 1.1e-22 110.5 115 56.5
BolC9t57005H Brassica oleracea HOM05D002013 ORTHO05D002293 1.1e-22 110.5 115 56.5
THA.LOC104811497 Tarenaya hassleriana HOM05D002013 ORTHO05D002293 1.1e-22 110.5 115 55.7
GSVIVG01018452001 Vitis vinifera HOM05D002013 ORTHO05D002293 3.7e-21 105.5 122 51.6
MSTRG.116 Avicennia marina HOM05D002013 ORTHO05D002293 4.8e-21 105.1 115 53.0
Ciclev10004539m.g Citrus clementina HOM05D002013 ORTHO05D002293 1.4e-20 103.6 134 47.8
Gohir.A12G262400 Gossypium hirsutum HOM05D002013 ORTHO05D002293 1.8e-20 103.2 122 49.2
Gohir.D12G263100 Gossypium hirsutum HOM05D002013 ORTHO05D002293 1.8e-20 103.2 122 49.2
Lj5g0007692 Lotus japonicus HOM05D002013 ORTHO05D002293 1.8e-20 103.2 127 50.4
Gorai.008G282000 Gossypium raimondii HOM05D002013 ORTHO05D002293 2.4e-20 102.8 122 49.2
PSO782G2538 Papaver somniferum HOM05D002013 ORTHO05D002293 2.4e-20 102.8 108 54.6
Actinidia25054 Actinidia chinensis HOM05D002013 ORTHO05D002293 3.1e-20 102.4 122 50.8
Aqoxy7G00507 Aquilegia oxysepala HOM05D002013 ORTHO05D002293 5.3e-20 101.7 122 49.2
EL10Ac3g05745 Beta vulgaris HOM05D002013 ORTHO05D002293 5.3e-20 101.7 119 51.3
AUR62016062 Chenopodium quinoa HOM05D002013 ORTHO05D002293 9.1e-20 100.9 115 50.4
PSO478G2350 Papaver somniferum HOM05D002013 ORTHO05D002293 9.1e-20 100.9 108 53.7
C08p10540 Brassica napus HOM05D000313 ORTHO05D000065 1.2e-19 100.5 71 74.6
ClCG01G005310 Citrullus lanatus HOM05D002013 ORTHO05D002293 1.2e-19 100.5 91 58.2
SalBow2G1863 Salvia bowleyana HOM05D002013 ORTHO05D002293 1.2e-19 100.5 115 51.3
Sed0022212 Sechium edule HOM05D002013 ORTHO05D002293 1.2e-19 100.5 91 58.2
arahy.Tifrunner.gnm1.ann1.7Q0HRU Arachis hypogaea HOM05D002013 ORTHO05D002293 1.5e-19 100.1 127 48.8
Potri.015G134700 Populus trichocarpa HOM05D002013 ORTHO05D002293 1.5e-19 100.1 122 49.2
Sabra15G0146800 Salix brachista HOM05D002013 ORTHO05D002293 1.5e-19 100.1 122 49.2
SGA_v2.0_scaffold10G05431 Striga asiatica HOM05D002013 ORTHO05D002293 1.5e-19 100.1 141 47.5
Thecc.03G166400 Theobroma cacao HOM05D002013 ORTHO05D002293 1.5e-19 100.1 122 49.2
arahy.Tifrunner.gnm1.ann1.23AQDA Arachis hypogaea HOM05D002013 ORTHO05D002293 2.0e-19 99.8 101 55.4
CiPaw.03G099800 Carya illinoinensis HOM05D002013 ORTHO05D002293 2.0e-19 99.8 122 49.2
Nn1g01272 Nelumbo nucifera HOM05D002013 ORTHO05D002293 2.0e-19 99.8 136 48.5
Peaxi162Scf00192g00524 Petunia axillaris HOM05D002013 ORTHO05D002293 2.0e-19 99.8 115 50.4
CsaV3_5G005570 Cucumis sativus L. HOM05D002013 ORTHO05D002293 2.6e-19 99.4 115 51.3
Dinv35135 Davidia involucrata HOM05D002013 ORTHO05D002293 2.6e-19 99.4 122 49.2
Rhsim03G0174400 Rhododendron simsii HOM05D002013 ORTHO05D002293 2.6e-19 99.4 115 51.3
Sed0000426 Sechium edule HOM05D002013 ORTHO05D002293 2.6e-19 99.4 115 50.4
MELO3C005396.2 Cucumis melo HOM05D002013 ORTHO05D002293 3.5e-19 99.0 115 51.3
Lalb_Chr02g0140861 Lupinus albus HOM05D002013 ORTHO05D002293 3.5e-19 99.0 127 48.8
Mapoly0202s0014 Marchantia polymorpha HOM05D002013 ORTHO05D002293 3.5e-19 99.0 108 53.7
Glyma.10G241000 Glycine max HOM05D002013 ORTHO05D002293 4.5e-19 98.6 127 49.6
Nn6g34328 Nelumbo nucifera HOM05D002013 ORTHO05D002293 4.5e-19 98.6 115 50.4
Solyc03g006870.3 Solanum lycopersicum HOM05D002013 ORTHO05D002293 4.5e-19 98.6 115 50.4
Sopen03g002870 Solanum pennellii HOM05D002013 ORTHO05D002293 4.5e-19 98.6 115 50.4
VMungo0720G0097 Vigna mungo HOM05D002013 ORTHO05D002293 4.5e-19 98.6 127 49.6
Manes.06G141300 Manihot esculenta HOM05D002013 ORTHO05D002293 5.9e-19 98.2 122 48.4
AUR62021270 Chenopodium quinoa HOM05D002013 ORTHO05D002293 7.7e-19 97.8 115 50.4
Potri.012G132500 Populus trichocarpa HOM05D002013 ORTHO05D002293 7.7e-19 97.8 115 52.2
Sabra12G0099800 Salix brachista HOM05D002013 ORTHO05D002293 7.7e-19 97.8 115 52.2
vmacro06735 Vaccinium macrocarpon HOM05D002013 ORTHO05D002293 7.7e-19 97.8 87 58.6
QL09p015187 Quercus lobata HOM05D002013 ORTHO05D002293 1.0e-18 97.4 134 47.0
CAN.G1182.5 Capsicum annuum HOM05D002013 ORTHO05D002293 1.3e-18 97.1 115 49.6
Duzib205G1422 Durio zibethinus HOM05D002013 ORTHO05D002293 1.3e-18 97.1 115 50.4
Hma1.2p1_0488F.1_g163920 Hydrangea macrophylla HOM05D002013 ORTHO05D002293 1.3e-18 97.1 122 49.2
MD01G1192300 Malus domestica HOM05D002013 ORTHO05D002293 1.3e-18 97.1 122 50.0
TPR.G17409 Trifolium pratense HOM05D002013 ORTHO05D002293 1.3e-18 97.1 115 50.4
Duzib084G0436 Durio zibethinus HOM05D002013 ORTHO05D002293 1.7e-18 96.7 122 47.5
MD00G1003800 Malus domestica HOM05D002013 ORTHO05D002293 1.7e-18 96.7 122 50.0
Hund04681 Selenicereus undatus HOM05D002013 ORTHO05D002293 1.7e-18 96.7 115 50.4
Cfa008255 Carpinus fangiana HOM05D002013 ORTHO05D002293 2.2e-18 96.3 122 48.4
FvH4_7g28680 Fragaria vesca HOM05D002013 ORTHO05D002293 2.2e-18 96.3 84 60.7
FAN06G1582 Fragaria x ananassa HOM05D002013 ORTHO05D002293 2.2e-18 96.3 84 60.7
Glyma.20G153600 Glycine max HOM05D002013 ORTHO05D002293 2.2e-18 96.3 127 48.8
Phvul.007G064900 Phaseolus vulgaris HOM05D002013 ORTHO05D002293 2.2e-18 96.3 115 50.4
Prupe.2G286900 Prunus persica HOM05D002013 ORTHO05D002293 2.2e-18 96.3 122 49.2
TAR629G0633 Trochodendron aralioides HOM05D002013 ORTHO05D002293 2.2e-18 96.3 91 56.0
Ah.07g208780 Amaranthus hybridus HOM05D002013 ORTHO05D002293 2.9e-18 95.9 115 49.6
Manes.14G031100 Manihot esculenta HOM05D002013 ORTHO05D002293 2.9e-18 95.9 122 48.4
Medtr1g102010 Medicago truncatula HOM05D002013 ORTHO05D002293 2.9e-18 95.9 115 50.4
Sc25g0000300 Simmondsia chinensis HOM05D002013 ORTHO05D002293 3.8e-18 95.5 119 48.7
TWI39G1060 Tripterygium wilfordii HOM05D002013 ORTHO05D002293 3.8e-18 95.5 116 50.0
Actinidia13540 Actinidia chinensis HOM05D002013 ORTHO05D002293 5.0e-18 95.1 80 63.8
COL.COLO4_14225 Corchorus olitorius HOM05D002013 ORTHO05D002293 5.0e-18 95.1 77 64.9
Eucgr.K00185 Eucalyptus grandis HOM05D002013 ORTHO05D002293 5.0e-18 95.1 127 46.5
Nitab4.5_0000599g0060 Nicotiana tabacum HOM05D002013 ORTHO05D002293 5.0e-18 95.1 115 48.7
Os10g0189100 Oryza sativa ssp. japonica HOM05D002013 ORTHO05D002293 5.0e-18 95.1 108 51.9
Haze_13794 Corylus avellana HOM05D002013 ORTHO05D002293 6.5e-18 94.7 122 46.7
FAN10G1867 Fragaria x ananassa HOM05D002013 ORTHO05D002293 8.5e-18 94.4 108 52.8
Lsat_1_v5_gn_9_52960 Lactuca sativa HOM05D002013 ORTHO05D002293 8.5e-18 94.4 113 48.7
Ca_10817_v3 Cicer arietinum L. HOM05D002013 ORTHO05D002293 1.1e-17 94.0 115 50.4
ECA232G3070 Erigeron canadensis HOM05D002013 ORTHO05D002293 1.1e-17 94.0 109 51.4
RcHm_v2.0_Chr1g0376171 Rosa chinensis HOM05D002013 ORTHO05D002293 1.1e-17 94.0 115 50.4
SMO356G0067 Selaginella moellendorffii HOM05D002013 ORTHO05D002293 1.1e-17 94.0 127 47.2
Cpa.g.sc4.193 Carica papaya HOM05D002013 ORTHO05D002293 1.4e-17 93.6 122 47.5
CDE04G0092 Ceratophyllum demersum HOM05D002013 ORTHO05D002293 1.4e-17 93.6 115 47.0
FAN06G4852 Fragaria x ananassa HOM05D002013 ORTHO05D002293 1.4e-17 93.6 84 59.5
Zm00001eb159720 Zea mays HOM05D002013 ORTHO05D002293 1.4e-17 93.6 115 47.8
Cc02_g03610 Coffea canephora HOM05D002013 ORTHO05D002293 2.5e-17 92.8 108 50.0
Lj8C32T3 Lonicera japonica HOM05D002013 ORTHO05D002293 2.5e-17 92.8 136 46.3
Pp3c15_3340 Physcomitrium patens HOM05D002013 ORTHO05D002293 2.5e-17 92.8 108 50.0
AagrBONN_evm.TU.Sc2ySwM_228.3944 Anthoceros agrestis HOM05D002013 ORTHO05D002293 5.5e-17 91.7 108 50.9
HanXRQChr14g0439791 Helianthus annuus HOM05D002013 ORTHO05D002293 7.2e-17 91.3 109 51.4
DCAR_028187 Daucus carota HOM05D002013 ORTHO05D002293 9.4e-17 90.9 91 53.8
Pp3c9_5060 Physcomitrium patens HOM05D002013 ORTHO05D002293 9.4e-17 90.9 108 49.1
CDE06G2106 Ceratophyllum demersum HOM05D002013 ORTHO05D002293 1.2e-16 90.5 115 47.0
FAN03G0561 Fragaria x ananassa HOM05D002013 ORTHO05D002293 4.7e-16 88.6 101 52.5
Psat6g201960 Pisum sativum HOM05D002013 ORTHO05D002293 4.7e-16 88.6 127 46.5
FAN03G2937 Fragaria x ananassa HOM05D002013 ORTHO05D002293 8.0e-16 87.8 101 52.5
SEGI_07304 Sequoiadendron giganteum HOM05D002013 ORTHO05D002293 2.3e-15 86.3 112 47.3
Oeu030143.4 Olea europaea HOM05D002013 ORTHO05D002293 8.8e-15 84.3 89 53.9
Migut.F01162 Erythranthe guttata HOM05D002013 ORTHO05D002293 2.0e-14 83.2 88 54.5
ATR0661G181 Amborella trichopoda HOM05D002013 ORTHO05D002293 2.2e-13 79.7 125 44.0
FAN12G3228 Fragaria x ananassa HOM05D002013 ORTHO05D002293 4.8e-13 78.6 82 51.2
Cre06.g278210 Chlamydomonas reinhardtii HOM05D002013 ORTHO05D002293 6.3e-13 78.2 112 44.6
FAN17G0813 Fragaria x ananassa HOM05D002013 ORTHO05D002293 6.3e-13 78.2 82 51.2
FAN22G1530 Fragaria x ananassa HOM05D002013 ORTHO05D002293 6.3e-13 78.2 82 51.2
Sabra08G0101100 Salix brachista HOM05D002013 ORTHO05D002293 6.3e-13 78.2 118 39.8
FvH4_4g33980 Fragaria vesca HOM05D002013 ORTHO05D002293 8.2e-13 77.8 82 51.2
FAN07G1563 Fragaria x ananassa HOM05D002013 ORTHO05D002293 8.2e-13 77.8 82 51.2
RcHm_v2.0_Chr4g0443511 Rosa chinensis HOM05D002013 ORTHO05D002293 1.4e-12 77.0 117 41.0
unitig_52.g17280 Utricularia gibba HOM05D002013 ORTHO05D002293 1.4e-12 77.0 120 39.2
SalBow2G1815 Salvia bowleyana HOM05D002013 ORTHO05D002293 1.8e-12 76.6 84 47.6
Sed0016089 Sechium edule HOM05D002013 ORTHO05D002293 3.1e-12 75.9 82 48.8
CBR_g20360 Chara braunii HOM05D002013 ORTHO05D002293 4.1e-12 75.5 108 43.5
MCO01G760 Micromonas commoda HOM05D002013 ORTHO05D002293 5.3e-12 75.1 107 43.0
GSVIVG01011700001 Vitis vinifera HOM05D002013 ORTHO05D002293 5.3e-12 75.1 118 39.8
Lj3A866T68 Lonicera japonica HOM05D002013 ORTHO05D002293 7.0e-12 74.7 81 48.1
MD16G1022300 Malus domestica HOM05D002013 ORTHO05D002293 7.0e-12 74.7 82 47.6
arahy.Tifrunner.gnm1.ann1.FF7RMB Arachis hypogaea HOM05D002013 ORTHO05D002293 9.1e-12 74.3 82 46.3
arahy.Tifrunner.gnm1.ann1.TT25M1 Arachis hypogaea HOM05D002013 ORTHO05D002293 9.1e-12 74.3 82 46.3
COL.COLO4_13094 Corchorus olitorius HOM05D002013 ORTHO05D002293 9.1e-12 74.3 118 40.7
Nitab4.5_0000918g0010 Nicotiana tabacum HOM05D002013 ORTHO05D002293 9.1e-12 74.3 118 39.8
Psat7g010400 Pisum sativum HOM05D002013 ORTHO05D002293 9.1e-12 74.3 114 40.4
SGA_v2.0_scaffold139G35382 Striga asiatica HOM05D002013 ORTHO05D002293 1.2e-11 73.9 118 40.7
SGA_v2.0_scaffold151G36743 Striga asiatica HOM05D002013 ORTHO05D002293 1.2e-11 73.9 82 47.6
Thecc.02G288300 Theobroma cacao HOM05D002013 ORTHO05D002293 1.2e-11 73.9 118 39.8
MSTRG.2147 Avicennia marina HOM05D002013 ORTHO05D002293 1.6e-11 73.6 118 38.1
ECA234G3448 Erigeron canadensis HOM05D002013 ORTHO05D002293 1.6e-11 73.6 82 46.3
HanXRQChr17g0566841 Helianthus annuus HOM05D002013 ORTHO05D002293 1.6e-11 73.6 82 46.3
MD13G1021000 Malus domestica HOM05D002013 ORTHO05D002293 2.0e-11 73.2 118 41.5
Prupe.1G330700 Prunus persica HOM05D002013 ORTHO05D002293 2.0e-11 73.2 118 39.8
HanXRQChr16g0529891 Helianthus annuus HOM05D002013 ORTHO05D002293 2.6e-11 72.8 82 45.1
PRCOL_00006957 Prasinoderma coloniale HOM05D002013 ORTHO05D002293 3.5e-11 72.4 113 41.6
Sabra10G0080000 Salix brachista HOM05D002013 ORTHO05D002293 3.5e-11 72.4 112 40.2
HPP92_020325 Vanilla planifolia HOM05D002013 ORTHO05D002293 4.5e-11 72.0 83 44.6
Pp3c16_20760 Physcomitrium patens HOM05D002013 ORTHO05D002293 5.9e-11 71.6 117 38.5
Lsat_1_v5_gn_4_13360 Lactuca sativa HOM05D002013 ORTHO05D002293 7.7e-11 71.2 82 45.1
arahy.Tifrunner.gnm1.ann1.N9NNRP Arachis hypogaea HOM05D002013 ORTHO05D083174 1.0e-10 70.9 62 58.1
Mapoly0048s0016 Marchantia polymorpha HOM05D002013 ORTHO05D002293 1.0e-10 70.9 117 37.6
Pp3c25_10350 Physcomitrium patens HOM05D002013 ORTHO05D002293 2.2e-10 69.7 117 36.8
Atru.chr11.627 Acer truncatum HOM05D002013 ORTHO05D002293 2.9e-10 69.3 118 39.0
CDE06G1160 Ceratophyllum demersum HOM05D002013 ORTHO05D002293 2.9e-10 69.3 82 45.1
Os03g0712700 Oryza sativa ssp. japonica HOM05D002013 ORTHO05D002293 3.8e-10 68.9 77 46.8
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 5.0e-10 68.6 118 38.1
SMO348G0100 Selaginella moellendorffii HOM05D002013 ORTHO05D002293 1.1e-09 67.4 81 44.4
Nn3g18302 Nelumbo nucifera HOM05D002013 ORTHO05D002293 1.2e-08 63.9 118 37.3
Nitab4.5_0000325g0010 Nicotiana tabacum HOM05D002013 ORTHO05D002293 8.0e-08 61.2 93 39.8
Hund24941 Selenicereus undatus HOM05D002013 ORTHO05D002293 2.6e-06 56.2 53 50.9


User provided reference genes

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