Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 0.0e+00 1626.7 887 100.0
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 0.0e+00 1612.8 887 99.1
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 0.0e+00 1528.5 892 94.6
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 0.0e+00 1520.4 892 94.1
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 0.0e+00 1515.0 892 94.4
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 0.0e+00 1361.7 901 85.9
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 0.0e+00 1248.8 904 79.4
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 0.0e+00 1209.9 903 78.4
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 0.0e+00 1194.1 898 77.3
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 0.0e+00 1188.7 900 77.0
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 0.0e+00 1186.8 900 76.7
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 0.0e+00 1186.8 900 76.7
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 0.0e+00 1168.7 906 76.3
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 0.0e+00 1154.0 913 73.6
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 0.0e+00 1149.8 816 80.8
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 0.0e+00 1121.3 910 72.6
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 1.2e-289 1000.0 914 66.0
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 4.1e-266 921.8 921 64.6
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 6.5e-240 834.7 853 62.5
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 8.9e-229 797.7 902 57.0
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 7.3e-223 778.1 584 76.4
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 5.1e-152 542.7 940 44.7
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 4.3e-151 539.7 968 44.1
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 1.3e-150 538.1 950 44.3
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 1.8e-149 534.3 940 43.7
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 2.0e-148 530.8 950 44.0
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.4e-146 524.6 953 41.8
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 1.4e-146 524.6 964 43.8
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 4.2e-146 523.1 1028 41.5
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 7.2e-146 522.3 947 43.9
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 1.6e-145 521.2 963 42.8
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 1.6e-145 521.2 912 42.1
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.7e-145 520.4 943 43.6
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 4.7e-145 519.6 954 41.9
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 6.1e-145 519.2 958 43.5
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 7.9e-145 518.8 958 43.5
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.3e-144 517.3 938 43.6
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.3e-144 517.3 943 44.2
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 3.0e-144 516.9 925 41.3
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 3.0e-144 516.9 943 43.4
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.9e-144 516.5 957 43.7
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 3.3e-143 513.5 954 41.7
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 5.7e-143 512.7 942 43.3
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.1e-141 508.4 865 42.3
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 3.1e-141 506.9 940 43.2
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 2.0e-140 504.2 962 42.1
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 4.5e-140 503.1 883 41.7
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.2e-139 500.7 873 42.5
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.8e-139 500.0 950 41.3
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 3.8e-139 500.0 938 42.6
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 5.0e-139 499.6 952 41.2
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 5.0e-139 499.6 898 42.4
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 6.5e-139 499.2 849 42.5
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 2.5e-138 497.3 990 41.0
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.7e-137 493.8 950 42.9
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 8.8e-136 488.8 953 42.0
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 3.3e-135 486.9 964 41.8
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 1.3e-134 485.0 904 43.7
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 2.8e-134 483.8 953 41.7
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 8.2e-134 482.3 954 43.4
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 1.2e-132 478.4 899 43.5
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.6e-132 478.0 952 41.0
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 5.9e-132 476.1 957 41.2
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 7.7e-132 475.7 956 41.6
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 1.5e-130 471.5 965 40.8
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 1.9e-130 471.1 966 41.3
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 9.4e-130 468.8 955 39.3
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 1.2e-129 468.4 1022 38.6
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 6.1e-129 466.1 931 40.5
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 1.8e-128 464.5 897 41.7
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 3.0e-128 463.8 954 40.3
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 4.0e-128 463.4 989 39.3
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 6.8e-128 462.6 852 40.6
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 1.5e-127 461.5 931 40.6
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 2.0e-127 461.1 933 41.2
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 3.4e-127 460.3 928 41.9
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 3.4e-127 460.3 933 40.1
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 3.4e-127 460.3 908 40.9
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 3.4e-127 460.3 956 39.0
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 7.5e-127 459.1 933 41.6
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 9.8e-127 458.8 878 38.7
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 6.3e-126 456.1 942 41.3
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 8.3e-126 455.7 945 40.0
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 1.1e-125 455.3 919 40.3
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 3.1e-125 453.8 948 40.2
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 7.0e-125 452.6 822 40.9
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 1.6e-124 451.4 926 41.7
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 2.7e-124 450.7 940 42.7
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.5e-124 450.3 763 44.0
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 1.7e-123 448.0 908 42.4
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 2.2e-123 447.6 910 42.1
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 2.9e-123 447.2 942 40.7
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 3.8e-123 446.8 921 40.2
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 3.8e-123 446.8 669 47.8
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 3.8e-123 446.8 825 40.2
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 6.5e-123 446.0 954 39.4
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 1.1e-122 445.3 960 39.3
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 4.2e-122 443.4 683 46.4
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 5.5e-122 443.0 898 41.1
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 9.4e-122 442.2 889 40.5
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 8.0e-121 439.1 900 39.7
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 5.2e-120 436.4 987 38.7
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 2.0e-119 434.5 913 41.0
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 1.3e-118 431.8 955 39.6
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 4.9e-118 429.9 874 38.2
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.4e-117 428.3 897 40.9
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 2.7e-116 424.1 919 39.9
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 1.3e-115 421.8 974 38.8
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 1.7e-115 421.4 923 38.8
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 8.6e-115 419.1 563 49.4
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.6e-113 414.8 940 39.6
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 3.6e-113 413.7 951 38.6
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 1.8e-112 411.4 850 39.3
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 1.2e-111 408.7 842 38.1
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 3.4e-111 407.1 800 39.1
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 1.3e-110 405.2 994 37.2
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 2.9e-110 404.1 916 38.3
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 8.3e-110 402.5 846 38.1
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.1e-109 402.1 896 39.7
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 5.4e-109 399.8 868 37.9
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 7.8e-108 396.0 850 39.1
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 9.5e-106 389.0 678 43.8
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 9.5e-106 389.0 965 37.7
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.8e-104 384.8 868 38.7
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 4.0e-104 383.6 819 38.6
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 8.9e-104 382.5 761 37.1
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 1.4e-101 375.2 886 37.9
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.5e-98 364.4 695 40.1
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 1.6e-97 361.7 924 36.7
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 1.6e-97 361.7 841 38.4
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 9.8e-95 352.4 888 35.5
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 1.7e-94 351.7 556 44.4
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 3.7e-94 350.5 803 35.7
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 1.7e-91 341.7 824 40.3
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 8.1e-89 332.8 792 38.1
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 3.1e-88 330.9 615 41.5
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 4.9e-86 323.6 902 33.9
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 3.0e-83 314.3 828 36.6
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 1.9e-77 295.0 937 34.5
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 3.2e-77 294.3 883 33.9
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 9.3e-77 292.7 721 35.6
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 2.3e-75 288.1 526 38.6
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.1e-72 277.7 796 33.5
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 5.3e-72 276.9 480 41.5
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 6.4e-70 270.0 495 40.8
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.6e-68 265.4 681 36.6
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 8.7e-67 259.6 843 31.1
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 1.6e-65 255.4 785 33.1
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 7.6e-63 246.5 870 31.5
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 1.6e-60 238.8 795 34.2
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 3.5e-60 237.7 346 44.2
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.6e-55 221.5 461 41.6
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 3.4e-55 221.1 275 48.4
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.7e-54 218.8 419 42.7
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 5.1e-51 207.2 324 42.3
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 2.5e-45 188.3 426 40.4
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 9.7e-42 176.4 378 37.6
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 1.1e-37 162.9 218 46.3
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.5e-37 161.8 558 31.7
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 3.3e-34 151.4 329 30.7
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 3.8e-30 137.9 281 43.8
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 6.5e-30 137.1 108 59.3
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 9.7e-26 123.2 328 35.1
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 1.4e-24 119.4 222 40.5
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.8e-22 111.3 253 41.5
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 8.5e-22 110.2 290 36.9
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 1.9e-21 109.0 125 48.8
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 3.0e-19 101.7 103 51.5
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 8.8e-19 100.1 245 34.3
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 2.6e-18 98.6 204 37.7
A09p03500 Brassica napus HOM05D003655 ORTHO05D041909 5.9e-15 87.4 98 60.2
BraA09t35988Z Brassica rapa HOM05D003655 ORTHO05D041909 5.9e-15 87.4 98 60.2
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 8.5e-14 83.6 370 26.8
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 1.0e-11 76.6 177 33.3
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 1.4e-11 76.3 42 78.6
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 9.1e-08 63.5 35 68.6
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.2e-07 63.2 125 39.2


User provided reference genes

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