Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p34710 Brassica napus HOM05D006427 ORTHO05D008147 5.4e-72 274.2 140 100.0
C02p53270 Brassica napus HOM05D006427 ORTHO05D008147 1.2e-68 263.1 140 95.0
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 8.9e-67 256.9 138 94.2
BcaB07g30216 Brassica carinata HOM05D006427 ORTHO05D008147 2.6e-66 255.4 140 92.9
BraA02t08479Z Brassica rapa HOM05D006427 ORTHO05D008147 3.0e-62 241.9 140 89.3
Thhalv10005093m.g Eutrema salsugineum HOM05D006427 ORTHO05D008147 5.4e-56 221.1 143 83.9
BcaC04g23927 Brassica carinata HOM05D006427 ORTHO05D008147 9.2e-56 220.3 143 83.9
C09p03290 Brassica napus HOM05D006427 ORTHO05D008147 9.2e-56 220.3 143 83.9
A09p03110 Brassica napus HOM05D001087 ORTHO05D001846 1.3e-54 216.5 141 84.4
BraA09t35950Z Brassica rapa HOM05D006427 ORTHO05D003553 1.3e-54 216.5 141 84.4
AL5G15590 Arabidopsis lyrata HOM05D006427 ORTHO05D008147 3.2e-48 195.3 140 78.6
AT3G26740 Arabidopsis thaliana HOM05D006427 ORTHO05D008147 1.2e-47 193.4 142 76.8
CARHR147760 Cardamine hirsuta HOM05D006427 ORTHO05D008147 2.7e-47 192.2 142 76.1
BolC2t11399H Brassica oleracea HOM05D006427 ORTHO05D008147 1.7e-46 189.5 105 95.2
Carub.0005s0476 Capsella rubella HOM05D006427 ORTHO05D008147 1.9e-45 186.0 140 74.3
Sp2g15860 Schrenkiella parvula HOM05D006427 ORTHO05D008147 1.6e-44 183.0 110 81.8
Aa31LG2G5820 Aethionema arabicum HOM05D006427 ORTHO05D008147 4.6e-39 164.9 135 66.7
THA.LOC104805303 Tarenaya hassleriana HOM05D006427 ORTHO05D008147 3.9e-30 135.2 144 55.6
Haze_14945 Corylus avellana HOM05D006427 ORTHO05D008147 9.6e-29 130.6 143 51.7
Psat3g093640 Pisum sativum HOM05D006427 ORTHO05D008147 9.6e-29 130.6 147 52.4
Ca_08136_v3 Cicer arietinum L. HOM05D006427 ORTHO05D008147 3.6e-28 128.6 143 54.5
Thecc.02G193800 Theobroma cacao HOM05D006427 ORTHO05D008147 3.6e-28 128.6 142 52.1
Cpa.g.sc70.74 Carica papaya HOM05D006427 ORTHO05D008147 4.8e-28 128.3 137 54.0
Ciclev10017113m.g Citrus clementina HOM05D006427 ORTHO05D008147 8.1e-28 127.5 143 50.3
QL03p049638 Quercus lobata HOM05D006427 ORTHO05D008147 2.4e-27 125.9 141 52.5
Gohir.D04G140100 Gossypium hirsutum HOM05D006427 ORTHO05D008147 4.0e-27 125.2 144 51.4
Potri.001G066400 Populus trichocarpa HOM05D006427 ORTHO05D008147 4.0e-27 125.2 138 52.2
Gohir.A11G063600 Gossypium hirsutum HOM05D006427 ORTHO05D008147 5.3e-27 124.8 140 55.0
QL02p069636 Quercus lobata HOM05D006427 ORTHO05D008147 5.3e-27 124.8 142 53.5
FAN07G1740 Fragaria x ananassa HOM05D006427 ORTHO05D008147 6.9e-27 124.4 144 52.1
Gorai.012G125000 Gossypium raimondii HOM05D006427 ORTHO05D008147 6.9e-27 124.4 142 51.4
CiPaw.03G002500 Carya illinoinensis HOM05D006427 ORTHO05D008147 9.0e-27 124.0 142 52.8
TAR371G1278 Trochodendron aralioides HOM05D006427 ORTHO05D006987 9.0e-27 124.0 141 50.4
CDE06G0025 Ceratophyllum demersum HOM05D006427 ORTHO05D008147 1.2e-26 123.6 88 67.0
PSO017G1866 Papaver somniferum HOM05D006427 ORTHO05D008147 1.2e-26 123.6 134 51.5
FAN17G2476 Fragaria x ananassa HOM05D006427 ORTHO05D006987 1.5e-26 123.2 144 51.4
GSVIVG01004944001 Vitis vinifera HOM05D006427 ORTHO05D008147 1.5e-26 123.2 141 51.8
Sabra01G0046200 Salix brachista HOM05D006427 ORTHO05D008147 2.0e-26 122.9 138 50.7
Medtr7g084000 Medicago truncatula HOM05D006427 ORTHO05D008147 2.6e-26 122.5 146 52.7
Gohir.D11G067900 Gossypium hirsutum HOM05D006427 ORTHO05D008147 3.4e-26 122.1 143 53.8
Gorai.007G072700 Gossypium raimondii HOM05D006427 ORTHO05D008147 3.4e-26 122.1 143 53.8
Manes.04G092801 Manihot esculenta HOM05D006427 ORTHO05D008147 4.5e-26 121.7 143 53.1
CANSAT64G0982 Cannabis sativa HOM05D006427 ORTHO05D008147 5.8e-26 121.3 145 51.0
Peaxi162Scf00128g01753 Petunia axillaris HOM05D006427 ORTHO05D008147 5.8e-26 121.3 143 49.0
vmacro10314 Vaccinium macrocarpon HOM05D000095 ORTHO05D008147 5.8e-26 121.3 93 65.6
FAN12G4324 Fragaria x ananassa HOM05D006427 ORTHO05D008147 7.6e-26 120.9 144 50.7
Glyma.16G049000 Glycine max HOM05D006427 ORTHO05D008147 7.6e-26 120.9 141 48.9
Sed0027051 Sechium edule HOM05D006427 ORTHO05D008147 9.9e-26 120.6 144 49.3
Dinv19142 Davidia involucrata HOM05D006427 ORTHO05D008147 1.7e-25 119.8 142 52.8
VMungo1383G1825 Vigna mungo HOM05D006427 ORTHO05D008147 1.7e-25 119.8 143 49.7
Duzib052G1158 Durio zibethinus HOM05D006427 ORTHO05D008147 2.2e-25 119.4 131 52.7
Nn3g16291 Nelumbo nucifera HOM05D006427 ORTHO05D008147 2.2e-25 119.4 147 53.1
PSO478G1388 Papaver somniferum HOM05D006427 ORTHO05D008147 2.9e-25 119.0 134 50.7
Gohir.A04G100800 Gossypium hirsutum HOM05D006427 ORTHO05D008147 3.8e-25 118.6 143 49.7
CSS0005682 Camellia sinensis var. sinensis HOM05D006427 ORTHO05D008147 4.9e-25 118.2 142 48.6
Duzib264G1258 Durio zibethinus HOM05D006427 ORTHO05D008147 4.9e-25 118.2 96 63.5
CDE02G3326 Ceratophyllum demersum HOM05D006427 ORTHO05D008147 6.4e-25 117.9 124 53.2
Eucgr.G01934 Eucalyptus grandis HOM05D006427 ORTHO05D008147 6.4e-25 117.9 146 51.4
Prupe.1G216700 Prunus persica HOM05D006427 ORTHO05D008147 6.4e-25 117.9 143 46.2
Thecc.04G047300 Theobroma cacao HOM05D006427 ORTHO05D008147 6.4e-25 117.9 142 51.4
MELO3C022354.2 Cucumis melo HOM05D006427 ORTHO05D008147 8.4e-25 117.5 140 48.6
CANSAT01G2059 Cannabis sativa HOM05D006427 ORTHO05D008147 1.4e-24 116.7 151 50.3
COL.COLO4_21789 Corchorus olitorius HOM05D006427 ORTHO05D008147 1.4e-24 116.7 144 47.9
Glyma.19G102400 Glycine max HOM05D006427 ORTHO05D008147 1.4e-24 116.7 141 47.5
Manes.09G187300 Manihot esculenta HOM05D006427 ORTHO05D008147 1.4e-24 116.7 138 47.8
Aqoxy5G03163 Aquilegia oxysepala HOM05D006427 ORTHO05D008147 1.9e-24 116.3 138 48.6
ClCG06G001750 Citrullus lanatus HOM05D006427 ORTHO05D006987 1.9e-24 116.3 146 46.6
Duzib132G1024 Durio zibethinus HOM05D006427 ORTHO05D008147 2.4e-24 115.9 143 50.3
Hma1.2p1_1436F.1_g283150 Hydrangea macrophylla HOM05D006427 ORTHO05D008147 2.4e-24 115.9 170 47.1
GSVIVG01032993001 Vitis vinifera HOM05D006427 ORTHO05D008147 4.2e-24 115.2 144 49.3
CsaV3_6G007780 Cucumis sativus L. HOM05D006427 ORTHO05D008147 7.1e-24 114.4 137 48.2
Phvul.001G085200 Phaseolus vulgaris HOM05D006427 ORTHO05D008147 1.2e-23 113.6 143 47.6
MD16G1129900 Malus domestica HOM05D006427 ORTHO05D008147 1.6e-23 113.2 143 48.3
vmacro18378 Vaccinium macrocarpon HOM05D006427 ORTHO05D008147 2.1e-23 112.8 143 46.2
Atru.chr2.853 Acer truncatum HOM05D006427 ORTHO05D008147 2.7e-23 112.5 146 48.6
Lj1g0026899 Lotus japonicus HOM05D006427 ORTHO05D008147 3.5e-23 112.1 146 50.7
MBI07_g07335_MAGBIO Magnolia biondii HOM05D006427 ORTHO05D008147 3.5e-23 112.1 150 50.0
arahy.Tifrunner.gnm1.ann1.YL5YHR Arachis hypogaea HOM05D006427 ORTHO05D008147 4.6e-23 111.7 145 48.3
Lj3g0013404 Lotus japonicus HOM05D006427 ORTHO05D008147 7.9e-23 110.9 88 63.6
PGR042G0015 Punica granatum HOM05D006427 ORTHO05D008147 7.9e-23 110.9 116 53.4
arahy.Tifrunner.gnm1.ann1.BNAN8S Arachis hypogaea HOM05D006427 ORTHO05D008147 1.0e-22 110.5 145 47.6
Cc11_g15110 Coffea canephora HOM05D006427 ORTHO05D008147 2.3e-22 109.4 138 47.1
PGR119G1648 Punica granatum HOM05D006427 ORTHO05D008147 2.3e-22 109.4 152 47.4
Rhsim08G0039400 Rhododendron simsii HOM05D006427 ORTHO05D008147 2.3e-22 109.4 142 45.8
Nn4g22155 Nelumbo nucifera HOM05D006427 ORTHO05D008147 8.7e-22 107.5 143 46.9
MSTRG.3040 Avicennia marina HOM05D006427 ORTHO05D008147 1.1e-21 107.1 131 48.9
Potri.003G163402 Populus trichocarpa HOM05D006427 ORTHO05D008147 1.5e-21 106.7 90 60.0
RhsimUnG0101500 Rhododendron simsii HOM05D006427 ORTHO05D008147 2.5e-21 105.9 81 64.2
ECA234G1075 Erigeron canadensis HOM05D006427 ORTHO05D008147 3.3e-21 105.5 99 55.6
HPP92_021622 Vanilla planifolia HOM05D006427 ORTHO05D008147 3.3e-21 105.5 138 50.7
ATR0582G340 Amborella trichopoda HOM05D006427 ORTHO05D008147 4.3e-21 105.1 128 50.0
Eucgr.G01965 Eucalyptus grandis HOM05D006427 ORTHO05D008147 4.3e-21 105.1 127 48.8
Atru.chr12.1402 Acer truncatum HOM05D006427 ORTHO05D008147 7.4e-21 104.4 78 65.4
Solyc09g092110.4 Solanum lycopersicum HOM05D006427 ORTHO05D008147 9.6e-21 104.0 77 62.3
Atru.chr10.1283 Acer truncatum HOM05D006427 ORTHO05D008147 2.1e-20 102.8 141 47.5
Ciclev10006190m.g Citrus clementina HOM05D006427 ORTHO05D008147 2.1e-20 102.8 131 46.6
PGSC0003DMG400026417 Solanum tuberosum HOM05D006427 ORTHO05D008147 2.8e-20 102.4 81 61.7
Duzib187G0815 Durio zibethinus HOM05D006427 ORTHO05D008147 4.8e-20 101.7 140 50.0
TWI36G1420 Tripterygium wilfordii HOM05D006427 ORTHO05D008147 4.8e-20 101.7 128 44.5
CsaV3_3G027740 Cucumis sativus L. HOM05D006427 ORTHO05D008147 8.1e-20 100.9 144 47.9
Sopen09g034980 Solanum pennellii HOM05D006427 ORTHO05D008147 1.1e-19 100.5 77 61.0
SEGI_30338 Sequoiadendron giganteum HOM05D006427 ORTHO05D008147 5.3e-19 98.2 138 44.9
Migut.F00015 Erythranthe guttata HOM05D006427 ORTHO05D008147 1.5e-18 96.7 139 46.0
SalBow4G0295 Salvia bowleyana HOM05D002416 ORTHO05D002554 1.5e-18 96.7 87 51.7
SalBow4G2027 Salvia bowleyana HOM05D002416 ORTHO05D002554 1.5e-18 96.7 87 51.7
TWI18G0640 Tripterygium wilfordii HOM05D006427 ORTHO05D008147 1.5e-18 96.7 138 44.2
HanXRQChr16g0499601 Helianthus annuus HOM05D006427 ORTHO05D008147 1.0e-17 94.0 129 48.1
SGA_v2.0_scaffold44G16952 Striga asiatica HOM05D006427 ORTHO05D008147 1.7e-17 93.2 141 41.1
Mapoly0029s0093 Marchantia polymorpha HOM05D006427 ORTHO05D008147 7.1e-16 87.8 127 40.9
CBR_g20422 Chara braunii HOM05D006427 ORTHO05D008147 9.3e-16 87.4 134 35.8
MELO3C014813.2 Cucumis melo HOM05D006427 ORTHO05D008147 1.6e-15 86.7 133 43.6
Atru.chr5.1933 Acer truncatum HOM05D006427 ORTHO05D008147 1.3e-14 83.6 77 53.2
Os01g0102900 Oryza sativa ssp. japonica HOM05D006427 ORTHO05D008147 1.3e-14 83.6 117 42.7
Atru.chr6.2655 Acer truncatum HOM05D006427 ORTHO05D008147 2.3e-14 82.8 71 56.3
Potri.014G145500 Populus trichocarpa HOM05D006427 ORTHO05D008147 2.5e-13 79.3 122 44.3
RcHm_v2.0_Chr4g0429011 Rosa chinensis HOM05D006427 ORTHO05D008147 4.8e-12 75.1 121 45.5
Hund04203 Selenicereus undatus HOM05D006427 ORTHO05D008147 6.3e-12 74.7 73 53.4
FvH4_4g22790 Fragaria vesca HOM05D006427 ORTHO05D008147 2.4e-11 72.8 119 42.9
Aqoxy5G03161 Aquilegia oxysepala HOM05D006427 ORTHO05D008147 6.9e-11 71.2 71 53.5
COL.COLO4_13367 Corchorus olitorius HOM05D006427 ORTHO05D008147 6.9e-11 71.2 122 45.9
Zm00001eb182180 Zea mays HOM05D006427 ORTHO05D008147 4.5e-10 68.6 79 40.5
Zm00001eb138400 Zea mays HOM05D000461 ORTHO05D008147 5.9e-10 68.2 82 39.0
Atru.chr9.488 Acer truncatum HOM05D006427 ORTHO05D008147 2.5e-08 62.8 73 46.6
EL10Ac6g13399 Beta vulgaris HOM05D006427 ORTHO05D008147 7.2e-08 61.2 116 35.3
ClCG05G012680 Citrullus lanatus HOM05D006427 ORTHO05D008147 1.6e-07 60.1 104 43.3
Sc03g0004990 Simmondsia chinensis HOM05D006427 ORTHO05D008147 1.8e-06 56.6 65 46.2
Zm00001eb127000 Zea mays HOM05D006427 ORTHO05D008147 6.7e-06 54.7 59 42.4


User provided reference genes

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