Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p34410 Brassica napus HOM05D002856 ORTHO05D017644 1.0e-134 483.4 248 100.0
BraA02t08452Z Brassica rapa HOM05D002856 ORTHO05D017644 1.0e-134 483.4 248 100.0
BolC9t54028H Brassica oleracea HOM05D002856 ORTHO05D017644 9.4e-104 380.6 250 81.6
C09p11400 Brassica napus HOM05D002856 ORTHO05D017644 7.6e-45 184.9 177 65.5
A04p17260 Brassica napus HOM05D002856 ORTHO05D003246 1.7e-28 130.6 147 54.4
C07p07530 Brassica napus HOM05D000711 ORTHO05D021802 6.1e-26 122.1 188 46.8
BcaB01g03465 Brassica carinata HOM05D000039 ORTHO05D000370 7.9e-26 121.7 139 59.7
C01p42220 Brassica napus HOM05D002856 ORTHO05D003246 1.8e-25 120.6 85 72.9
BolC7t41171H Brassica oleracea HOM05D000711 ORTHO05D021802 6.7e-25 118.6 188 45.7
Sp2g05450 Schrenkiella parvula HOM05D002856 ORTHO05D003246 6.9e-22 108.6 105 58.1
BcaC09g49507 Brassica carinata HOM05D002856 ORTHO05D003246 1.2e-21 107.8 118 50.8
C01p35760 Brassica napus HOM05D002856 ORTHO05D003246 1.2e-21 107.8 118 50.8
BolC1t03537H Brassica oleracea HOM05D002856 ORTHO05D003246 1.2e-21 107.8 118 50.8
A01p28190 Brassica napus HOM05D002856 ORTHO05D003246 2.0e-21 107.1 105 57.1
BraA01t02951Z Brassica rapa HOM05D002856 ORTHO05D003246 2.0e-21 107.1 105 57.1
AL2G18080 Arabidopsis lyrata HOM05D002856 ORTHO05D003246 1.7e-20 104.0 105 56.2
BcaB04g20187 Brassica carinata HOM05D002856 ORTHO05D003246 2.9e-20 103.2 105 55.2
AT1G58120 Arabidopsis thaliana HOM05D002856 ORTHO05D003246 3.8e-20 102.8 105 55.2
Carub.0002s0649 Capsella rubella HOM05D002856 ORTHO05D003246 3.8e-20 102.8 105 55.2
CARHR053920 Cardamine hirsuta HOM05D002856 ORTHO05D003246 6.5e-20 102.1 105 54.3
BcaC04g22118 Brassica carinata HOM05D002856 ORTHO05D003246 2.7e-18 96.7 101 53.5
C09p23140 Brassica napus HOM05D002856 ORTHO05D003246 2.7e-18 96.7 101 53.5
BolC9t55233H Brassica oleracea HOM05D002856 ORTHO05D003246 2.7e-18 96.7 101 53.5
Aa31LG2G10970 Aethionema arabicum HOM05D002856 ORTHO05D003246 6.1e-18 95.5 107 53.3
A09p18530 Brassica napus HOM05D002856 ORTHO05D003246 6.1e-18 95.5 101 53.5
BraA09t37479Z Brassica rapa HOM05D002856 ORTHO05D003246 6.1e-18 95.5 101 53.5
C02p31290 Brassica napus HOM05D029526 ORTHO05D017644 2.3e-17 93.6 66 81.8
Thhalv10023489m.g Eutrema salsugineum HOM05D002856 ORTHO05D003246 2.3e-17 93.6 99 55.6
C08p06170 Brassica napus HOM05D029526 ORTHO05D017644 2.5e-16 90.1 64 82.8
BolC8t47461H Brassica oleracea HOM05D029526 ORTHO05D017644 2.5e-16 90.1 64 82.8
BraA06t24702Z Brassica rapa HOM05D000711 ORTHO05D000545 3.3e-16 89.7 67 77.6
A06p15910 Brassica napus HOM05D000711 ORTHO05D000545 9.7e-16 88.2 67 76.1
Cpa.g.c34898 Carica papaya HOM05D002856 ORTHO05D003246 2.2e-15 87.0 110 47.3
THA.LOC104820197 Tarenaya hassleriana HOM05D002856 ORTHO05D003246 2.2e-15 87.0 118 45.8
THA.LOC104816801 Tarenaya hassleriana HOM05D002856 ORTHO05D003246 3.7e-15 86.3 95 53.7
C05p18220 Brassica napus HOM05D000711 ORTHO05D000545 8.2e-15 85.1 67 73.1
A02p31080 Brassica napus HOM05D000711 ORTHO05D021802 1.1e-14 84.7 117 53.8
BcaC03g15456 Brassica carinata HOM05D001346 ORTHO05D014100 1.4e-14 84.3 59 83.1
BolC5t30529H Brassica oleracea HOM05D000711 ORTHO05D000545 1.4e-14 84.3 67 73.1
BolC2t09171H Brassica oleracea HOM05D001346 ORTHO05D017644 4.1e-14 82.8 141 40.4
Gohir.A02G078200 Gossypium hirsutum HOM05D002856 ORTHO05D003246 4.1e-14 82.8 87 52.9
TAR381G0017 Trochodendron aralioides HOM05D002856 ORTHO05D003246 5.3e-14 82.4 82 56.1
Prupe.1G529700 Prunus persica HOM05D002856 ORTHO05D003246 9.1e-14 81.6 85 55.3
Gohir.A02G078400 Gossypium hirsutum HOM05D002856 ORTHO05D003246 1.5e-13 80.9 89 52.8
BcaB04g17075 Brassica carinata HOM05D002856 ORTHO05D021802 2.0e-13 80.5 112 51.8
Gohir.D02G085600 Gossypium hirsutum HOM05D002856 ORTHO05D003246 2.6e-13 80.1 89 51.7
Gorai.005G096300 Gossypium raimondii HOM05D002856 ORTHO05D003246 2.6e-13 80.1 89 51.7
LjContig00408g0011956 Lotus japonicus HOM05D002856 ORTHO05D003246 4.5e-13 79.3 81 56.8
TAR625G0505 Trochodendron aralioides HOM05D002856 ORTHO05D003246 4.5e-13 79.3 82 54.9
CiPaw.07G167000 Carya illinoinensis HOM05D002856 ORTHO05D003246 1.0e-12 78.2 82 53.7
MD15G1383600 Malus domestica HOM05D002856 ORTHO05D003246 1.0e-12 78.2 84 53.6
Potri.002G104500 Populus trichocarpa HOM05D002856 ORTHO05D003246 1.0e-12 78.2 88 52.3
Lalb_Chr17g0344461 Lupinus albus HOM05D002856 ORTHO05D003246 1.7e-12 77.4 84 52.4
Manes.18G060200 Manihot esculenta HOM05D002856 ORTHO05D003246 2.2e-12 77.0 89 50.6
Nitab4.5_0000131g0410 Nicotiana tabacum HOM05D002856 ORTHO05D003246 2.2e-12 77.0 83 51.8
Sabra02G0082000 Salix brachista HOM05D002856 ORTHO05D003246 2.2e-12 77.0 88 52.3
Glyma.14G180800 Glycine max HOM05D002856 ORTHO05D003246 2.9e-12 76.6 79 54.4
Medtr5g065970 Medicago truncatula HOM05D002856 ORTHO05D003246 2.9e-12 76.6 81 54.3
Ca_05419_v3 Cicer arietinum L. HOM05D002856 ORTHO05D003246 3.8e-12 76.3 81 54.3
COL.COLO4_35207 Corchorus olitorius HOM05D002856 ORTHO05D003246 3.8e-12 76.3 86 50.0
Duzib116G0198 Durio zibethinus HOM05D002856 ORTHO05D003246 3.8e-12 76.3 88 50.0
Lj1g0004852 Lotus japonicus HOM05D002856 ORTHO05D003246 3.8e-12 76.3 84 52.4
Sp1g17600 Schrenkiella parvula HOM05D000711 ORTHO05D000545 5.0e-12 75.9 76 56.6
Ca_15993_v3 Cicer arietinum L. HOM05D002856 ORTHO05D003246 6.5e-12 75.5 81 53.1
Haze_22332 Corylus avellana HOM05D002856 ORTHO05D003246 6.5e-12 75.5 81 53.1
MD08G1195700 Malus domestica HOM05D002856 ORTHO05D003246 6.5e-12 75.5 84 52.4
TPR.G15999 Trifolium pratense HOM05D002856 ORTHO05D003246 6.5e-12 75.5 82 54.9
TWI56G0259 Tripterygium wilfordii HOM05D002856 ORTHO05D003246 6.5e-12 75.5 87 49.4
vmacro21329 Vaccinium macrocarpon HOM05D002856 ORTHO05D003246 6.5e-12 75.5 84 50.0
Cfa013692 Carpinus fangiana HOM05D002856 ORTHO05D003246 8.5e-12 75.1 84 51.2
Phvul.008G180600 Phaseolus vulgaris HOM05D002856 ORTHO05D003246 8.5e-12 75.1 80 52.5
Thecc.08G069100 Theobroma cacao HOM05D002856 ORTHO05D003246 8.5e-12 75.1 88 48.9
TPR.G26510 Trifolium pratense HOM05D002856 ORTHO05D003246 1.4e-11 74.3 82 52.4
Glyma.02G213200 Glycine max HOM05D002856 ORTHO05D003246 1.9e-11 73.9 79 53.2
Hma1.2p1_0125F.1_g059000 Hydrangea macrophylla HOM05D002856 ORTHO05D003246 1.9e-11 73.9 84 48.8
Hma1.2p1_2272F.1_g318583 Hydrangea macrophylla HOM05D002856 ORTHO05D003246 1.9e-11 73.9 84 48.8
MD09G1227400 Malus domestica HOM05D002856 ORTHO05D003246 1.9e-11 73.9 84 50.0
Duzib093G1724 Durio zibethinus HOM05D002856 ORTHO05D003246 2.5e-11 73.6 89 49.4
Gohir.A05G264900 Gossypium hirsutum HOM05D002856 ORTHO05D003246 2.5e-11 73.6 89 47.2
Gohir.D05G267200 Gossypium hirsutum HOM05D002856 ORTHO05D003246 2.5e-11 73.6 89 47.2
Gorai.009G279400 Gossypium raimondii HOM05D002856 ORTHO05D003246 2.5e-11 73.6 89 47.2
Lalb_Chr11g0065081 Lupinus albus HOM05D002856 ORTHO05D003246 2.5e-11 73.6 84 50.0
Psat2g068040 Pisum sativum HOM05D002856 ORTHO05D003246 2.5e-11 73.6 81 53.1
Psat5g046080 Pisum sativum HOM05D002856 ORTHO05D003246 2.5e-11 73.6 86 51.2
Gohir.D02G085400 Gossypium hirsutum HOM05D002856 ORTHO05D003246 3.2e-11 73.2 78 51.3
Lalb_Chr04g0252921 Lupinus albus HOM05D002856 ORTHO05D003246 3.2e-11 73.2 84 51.2
Medtr3g100550 Medicago truncatula HOM05D002856 ORTHO05D003246 3.2e-11 73.2 88 50.0
Sopen04g030030 Solanum pennellii HOM05D001657 ORTHO05D001557 3.2e-11 73.2 83 50.6
BcaC04g23172 Brassica carinata HOM05D029526 ORTHO05D017644 5.5e-11 72.4 91 60.4
RcHm_v2.0_Chr7g0236941 Rosa chinensis HOM05D002856 ORTHO05D003246 5.5e-11 72.4 84 50.0
Atru.chr13.1032 Acer truncatum HOM05D002856 ORTHO05D003246 7.2e-11 72.0 87 50.6
Peaxi162Scf00160g00108 Petunia axillaris HOM05D002856 ORTHO05D003246 7.2e-11 72.0 88 47.7
AL1G32500 Arabidopsis lyrata HOM05D000711 ORTHO05D000545 9.4e-11 71.6 65 56.9
FvH4_5g35560 Fragaria vesca HOM05D002856 ORTHO05D003246 9.4e-11 71.6 84 52.4
FAN04G3131 Fragaria x ananassa HOM05D002856 ORTHO05D003246 9.4e-11 71.6 84 52.4
FAN08G2388 Fragaria x ananassa HOM05D002856 ORTHO05D003246 9.4e-11 71.6 84 52.4
Glyma.04G091900 Glycine max HOM05D002856 ORTHO05D003246 9.4e-11 71.6 83 49.4
Glyma.06G093700 Glycine max HOM05D002856 ORTHO05D003246 9.4e-11 71.6 88 47.7
Lj4C89G11 Lonicera japonica HOM05D002856 ORTHO05D003246 9.4e-11 71.6 76 51.3
Peaxi162Scf00281g00012 Petunia axillaris HOM05D002856 ORTHO05D003246 9.4e-11 71.6 91 47.3
PGSC0003DMG400012906 Solanum tuberosum HOM05D002856 ORTHO05D003246 9.4e-11 71.6 83 49.4
MELO3C003530.2 Cucumis melo HOM05D002856 ORTHO05D003246 1.2e-10 71.2 87 47.1
FAN13G1695 Fragaria x ananassa HOM05D002856 ORTHO05D003246 1.6e-10 70.9 84 52.4
Nitab4.5_0003300g0040 Nicotiana tabacum HOM05D002856 ORTHO05D003246 1.6e-10 70.9 83 49.4
QL09p017533 Quercus lobata HOM05D002856 ORTHO05D003246 1.6e-10 70.9 85 48.2
TWI12G0205 Tripterygium wilfordii HOM05D002856 ORTHO05D003246 2.1e-10 70.5 90 48.9
Dinv44847 Davidia involucrata HOM05D002856 ORTHO05D003246 2.7e-10 70.1 92 45.7
PGR042G2766 Punica granatum HOM05D002856 ORTHO05D003246 2.7e-10 70.1 95 45.3
Sed0008840 Sechium edule HOM05D002856 ORTHO05D003246 4.7e-10 69.3 86 46.5
CsaV3_3G047930 Cucumis sativus L. HOM05D002856 ORTHO05D003246 6.1e-10 68.9 89 44.9
Sc23g0000620 Simmondsia chinensis HOM05D002856 ORTHO05D003246 6.1e-10 68.9 83 47.0
VMungo1309G3058 Vigna mungo HOM05D002856 ORTHO05D003246 6.1e-10 68.9 82 48.8
PSO541G0975 Papaver somniferum HOM05D002856 ORTHO05D003246 7.9e-10 68.6 89 46.1
PSO675G9039 Papaver somniferum HOM05D002856 ORTHO05D003246 7.9e-10 68.6 89 46.1
Actinidia10377 Actinidia chinensis HOM05D002856 ORTHO05D003246 1.0e-09 68.2 73 52.1
Cc10_g15750 Coffea canephora HOM05D002856 ORTHO05D003246 1.4e-09 67.8 87 46.0
Haze_10541 Corylus avellana HOM05D002856 ORTHO05D003246 1.4e-09 67.8 80 48.8
Nn2g14852 Nelumbo nucifera HOM05D002856 ORTHO05D003246 1.4e-09 67.8 86 48.8
Nitab4.5_0000354g0200 Nicotiana tabacum HOM05D002856 ORTHO05D003246 1.4e-09 67.8 84 44.0
Solyc04g076150.3 Solanum lycopersicum HOM05D002856 ORTHO05D003246 1.4e-09 67.8 65 53.8
Rhsim06G0072700 Rhododendron simsii HOM05D002856 ORTHO05D003246 1.8e-09 67.4 84 45.2
CSS0023288 Camellia sinensis var. sinensis HOM05D002856 ORTHO05D003246 2.3e-09 67.0 92 43.5
arahy.Tifrunner.gnm1.ann1.T2W9R6 Arachis hypogaea HOM05D002856 ORTHO05D003246 3.0e-09 66.6 87 43.7
Gohir.D02G200000 Gossypium hirsutum HOM05D002856 ORTHO05D003246 3.0e-09 66.6 77 48.1
Gorai.005G224700 Gossypium raimondii HOM05D002856 ORTHO05D003246 3.0e-09 66.6 77 48.1
Lj4A735T34 Lonicera japonica HOM05D002856 ORTHO05D003246 3.0e-09 66.6 82 47.6
PGR031G1395 Punica granatum HOM05D002856 ORTHO05D003246 3.0e-09 66.6 98 41.8
Sopen12g029960 Solanum pennellii HOM05D002856 ORTHO05D003246 3.0e-09 66.6 91 42.9
Gohir.A03G176200 Gossypium hirsutum HOM05D002856 ORTHO05D003246 3.9e-09 66.2 77 48.1
Nitab4.5_0001607g0040 Nicotiana tabacum HOM05D002856 ORTHO05D003246 3.9e-09 66.2 84 44.0
ClCG11G014520 Citrullus lanatus HOM05D002856 ORTHO05D003246 6.7e-09 65.5 86 44.2
Solyc12g087930.1 Solanum lycopersicum HOM05D002856 ORTHO05D003246 6.7e-09 65.5 91 41.8
arahy.Tifrunner.gnm1.ann1.15NGKM Arachis hypogaea HOM05D002856 ORTHO05D003246 8.8e-09 65.1 87 43.7
PGSC0003DMG400002035 Solanum tuberosum HOM05D002856 ORTHO05D003246 8.8e-09 65.1 91 41.8
TWI59G0481 Tripterygium wilfordii HOM05D002856 ORTHO05D003246 1.1e-08 64.7 75 48.0
Atru.chr6.1238 Acer truncatum HOM05D002856 ORTHO05D003246 1.5e-08 64.3 80 46.2
MBI02_g04226_MAGBIO Magnolia biondii HOM05D002856 ORTHO05D003246 1.5e-08 64.3 83 45.8
Aqoxy6G01453 Aquilegia oxysepala HOM05D002856 ORTHO05D003246 2.0e-08 63.9 83 43.4
AT1G19790 Arabidopsis thaliana HOM05D000711 ORTHO05D000545 2.0e-08 63.9 59 59.3
Cfa005698 Carpinus fangiana HOM05D002856 ORTHO05D003246 2.0e-08 63.9 82 42.7
CiPaw.05G030700 Carya illinoinensis HOM05D002856 ORTHO05D003246 2.0e-08 63.9 88 40.9
C07p17370 Brassica napus HOM05D002856 ORTHO05D021802 2.6e-08 63.5 92 44.6
Eucgr.F00410 Eucalyptus grandis HOM05D002856 ORTHO05D003246 2.6e-08 63.5 83 47.0
Nn1g05535 Nelumbo nucifera HOM05D002856 ORTHO05D003246 2.6e-08 63.5 82 46.3
arahy.Tifrunner.gnm1.ann1.U7ZH7G Arachis hypogaea HOM05D002856 ORTHO05D003246 4.4e-08 62.8 87 41.4
Manes.10G101400 Manihot esculenta HOM05D002856 ORTHO05D003246 4.4e-08 62.8 83 43.4
Sed0007545 Sechium edule HOM05D002856 ORTHO05D003246 4.4e-08 62.8 84 44.0
arahy.Tifrunner.gnm1.ann1.HZ2BW9 Arachis hypogaea HOM05D002856 ORTHO05D003246 5.7e-08 62.4 87 41.4
HanXRQChr10g0278221 Helianthus annuus HOM05D002856 ORTHO05D003246 7.4e-08 62.0 84 41.7
COL.COLO4_32359 Corchorus olitorius HOM05D002856 ORTHO05D003246 9.7e-08 61.6 81 40.7
Lsat_1_v5_gn_6_106301 Lactuca sativa HOM05D002856 ORTHO05D003246 9.7e-08 61.6 93 38.7
MBI06_g36042_MAGBIO Magnolia biondii HOM05D002856 ORTHO05D003246 1.3e-07 61.2 80 42.5
CSS0033014 Camellia sinensis var. sinensis HOM05D002856 ORTHO05D003246 1.7e-07 60.8 67 47.8
arahy.Tifrunner.gnm1.ann1.13RJNQ Arachis hypogaea HOM05D002856 ORTHO05D003246 3.7e-07 59.7 71 45.1
arahy.Tifrunner.gnm1.ann1.X5G4SJ Arachis hypogaea HOM05D002856 ORTHO05D003246 3.7e-07 59.7 71 45.1
Nn6g35067 Nelumbo nucifera HOM05D002856 ORTHO05D003246 3.7e-07 59.7 68 47.1
RhsimUnG0008500 Rhododendron simsii HOM05D002856 ORTHO05D003246 3.7e-07 59.7 96 39.6
Glyma.15G056900 Glycine max HOM05D002856 ORTHO05D003246 4.8e-07 59.3 82 42.7
Phvul.009G143900 Phaseolus vulgaris HOM05D002856 ORTHO05D003246 4.8e-07 59.3 82 41.5
arahy.Tifrunner.gnm1.ann1.TESV9W Arachis hypogaea HOM05D002856 ORTHO05D003246 6.3e-07 58.9 99 36.4
Manes.07G036700 Manihot esculenta HOM05D002856 ORTHO05D003246 6.3e-07 58.9 83 41.0
Nitab4.5_0001264g0130 Nicotiana tabacum HOM05D002856 ORTHO05D003246 8.2e-07 58.5 72 43.1
Nitab4.5_0002650g0050 Nicotiana tabacum HOM05D002856 ORTHO05D003246 8.2e-07 58.5 72 43.1
BcaC08g46872 Brassica carinata HOM05D002856 ORTHO05D021802 1.1e-06 58.2 53 60.4
CARHR020300 Cardamine hirsuta HOM05D000711 ORTHO05D000545 1.1e-06 58.2 65 52.3
Dinv15991 Davidia involucrata HOM05D002856 ORTHO05D003246 1.1e-06 58.2 93 39.8
CAN.G523.26 Capsicum annuum HOM05D002856 ORTHO05D003246 1.4e-06 57.8 72 43.1
Sabra17G0032200 Salix brachista HOM05D002856 ORTHO05D003246 1.4e-06 57.8 83 43.4
vmacro01852 Vaccinium macrocarpon HOM05D002856 ORTHO05D003246 1.4e-06 57.8 94 38.3
CAN.G806.6 Capsicum annuum HOM05D002856 ORTHO05D003246 3.1e-06 56.6 70 42.9
Dinv24158 Davidia involucrata HOM05D002856 ORTHO05D003246 3.1e-06 56.6 89 42.7
PGR142G4224 Punica granatum HOM05D002856 ORTHO05D003246 3.1e-06 56.6 93 37.6
Thecc.02G131600 Theobroma cacao HOM05D002856 ORTHO05D003246 3.1e-06 56.6 84 36.9
Migut.B00561 Erythranthe guttata HOM05D002856 ORTHO05D003246 4.1e-06 56.2 51 45.1
MD16G1154700 Malus domestica HOM05D002856 ORTHO05D003246 4.1e-06 56.2 69 43.5
HPP92_005778 Vanilla planifolia HOM05D002856 ORTHO05D003246 4.1e-06 56.2 83 34.9
CSS0025288 Camellia sinensis var. sinensis HOM05D002856 ORTHO05D003246 5.3e-06 55.8 86 39.5
Duzib248G1414 Durio zibethinus HOM05D002856 ORTHO05D003246 5.3e-06 55.8 84 36.9
MD13G1155200 Malus domestica HOM05D002856 ORTHO05D003246 5.3e-06 55.8 65 46.2
Peaxi162Scf00299g00835 Petunia axillaris HOM05D002856 ORTHO05D003246 5.3e-06 55.8 72 41.7
PGSC0003DMG400033586 Solanum tuberosum HOM05D002856 ORTHO05D003246 5.3e-06 55.8 72 41.7
RcHm_v2.0_Chr4g0424881 Rosa chinensis HOM05D002856 ORTHO05D003246 7.0e-06 55.5 86 38.4
Hma1.2p1_0522F.1_g172010 Hydrangea macrophylla HOM05D002856 ORTHO05D003246 9.1e-06 55.1 93 37.6
Hma1.2p1_2187F.1_g316490 Hydrangea macrophylla HOM05D002856 ORTHO05D003246 9.1e-06 55.1 93 37.6
HPP92_005813 Vanilla planifolia HOM05D002856 ORTHO05D003246 9.1e-06 55.1 83 33.7


User provided reference genes

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