Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p35880 Brassica napus HOM05D002743 ORTHO05D002895 1.6e-103 379.4 183 100.0
BraA02t08585Z Brassica rapa HOM05D002743 ORTHO05D002895 8.0e-100 367.1 182 97.8
BraA02t08589Z Brassica rapa HOM05D002743 ORTHO05D002895 8.0e-100 367.1 182 97.8
A02p35850 Brassica napus HOM05D002743 ORTHO05D002895 1.5e-98 362.8 182 97.3
C02p54750 Brassica napus HOM05D002743 ORTHO05D002895 9.1e-88 327.0 187 87.2
BcaC03g17512 Brassica carinata HOM05D002743 ORTHO05D002895 7.8e-79 297.4 187 80.7
BolC2t11536H Brassica oleracea HOM05D002743 ORTHO05D002895 4.6e-71 271.6 185 75.1
Carub.0005s0683 Capsella rubella HOM05D002743 ORTHO05D002895 6.4e-49 198.0 151 68.2
AT3G28330 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 2.1e-47 193.0 134 72.4
AL5G17850 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.7e-47 192.6 134 73.9
BcaC04g23796 Brassica carinata HOM05D002743 ORTHO05D002895 2.4e-35 152.9 160 51.9
AL3G39690 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 5.3e-35 151.8 139 59.0
AT3G28280 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 9.0e-35 151.0 143 56.6
Thhalv10000704m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 2.6e-34 149.4 138 55.8
BraA02t08587Z Brassica rapa HOM05D002743 ORTHO05D002895 1.7e-33 146.7 73 100.0
SpUn0003_0080 Schrenkiella parvula HOM05D002743 ORTHO05D002895 1.7e-33 146.7 145 54.5
AL5G17810 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.2e-33 146.4 149 53.7
C04p44820 Brassica napus HOM05D002743 ORTHO05D002895 1.1e-32 144.1 77 85.7
BolC4t26059H Brassica oleracea HOM05D002743 ORTHO05D002895 1.1e-32 144.1 77 85.7
BraA09t36068Z Brassica rapa HOM05D002743 ORTHO05D002895 2.4e-32 142.9 141 53.9
BcaC04g23797 Brassica carinata HOM05D002743 ORTHO05D002895 1.2e-31 140.6 141 51.8
BcaB06g27159 Brassica carinata HOM05D002743 ORTHO05D002895 2.1e-31 139.8 107 66.4
A09p04310 Brassica napus HOM05D002743 ORTHO05D002895 4.6e-31 138.7 141 53.2
BcaC04g23794 Brassica carinata HOM05D002743 ORTHO05D002895 1.0e-30 137.5 159 47.2
C09p04610 Brassica napus HOM05D002743 ORTHO05D002895 3.0e-30 136.0 159 46.5
BolC9t53389H Brassica oleracea HOM05D002743 ORTHO05D002895 3.0e-30 136.0 159 46.5
Thhalv10009727m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 1.9e-29 133.3 146 54.1
A03p54310 Brassica napus HOM05D002743 ORTHO05D002895 4.3e-29 132.1 158 50.0
Carub.0005s0675 Capsella rubella HOM05D002743 ORTHO05D002895 4.3e-29 132.1 141 50.4
Carub.0008s0568 Capsella rubella HOM05D002743 ORTHO05D002895 4.3e-29 132.1 137 51.1
BraA03t14493Z Brassica rapa HOM05D002743 ORTHO05D002895 5.6e-29 131.7 158 48.7
BolC9t53387H Brassica oleracea HOM05D002743 ORTHO05D002895 3.7e-28 129.0 126 53.2
A04p11100 Brassica napus HOM05D002743 ORTHO05D002895 6.2e-28 128.3 145 48.3
A07p07740 Brassica napus HOM05D002743 ORTHO05D002895 8.1e-28 127.9 146 50.0
BraA04t16772Z Brassica rapa HOM05D002743 ORTHO05D002895 1.4e-27 127.1 145 47.6
Carub.0005s0676 Capsella rubella HOM05D002743 ORTHO05D002895 1.8e-27 126.7 152 44.1
BcaC02g09624 Brassica carinata HOM05D002743 ORTHO05D002895 5.3e-27 125.2 145 47.6
C04p44830 Brassica napus HOM05D002743 ORTHO05D002895 5.3e-27 125.2 145 47.6
BolC4t26061H Brassica oleracea HOM05D002743 ORTHO05D002895 5.3e-27 125.2 145 47.6
BraA07t28566Z Brassica rapa HOM05D002743 ORTHO05D002895 5.3e-27 125.2 146 48.6
C07p11650 Brassica napus HOM05D002743 ORTHO05D002895 6.9e-27 124.8 146 49.3
BcaC02g09623 Brassica carinata HOM05D002743 ORTHO05D002895 2.6e-26 122.9 68 83.8
BcaC06g35723 Brassica carinata HOM05D002743 ORTHO05D002895 2.6e-26 122.9 146 48.6
CARHR286050 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.3e-25 120.6 144 47.2
BolC7t41637H Brassica oleracea HOM05D002743 ORTHO05D002895 1.7e-25 120.2 146 47.9
Carub.0004s2674 Capsella rubella HOM05D002743 ORTHO05D002895 2.9e-25 119.4 114 56.1
AT3G28223 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 4.9e-25 118.6 109 56.9
AL5G17830 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 6.4e-25 118.2 112 56.2
Thhalv10009395m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 1.2e-23 114.0 120 55.0
Thhalv10001535m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 7.9e-23 111.3 93 61.3
AL34U10080 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.3e-22 110.5 144 47.9
AL8G22320 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.3e-22 110.5 144 47.9
AL8G22310 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.8e-22 110.2 144 47.9
Carub.0005s0673 Capsella rubella HOM05D002743 ORTHO05D002895 5.6e-21 105.1 109 52.3
THA.LOC104823978 Tarenaya hassleriana HOM05D002743 ORTHO05D002895 6.9e-19 98.2 155 42.6
AL4G45790 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 5.8e-18 95.1 130 44.6
THA.LOC104824016 Tarenaya hassleriana HOM05D002743 ORTHO05D002895 1.0e-17 94.4 168 38.1
AL34U10060 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.7e-17 93.6 139 44.6
BcaB04g19549 Brassica carinata HOM05D002743 ORTHO05D002895 1.7e-17 93.6 158 39.2
BraA02t08588Z Brassica rapa HOM05D002743 ORTHO05D002895 4.9e-17 92.0 92 53.3
AT1G15680 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 6.5e-17 91.7 138 45.7
BcaC06g36618 Brassica carinata HOM05D002743 ORTHO05D002895 6.5e-17 91.7 100 54.0
BcaC06g36619 Brassica carinata HOM05D002743 ORTHO05D002895 6.5e-17 91.7 100 54.0
AL1G27780 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 9.3e-16 87.8 138 42.0
THA.LOC104805970 Tarenaya hassleriana HOM05D002743 ORTHO05D002895 1.2e-15 87.4 149 38.3
BcaNung03477 Brassica carinata HOM05D002743 ORTHO05D002895 1.6e-15 87.0 149 37.6
C06p04730 Brassica napus HOM05D002743 ORTHO05D002895 1.6e-15 87.0 144 38.2
CARHR286560 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.6e-15 87.0 150 36.0
AL6G47130 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.7e-15 86.3 144 38.9
Thhalv10022100m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 4.6e-15 85.5 85 48.2
Sp1g36850 Schrenkiella parvula HOM05D002743 ORTHO05D002895 4.6e-15 85.5 151 41.1
SpUn0137_0030 Schrenkiella parvula HOM05D002743 ORTHO05D002895 4.6e-15 85.5 151 41.1
AL5G18350 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 6.0e-15 85.1 134 38.1
BcaB03g16763 Brassica carinata HOM05D002743 ORTHO05D002895 6.0e-15 85.1 99 51.5
C06p04690 Brassica napus HOM05D002743 ORTHO05D002895 2.3e-14 83.2 145 37.2
AL5G16370 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.0e-14 82.8 139 38.8
Carub.0006s3248 Capsella rubella HOM05D002743 ORTHO05D002895 3.9e-14 82.4 133 39.8
BcaC08g43169 Brassica carinata HOM05D002743 ORTHO05D002895 5.1e-14 82.0 145 36.6
BolC6t35599H Brassica oleracea HOM05D002743 ORTHO05D002895 5.1e-14 82.0 145 36.6
BcaB07g33451 Brassica carinata HOM05D002743 ORTHO05D002895 8.7e-14 81.3 148 38.5
A02p35860 Brassica napus HOM05D002743 ORTHO05D002895 1.1e-13 80.9 85 52.9
BraA06t23552Z Brassica rapa HOM05D002743 ORTHO05D002895 1.5e-13 80.5 150 38.0
C07p02110 Brassica napus HOM05D002743 ORTHO05D002895 1.9e-13 80.1 102 49.0
AL3G39540 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.5e-13 79.7 128 37.5
BcaB07g33448 Brassica carinata HOM05D002743 ORTHO05D002895 2.5e-13 79.7 136 37.5
BcaB07g33449 Brassica carinata HOM05D002743 ORTHO05D002895 2.5e-13 79.7 145 37.2
AL6G43490 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.3e-13 79.3 134 38.1
A05p20390 Brassica napus HOM05D002743 ORTHO05D002895 3.3e-13 79.3 156 36.5
Sp2g04630 Schrenkiella parvula HOM05D002743 ORTHO05D002895 3.3e-13 79.3 146 37.7
BcaC08g43177 Brassica carinata HOM05D002743 ORTHO05D002895 4.3e-13 79.0 150 37.3
C06p04770 Brassica napus HOM05D002743 ORTHO05D002895 4.3e-13 79.0 150 37.3
BcaB08g36410 Brassica carinata HOM05D002743 ORTHO05D002895 5.7e-13 78.6 135 40.0
A02p35840 Brassica napus HOM05D002743 ORTHO05D002895 5.7e-13 78.6 79 50.6
A10p19100 Brassica napus HOM05D002743 ORTHO05D002895 7.4e-13 78.2 136 42.6
BolC6t35602H Brassica oleracea HOM05D002743 ORTHO05D002895 7.4e-13 78.2 138 35.5
Thhalv10029227m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 7.4e-13 78.2 143 36.4
BcaNung01437 Brassica carinata HOM05D002743 ORTHO05D002895 9.7e-13 77.8 58 60.3
C07p52700 Brassica napus HOM05D002743 ORTHO05D002895 9.7e-13 77.8 58 60.3
BraA10t43989Z Brassica rapa HOM05D002743 ORTHO05D002895 9.7e-13 77.8 134 41.8
AL1G57560 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.3e-12 77.4 129 41.9
BcaB07g31193 Brassica carinata HOM05D002743 ORTHO05D002895 1.3e-12 77.4 166 39.2
A06p03440 Brassica napus HOM05D002743 ORTHO05D002895 1.6e-12 77.0 150 37.3
CARHR149600 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.6e-12 77.0 74 56.8
AL5G14680 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.2e-12 76.6 135 36.3
Thhalv10027176m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 2.2e-12 76.6 131 40.5
C03p83580 Brassica napus HOM05D002743 ORTHO05D002895 2.8e-12 76.3 139 38.8
BolC3t20638H Brassica oleracea HOM05D002743 ORTHO05D002895 2.8e-12 76.3 139 38.8
Carub.0151s0001 Capsella rubella HOM05D002743 ORTHO05D002895 2.8e-12 76.3 136 39.0
AT3G23950 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 3.7e-12 75.9 128 37.5
C03p83640 Brassica napus HOM05D002743 ORTHO05D002895 3.7e-12 75.9 139 38.8
BraA05t20946Z Brassica rapa HOM05D002743 ORTHO05D002895 3.7e-12 75.9 152 34.9
BraA10t43899Z Brassica rapa HOM05D002743 ORTHO05D002895 3.7e-12 75.9 135 39.3
Carub.0005s1587 Capsella rubella HOM05D002743 ORTHO05D002895 3.7e-12 75.9 173 34.1
BNapus_Darmor_BZH_scaffold_38p02040 Brassica napus HOM05D002743 ORTHO05D002895 4.8e-12 75.5 132 34.8
CARHR100730 Cardamine hirsuta HOM05D002743 ORTHO05D002895 4.8e-12 75.5 74 52.7
Aa31sc58G40 Aethionema arabicum HOM05D002743 ORTHO05D002895 6.3e-12 75.1 134 38.8
AT3G26010 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 6.3e-12 75.1 135 35.6
AT4G22430 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 6.3e-12 75.1 132 41.7
A02p05860 Brassica napus HOM05D002743 ORTHO05D002895 6.3e-12 75.1 127 39.4
BraA02t05538Z Brassica rapa HOM05D002743 ORTHO05D002895 6.3e-12 75.1 127 39.4
Carub.0007s1889 Capsella rubella HOM05D002743 ORTHO05D002895 6.3e-12 75.1 130 38.5
CARHR229330 Cardamine hirsuta HOM05D002743 ORTHO05D002895 6.3e-12 75.1 128 42.2
Carub.0003s2455 Capsella rubella HOM05D002743 ORTHO05D002895 8.2e-12 74.7 131 37.4
CARHR292690 Cardamine hirsuta HOM05D002743 ORTHO05D002895 8.2e-12 74.7 76 52.6
Thhalv10011517m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 8.2e-12 74.7 151 37.7
AL3G39670 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.1e-11 74.3 65 60.0
A10p18240 Brassica napus HOM05D002743 ORTHO05D002895 1.1e-11 74.3 135 38.5
BolC2t06988H Brassica oleracea HOM05D002743 ORTHO05D002895 1.1e-11 74.3 125 36.0
AL1G67480 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.8e-11 73.6 128 35.2
C09p04580 Brassica napus HOM05D002743 ORTHO05D002895 1.8e-11 73.6 135 37.0
BraA01t02518Z Brassica rapa HOM05D002743 ORTHO05D002895 1.8e-11 73.6 135 37.8
AL133U10030 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.4e-11 73.2 65 58.5
AL3G39550 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.4e-11 73.2 139 36.7
AL6G48160 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.4e-11 73.2 90 42.2
C03p83600 Brassica napus HOM05D002743 ORTHO05D002895 2.4e-11 73.2 136 38.2
BcaB08g36564 Brassica carinata HOM05D002743 ORTHO05D002895 3.1e-11 72.8 136 39.0
CARHR100280 Cardamine hirsuta HOM05D002743 ORTHO05D002895 3.1e-11 72.8 131 38.2
BcaB08g36563 Brassica carinata HOM05D002743 ORTHO05D002895 4.1e-11 72.4 135 36.3
Aa31sc58G10 Aethionema arabicum HOM05D002743 ORTHO05D002895 5.3e-11 72.0 132 37.1
AT1G49990 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 5.3e-11 72.0 136 38.2
A01p25990 Brassica napus HOM05D002743 ORTHO05D002895 6.9e-11 71.6 135 37.0
Carub.0004s1288 Capsella rubella HOM05D002743 ORTHO05D002895 9.0e-11 71.2 141 34.8
AL3G39570 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.2e-10 70.9 128 33.6
BraA01t01181Z Brassica rapa HOM05D002743 ORTHO05D002895 1.5e-10 70.5 122 39.3
CARHR033610 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.5e-10 70.5 131 36.6
AL5G18360 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.0e-10 70.1 143 37.1
CARHR229890 Cardamine hirsuta HOM05D002743 ORTHO05D002895 2.0e-10 70.1 122 40.2
AL6G43570 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.6e-10 69.7 146 32.9
AT3G48220 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 2.6e-10 69.7 70 55.7
BcaC08g43174 Brassica carinata HOM05D002743 ORTHO05D002895 2.6e-10 69.7 141 33.3
AT3G23970 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 3.4e-10 69.3 124 37.1
Carub.0007s1819 Capsella rubella HOM05D002743 ORTHO05D002895 3.4e-10 69.3 141 39.0
CARHR286580 Cardamine hirsuta HOM05D002743 ORTHO05D002895 3.4e-10 69.3 110 39.1
A01p12360 Brassica napus HOM05D002743 ORTHO05D002895 4.5e-10 68.9 122 39.3
C09p53870 Brassica napus HOM05D002743 ORTHO05D002895 4.5e-10 68.9 137 38.7
BcaB07g33444 Brassica carinata HOM05D002743 ORTHO05D002895 5.9e-10 68.6 137 35.0
A10p19880 Brassica napus HOM05D002743 ORTHO05D002895 7.7e-10 68.2 137 35.8
AL6G43580 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.3e-09 67.4 140 37.1
AL6G48200 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.3e-09 67.4 85 41.2
CARHR040090 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.3e-09 67.4 146 38.4
C01p14880 Brassica napus HOM05D002743 ORTHO05D002895 1.7e-09 67.0 130 38.5
BolC1t01435H Brassica oleracea HOM05D002743 ORTHO05D002895 1.7e-09 67.0 130 38.5
Thhalv10024137m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 1.7e-09 67.0 134 31.3
Thhalv10013759m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 2.2e-09 66.6 124 40.3
CARHR131260 Cardamine hirsuta HOM05D002743 ORTHO05D002895 3.8e-09 65.9 150 32.7
BcaB06g26601 Brassica carinata HOM05D002743 ORTHO05D002895 5.0e-09 65.5 121 35.5
CARHR025250 Cardamine hirsuta HOM05D002743 ORTHO05D002895 5.0e-09 65.5 124 37.1
Sp3g21990 Schrenkiella parvula HOM05D002743 ORTHO05D002895 8.5e-09 64.7 121 34.7
BcaC06g35666 Brassica carinata HOM05D002743 ORTHO05D002895 1.9e-08 63.5 121 34.7
BcaC09g51280 Brassica carinata HOM05D002743 ORTHO05D002895 1.9e-08 63.5 130 36.9
BolC7t41698H Brassica oleracea HOM05D002743 ORTHO05D002895 1.9e-08 63.5 121 34.7
BcaB06g27161 Brassica carinata HOM05D002743 ORTHO05D002895 2.5e-08 63.2 83 44.6
BNapus_Darmor_BZH_scaffold_38p02050 Brassica napus HOM05D002743 ORTHO05D002895 2.5e-08 63.2 83 42.2
C07p12300 Brassica napus HOM05D002743 ORTHO05D002895 3.2e-08 62.8 121 34.7
C09p56260 Brassica napus HOM05D002743 ORTHO05D002895 3.2e-08 62.8 143 33.6
A07p08150 Brassica napus HOM05D002743 ORTHO05D002895 4.2e-08 62.4 121 33.9
BraA07t28599Z Brassica rapa HOM05D002743 ORTHO05D002895 4.2e-08 62.4 121 33.9
BcaB08g37317 Brassica carinata HOM05D002743 ORTHO05D002895 5.5e-08 62.0 141 36.2
BcaC04g19386 Brassica carinata HOM05D002743 ORTHO05D002895 5.5e-08 62.0 143 32.9
BolC9t58495H Brassica oleracea HOM05D002743 ORTHO05D002895 5.5e-08 62.0 143 32.9
BcaNung04713 Brassica carinata HOM05D002743 ORTHO05D002895 7.2e-08 61.6 137 35.8
BcaC01g00721 Brassica carinata HOM05D002743 ORTHO05D002895 1.6e-07 60.5 113 37.2
CARHR033580 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.6e-07 60.5 143 33.6
Carub.0005s0386 Capsella rubella HOM05D002743 ORTHO05D002895 2.1e-07 60.1 135 31.9
Thhalv10019528m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 2.1e-07 60.1 159 29.6
CARHR288610 Cardamine hirsuta HOM05D002743 ORTHO05D002895 2.7e-07 59.7 132 32.6
BcaNung01438 Brassica carinata HOM05D002743 ORTHO05D002895 6.1e-07 58.5 84 42.9
BolC7t45770H Brassica oleracea HOM05D002743 ORTHO05D002895 6.1e-07 58.5 84 42.9
CARHR290760 Cardamine hirsuta HOM05D003856 ORTHO05D004547 6.1e-07 58.5 122 36.9
Aa31LG8G6350 Aethionema arabicum HOM05D001738 ORTHO05D001644 1.4e-06 57.4 153 29.4
BcaNung04711 Brassica carinata HOM05D002743 ORTHO05D002895 3.0e-06 56.2 123 36.6
CAN.G1399.1 Capsicum annuum HOM05D006415 ORTHO05D008549 6.7e-06 55.1 132 25.8


User provided reference genes

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